Mdo-HB-05-11

Haplotype Block Overview

Name	Mdo-HB-05-11
Species	Malus x domestica
Stock Haplotype	[view all 427]
Haplotype	[view all]

Publications


Year	Publication
2019	Vanderzande S, Howard NP, Cai L, Da Silva Linge C, Antanaviciute L, Bink MCAM, Kruisselbrink JW, Bassil N, Gasic K, Iezzoni A, Van de Weg E, Peace C. High-quality, genome-wide SNP genotypic data for pedigreed germplasm of the diploid outbreeding species apple, peach, and sweet cherry through a common workflow. PloS one. 2019; 14(6):e0210928.

Stock Haplotype

Name	Haplotype
Cox's Orange Pippin	3 6
Rome Beauty Law	29 9
Jonafree	29 40
Redfree	119 25
Spartan	21 4
Wagener	41 42
Worcester Pearmain	63 9
Tsugaru	3 40
Golden Delicious	3 4
Fuji	10 4
Empire	21 4
Gala	4 6
Honeycrisp	3 9
Elstar	3 62
Marshall McIntosh	21 9
Cripps Pink	14 4
Granny Smith	3 4
Jonathan	3 40
Ralls Janet	10
Delicious	4
Discovery	62 9
Prima	3 4
Fiesta	41 6
Ingrid Marie	3 62
Idared	3 41
Esopus Spitzenburg	3
Braeburn	4 6
Sansa	40 6
Lodi	41
James Grieve	3 59
Cripps Red	14 4
Burgundy	3 9
Akane	40 9
Ambrosia	4
Aurora Golden Gala	4
Beacon	33 6
Ben Davis	4 5 62
Cameo	4
Chinook	4 6
Clivia	3 42
Co-op 17	21 3
Co-op 18	105 41
Dayton	29 3 4 6
Delblush	4 5
Delcorf	5
Delorgue	40 5
Dolgo	33 88
Geheimrat Dr. Oldenburg	42 9
Duchess of Oldenburg	5 6
Early Cortland	21 41 62
Empress	21 6
F2 26829-2-2	29 4
Fantazja	21 9
Fireside	40 59
Fortune	4 6
Frostbite	3 6
Ginger Gold	3 41
GMAL 4327	41 71
GMAL 4328	62
GMAL 4329	41 62
GMAL 4332	62 71
Goodland	6
Haralson	10 6
Honeygold	4 6
Hudson	4 9
Jersey Black	3 64
Jonamac	21 3
Keepsake	6 9
Kerr	10 33
Lady Williams	14 3
Liberty	4 9
Linda	40 9
Liveland Raspberry	41 89
Longfield	21 5
Macoun	3 9
Malinda	10 9
Melba	89 9
Melrose	4 40
MN 1627	3 6
MN 1628	6 9
MN 1691	40 6
MN 1706	9
MN 1708	3 6
MN 1760	9
MN 1764	9
MN 1789	6
MN 1802	6
MN 1836	10 6
MN 1837	3 6
MN 1839	42 6
MN 1888	3 6
MN 1899	21 59
MN 1940	10 6
MN 2016	3 6
AA-44	10 3
Monroe	3 9
Montgomery	41
Nicola	4
NJ 31	29
NJ 53	4 9
Oriole	41 6
PRI 14-126	29 4
PRI 14-510	29 3
PRI 1661-2	4 9
PRI 54-12	4 6
PRI 855-102	40
Primula	29 9
Raritan	118 51
Regent	10 21
Russian Seedling	110 62
Sawa	21 9
Sciros	4
Sharon	21 6
Silken	21 6
Wildung	21 40
Splendour	4
State Fair	10 42
NJ 55	4 6
Co-op 29	21 4
Sunrise	21 3
Sweet Sixteen	3 9
Topaz	59 9
Vista Bella	6 9
Wealthy	40 6
Winesap	4 5
Winter Banana	111 123
Yellow Newtown	123 124
Yellow Transparent	3 41
0407-0001	3 4
0407-0005	3 4
0407-0006	3 4
0407-0007	3 4
0407-0008	3 4
0408-0003	4 9
0408-0004	4 9
0408-0005	4 9
0408-0007	4 9
0408-0008	4 9
0408-0010	4 9
0408-0011	4 9
0408-0014	4
0408-0015	4 9
0409-0022	4 9
0409-0024	3 4
0409-0028	3 4
0409-0030	3 4
0409-0032	4 9
0409-0035	3 4
0409-0036	3 4
0409-0038	4 9
0409-0039	3 4
0409-0040	4 9
0409-0043	3 4
0409-0045	3 4
0410-0002	3 4
0410-0003	3 4
0410-0005	3 4
0410-0006	3 4
0410-0010	3 4
0410-0011	3 4
0410-0012	3 4
0410-0013	3 4
0410-0015	4
0410-0017	4
0410-0018	4
0414-0010	3 9
0414-0015	3
0414-0017	3
0414-0018	3 9
0414-0019	3 9
0414-0020	3 4
0414-0021	3 9
0415-0001	4 9
0415-0004	3 9
0415-0005	4 9
0415-0011	4 9
0415-0012	3 9
0415-0013	9
0415-0014	6 9
0415-0016	9
0415-0017	4 9
0415-0019	3 9
0415-0020	9
0415-0025	3 4
AE_HCxJonf-145	29 9
AE_HCxJonf-157	29 3
AE_HCXJonf-162	40 9
AE_HCXJonf-168	21 9
AE_HCxJonf-175	29 3
AE_HCxJonf-183	29 3
AE_HCxJonf-185	29 9
AE0118-237	10 9
AE0118-238	10 9
AE0118-239	42 9
AE0118-240	10 9
AE0118-243	10 9
AE0118-244	10 9
AE0118-245	10 3
AE0118-246	10 9
AE0118-249	10 9
AE0206-159	6
AE0206-160	6
AE0206-161	4 6
AE0206-162	4 6
AE0206-163	10 4
AE0206-164	6
AE0206-165	6
AE0206-167	10 4
AE0206-168	10 6
AE0206-169	6
AE0206-170	4 6
AE0210-146	21 62
AE0210-147	21 62
AE0210-149	21 62
AE0210-150	3 62
AE0210-151	3 41
AE0210-152	3 6
AE0210-153	21 41
AE0210-154	3 41
AE0210-157	21 62
AE0210-158	3 41
AE0210-159	21 41
AE0210-162	3 62
AE0210-163	3 62
AE0210-164	21 62
AE0210-165	21 41
AE0210-166	3 41
AE0210-168	3 41
AE0210-169	3 41
AE0210-170	21 62
AE0210-171	21 62
AE0210-172	3 62
AE0210-173	21 62
AE0210-174	3 62
AE0213-175	41 71
AE0213-176	41 62
AE0213-177	3 62
AE0213-178	3 71
AE0213-179	3 71
AE0213-180	3 62
AE0213-181	3 62
AE0213-182	3 71
AE0213-183	3 62
AE0213-186	3 62
AE0213-187	41 62
AE0213-190	41 71
AE0213-193	3 71
AE0213-194	3 71
AE0213-195	41 62
AE0213-196	3 62
AE0213-197	3 71
AE0213-198	3 71
AE0213-199	3 62
AE0213-200	41 62
AE0213-201	3 62
AE0213-202	3 71
AE0213-205	41 62
AE0213-206	41 62
AE0251-323	3 4
AE0251-325	3 4
AE0251-327	6 9
AE0251-329	4 9
AE0251-330	3 6
AE0251-331	6 9
AE0251-342	6 9
AE0251-343	4 9
AE0406-239	21 9
AE0406-254	6 9
AE0406-258	21 3
AE0406-259	21 3
AE0406-263	6 9
AE0406-264	21 9
AE0406-266	21 9
AE0406-274	21 9
AE0406-278	21 3
AE0406-281	21 3
AE0406-286	3 6
AE0406-288	21 9
AE0406-289	21 9
AE0406-294	21 3
AE0406-298	6 9
Minneiska	6 9
NJ 303955	6
PRI 612-1	4
Arlet	3 41
Co-op 39	29 6
Pinova	3 4
Scired	4 6
Scifresh	4 6
0409-0025	3 4
0409-0026	3 4
0409-0027	3 4
0409-0031	4 9
0409-0033	4 9
0409-0047	4 9
G-14-050	10 4
G-14-052	3
G-14-054	3
G-14-055	3
G-14-056	10 3
G-14-057	3 4
G-14-059	3 4
G-14-060	3
G-14-061	10 3
G-14-062	3 4
G-14-064	10 4
G-14-069	10 4
G-14-067	3
G-14-068	3
G-14-071	10 3
G-14-073	3
G-14-074	10 3
G-14-075	3
G-14-076	3 4
G-14-077	10 4
G-14-078	3 4
G-14-080	3
G-09-232	3 6
G-09-233	41 6
G-09-234	3 6
G-09-235	3 6
G-09-236	4 41
G-09-237	4 41
G-09-238	41 6
G-09-239	41 6
G-09-240	4 41
G-09-241	3 4
G-09-242	41 6
G-09-243	3 6
G-09-245	41 6
G-09-246	41 6
G-09-258	4 41
G-09-259	4 41
G-09-260	3 6
G-09-261	4 41
G-09-262	3 4
G-09-263	3 6
G-09-264	3 6
G-09-265	3 4
G-09-266	3 4
G-09-267	3 4
G-09-268	3 6
0408-0021	4 9
Wijcik McIntosh	110 122
Beauty of Bath	3 62
Priam	29 3
Northern Spy	10 9
Co-op 15	4 9
MN 1702	3 59
WA 2	4 6
WA 5	4 9
Pitmaston Pineapple	41 9
0411-0011	3 9
0411-0017	4 41
0411-0023	41 9
AE0250-086	3 6
AE0250-087	4 9
AE0250-089	3 4
AE0250-090	4 9
AE0250-092	4 9
AE0250-093	6 9
AE0250-094	3 6
AE0250-095	4 9
Sonya	4 6
Co-op 38	3 4
AE0250-096	29 6
AE0250-327	29 6
Co-op 30	4 9
Jonagrimes	3 5
AE0211-036	3
G-07-039	110 40
PRI 14-152	29 4
PRI 47-176	4 40
G-07-041	10 40
BC-8S-27-43	4 6
AE0250-091	3 71
AE0250-097	3 41
AE0250-325	41 9
AE0250-326	41 9
AE0250-329	3 71
AE0250-333	71 9
AE0250-334	41 9
AE0250-335	3 41
AE0250-336	41 9
AE0250-338	41 9
AE0250-341	3 71
AE0211-038	3 62
AE0211-043	3 62
AE0211-045	41 62
AE0211-051	41 62
G-07-010	3 40
G-07-014	4 6
G-07-015	4 6
G-07-019	3 40
G-07-020	3 6
G-07-024	3 40
G-07-032	3 40
G-07-033	3 6
G-07-034	4 6
G-07-035	3 40
G-07-044	3 40
AE0211-053	41 6
AE0211-054	3 6
AE0250-088	6 9
AE0250-324	3 6
AE0250-328	10 3
AE0250-331	10 9
AE0250-332	10 9
AE0250-337	3 6
AE0250-339	10 9
Minnewashta	10 6
Autumn Crisp	3 9
G-14-066	3
Lu1-11-010	4
Lu1-11-013	4 9
Lu1-11-016	4
Lu1-11-017	4 9
Lu1-11-018	10 9
NJ 90	21 4
Lord Lambourne	59 9
Antonovka GH	41
Grimes Golden	3
Kidds Orange Red	4 6
Malus baccata Hansen #2	127 62
Malus baccata Jackii	128 28
Summerred	6 9
William's Pride	3 4

Map Positions


Haplotype Block	Map Name	Linkage Group	Start	Stop
Mdo-HB-05-11	Apple-RosBREED-3.9K-2019	5	71.65	72.73

Projects


Project Name
RosBREED_Apple_CRS_Haplotype_2020

Haplotypes

Marker	2	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	111	112	113	114	115	116	117	118	119	120	121	122	123	124	125	126	127	128	129	130	131	132	133	134
GDsnp00264	-	A	B	A	A	-	-	B	B	B	A	-	A	A	A	-	-	B	B	A	B	B	B	B	B	B	B	B	A	B	A	A	B	B	B	B	B	B	B	B	B	-	-	A	B	-	B	B	B	A	B	B	-	A	B	B	B	A	-	-	B	-	-	-	-	B	B	B	A	B	B	B	B	B	B	A	B	A	B	A	B	B	A	A	B	-	-	-	B	B	A	B	A	B	-	-	A	A	-	-	-	-	A	B	B	A	B	-	B	A	B	B	B	A	B	B	A	A	B	A	A	B	A	B	A	B	B	A	B	-	-	A	B
RosBREEDSNP_SNP_AG_6022284_Lg5_139135_MAF20_139135_exon1	-	A	A	B	A	A	A	A	A	A	B	-	A	A	A	A	A	A	A	B	A	A	A	A	A	A	A	A	-	-	A	B	A	A	A	A	A	A	A	A	A	-	-	A	A	A	A	A	A	A	A	A	A	A	A	A	A	B	-	-	A	-	-	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	-	-	B	A	-	-	-	A	A	-	-	-	-	-	A	B	B	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	B	A	A	B	A	A	B	B	A	A	A	A	A	B	-	-	-	-	A	-
RosBREEDSNP_SNP_AG_6192018_Lg5_01333_MAF20_492308_exon1	A	A	A	A	A	A	A	B	B	A	A	B	A	A	A	A	A	A	B	A	A	B	A	A	-	A	A	A	-	-	A	A	A	B	A	B	A	B	A	A	A	A	B	A	B	A	A	B	A	A	A	B	A	A	A	B	A	A	-	-	A	A	A	A	A	B	A	B	A	B	A	A	B	B	A	-	-	A	B	A	B	A	A	A	A	-	A	A	B	A	-	-	A	B	B	A	A	A	A	A	A	A	B	A	A	A	A	A	A	A	A	A	B	A	A	A	A	A	B	A	B	A	B	B	A	A	A	A	B	-	-	A	A
RosBREEDSNP_SNP_AG_6230318_Lg5_01333_MAF50_439245_exon1	B	B	A	A	B	-	-	A	A	A	A	A	A	A	B	A	B	A	A	B	B	A	A	A	-	A	A	B	-	-	B	B	A	A	A	A	A	A	A	A	A	A	A	A	A	-	-	-	B	B	B	A	B	B	A	A	A	B	-	-	A	B	A	B	A	-	-	A	B	A	A	A	A	A	A	B	A	B	A	B	A	A	B	B	A	-	A	B	-	-	B	A	B	A	A	-	B	B	A	B	B	-	A	B	-	B	A	-	A	A	B	A	A	B	A	A	B	B	A	B	B	B	A	A	B	A	A	B	A	-	-	A	A
RosBREEDSNP_SNP_CA_6171980_Lg5_01333_MAF10_1671392_exon1	-	B	B	B	B	B	B	A	A	-	-	-	B	B	B	B	B	B	A	B	B	A	B	A	-	A	B	B	-	-	B	B	B	A	B	A	B	A	B	B	A	-	-	B	A	B	B	A	B	B	B	A	B	B	B	-	-	B	-	-	A	-	-	B	B	A	B	-	-	B	B	B	A	B	B	B	B	B	A	B	A	-	-	B	A	B	B	B	B	A	-	-	B	A	A	B	B	B	B	B	B	B	A	B	A	B	B	A	A	B	B	B	A	B	A	B	B	B	B	A	B	A	B	-	A	A	B	B	A	-	-	A	-
RosBREEDSNP_SNP_TC_6078855_Lg5_MDP0000162861_MAF50_MDP0000162861_exon6	A	A	A	A	B	B	A	B	A	A	A	-	A	A	A	A	A	A	B	A	-	-	B	B	-	A	B	B	-	-	A	A	-	B	A	B	A	B	A	B	B	A	B	A	B	-	-	-	B	A	-	-	A	A	B	B	B	A	-	-	B	-	-	B	A	B	A	B	A	B	-	-	A	B	B	A	A	-	-	-	B	B	A	-	-	-	-	-	B	A	-	-	A	B	-	A	A	A	-	-	A	A	B	A	B	B	A	B	B	B	A	A	-	A	B	A	B	B	B	A	A	A	A	A	B	B	B	A	A	A	B	B	B
RosBREEDSNP_SNP_TC_6078897_Lg5_MDP0000162861_MAF10_MDP0000162861_exon6	-	A	A	A	A	A	A	B	A	A	A	-	A	A	A	A	A	A	B	A	A	B	B	A	-	A	A	A	-	-	A	A	A	B	A	B	-	-	A	A	A	-	-	-	-	A	-	-	A	A	A	B	A	-	-	B	A	A	-	-	A	-	-	A	A	B	A	B	A	B	A	A	A	B	A	-	-	A	-	-	B	A	A	A	A	-	-	-	A	B	-	-	A	B	-	A	A	A	A	A	A	A	B	A	A	A	A	A	B	A	A	-	A	-	-	A	A	A	A	B	A	A	A	A	A	B	A	-	-	-	-	A	A
RosBREEDSNP_SNP_TG_6165596_Lg5_01333_MAF20_MDP0000174971_exon3	A	A	A	A	A	A	A	B	B	A	A	B	B	-	-	-	-	-	-	B	A	B	B	A	-	B	A	A	-	-	B	A	A	-	-	-	-	-	A	A	A	A	B	B	B	A	A	B	-	A	A	B	A	A	A	B	A	A	A	B	B	A	A	A	A	B	A	B	A	A	A	A	B	-	-	-	-	A	B	A	B	-	-	B	B	-	A	A	A	B	-	-	A	B	B	A	A	B	A	A	A	A	B	A	B	A	A	A	B	A	A	A	B	B	B	B	A	A	B	A	B	A	B	B	B	A	A	A	B	-	-	B	A

Alignments

Feature Name	Type	Location	Analysis
Chr05	chromosome	Chr05:43024348..43484741.	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation