Mdo-HB-04-8

Haplotype Block Overview
Name Mdo-HB-04-8
Species Malus x domestica
Stock Haplotype [view all 400]
Haplotype [view all]
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 13 2
Rome Beauty Law 3 6
Jonafree 13 5
Redfree 3 52
Spartan 2 5
Wagener 13 5
Worcester Pearmain 13 3
Tsugaru 3
Golden Delicious 2 3
Fuji 2 3
Empire 3 6
Gala 3 5
Honeycrisp 3 4
Elstar 13 2
Marshall McIntosh 2 6
Cripps Pink 2 5
Granny Smith 5 6
Jonathan 13 3
Delicious 3 5
Discovery 3
Prima 13 4
Fiesta 2 3
Ingrid Marie 13 2
Idared 3 5
Esopus Spitzenburg 2 3
Braeburn 3
Sansa 13 5
Lodi 3 4
James Grieve 13 5
Cripps Red 3
Burgundy 3 4
Akane 13 3
Ambrosia 3
Aurora Golden Gala 3
Beacon 20 21
Ben Davis 3 4 5
Cameo 2 3
Chinook 3
Clivia 13 5
Co-op 17 5 6
Co-op 18 13 5
Dayton 13 2 3
Delblush 3
Delorgue 13 4
Dolgo 4
Geheimrat Dr. Oldenburg 4 5
Duchess of Oldenburg 4
Early Cortland 2 3 5
Empress 13 2
F2 26829-2-2 4 6
Fantazja 3 6
Fireside 3
Fortune 2 3
Frostbite 3 4
Ginger Gold 2 3
GMAL 4327 16 3
GMAL 4328 16 3
GMAL 4329 7
GMAL 4332 3 5
Goodland 4
Haralson 3 4
Honeygold 3
Hudson 5 6
Jonamac 13 6
Keepsake 3 5
Kerr 3 4
Lady Williams 3 5
Liberty 4 6
Linda 3 5
Longfield 54 55
Macoun 2 6
Malinda 2 3
Mantet 3
Melba 13 2
Melrose 13 5
MN 1627 3 4
MN 1628 3 5
MN 1691 3 4
MN 1706 3 4
MN 1708 3 5
MN 1760 3
MN 1764 3
MN 1789 4
MN 1802 4 5
MN 1836 3 5
MN 1837 3 4
MN 1839 3 4
MN 1888 4
MN 1899 3 4
MN 1940 13 4
MN 2016 2 4
AA-44 3 4
Monroe 3 6
Montgomery 3 4
Nicola 3 5
NJ 31 5
NJ 53 2 4
Oriole 13 4
PRI 14-126 3 4
PRI 14-510 4
PRI 1661-2 5 6
PRI 54-12 4
PRI 855-102 13
Primula 2 4
Raritan 3
Regent 3 6
Russian Seedling 16 5
Sawa 2 3
Sciros 3 5
Sharon 2
Silken 2 3
Wildung 2 3
Splendour 3
State Fair 3 4
NJ 55 2 5
Co-op 29 2 4
Sunrise 2 3
Sweet Sixteen 3 5
Topaz 13 3
Vista Bella 2 4
Wealthy 3 4
Winesap 4 5
Winter Banana 2 3
Yellow Newtown 2 3
Yellow Transparent 2 4
0407-0001 3
0407-0005 3
0407-0006 2 3
0407-0007 2 3
0407-0008 2 3
0408-0003 3 5
0408-0004 13 3
0408-0005 3 5
0408-0007 13 3
0408-0008 3 5
0408-0010 3 5
0408-0011 3 5
0408-0014 3 5
0408-0015 13 3
0409-0022 3
0409-0024 3 4
0409-0028 3 4
0409-0030 3 4
0409-0032 3 4
0409-0035 3 4
0409-0036 3 4
0409-0038 3 4
0409-0039 3
0409-0040 3 4
0409-0043 3 4
0409-0045 3 4
0410-0002 3 5
0410-0003 3 5
0410-0005 3 5
0410-0006 3 5
0410-0010 3 5
0410-0011 3 5
0410-0012 3 5
0410-0013 3 5
0410-0015 3 5
0410-0017 3 6
0410-0018 3 5
0414-0010 2 3
0414-0015 3
0414-0017 2 4
0414-0018 13 4
0414-0019 2 4
0414-0020 13 3
0414-0021 2 4
0415-0001 4 5
0415-0004 4 5
0415-0005 4 5
0415-0011 3 5
0415-0012 3 5
0415-0014 3
0415-0016 13 3
0415-0017 13 3
0415-0019 13 4
0415-0020 4 5
0415-0025 13 4
AE_HCxJonf-145 13 4
AE_HCXJonf-148 13 3
AE_HCxJonf-157 3 5
AE_HCXJonf-162 13 4
AE_HCXJonf-168 2 4
AE_HCxJonf-175 3 5
AE_HCxJonf-183 4 5
AE_HCxJonf-185 13 3
AE0118-237 3
AE0118-238 3 6
AE0118-239 3 4
AE0118-240 4 6
AE0118-243 3
AE0118-244 3 4
AE0118-245 4 6
AE0118-246 3 6
AE0118-249 3
AE0206-159 4 5
AE0206-160 4 5
AE0206-161 3 4
AE0206-162 3 4
AE0206-163 4 5
AE0206-164 3 4
AE0206-165 4 5
AE0206-167 4 5
AE0206-168 3 4
AE0206-169 4 5
AE0206-170 4 5
AE0210-152 3 4
AE0213-175 3 5
AE0213-176 2 3
AE0213-177 3
AE0213-178 3 5
AE0213-179 3
AE0213-180 3
AE0213-181 3
AE0213-182 2 3
AE0213-183 2 3
AE0213-186 3
AE0213-187 2 5
AE0213-190 3
AE0213-193 3
AE0213-194 3
AE0213-195 3
AE0213-196 3 5
AE0213-197 3
AE0213-198 3 4
AE0213-199 3
AE0213-200 3 5
AE0213-201 2 3
AE0213-202 3
AE0213-205 3 5
AE0213-206 3
AE0251-323 3 5
AE0251-325 3 5
AE0251-327 5
AE0251-329 3
AE0251-330 5
AE0251-331 5
AE0251-342 5
AE0251-343 3
AE0406-239 2 4
AE0406-254 3
AE0406-258 3 4
AE0406-259 3 4
AE0406-263 2 4
AE0406-264 3
AE0406-266 2 4
AE0406-271 3 4
AE0406-274 2 3
AE0406-278 2 4
AE0406-281 3
AE0406-286 2 4
AE0406-288 3
AE0406-289 3
AE0406-294 3 4
AE0406-298 3
Minneiska 4
NJ 303955 5
PRI 612-1 4 5
Arlet 2 3
Co-op 39 2 3
Pinova 2 5
Scired 3 5
Scifresh 3
0409-0025 3
0409-0026 3 4
0409-0027 3
0409-0031 3 4
0409-0033 3 4
0409-0047 3 4
G-14-050 2
G-14-052 2 3
G-14-054 2
G-14-055 2
G-14-056 2 3
G-14-057 2 3
G-14-059 2 3
G-14-060 2 3
G-14-061 2
G-14-062 2 5
G-14-064 2 3
G-14-065 2 5
G-14-069 2 3
G-14-067 2 3
G-14-068 2 3
G-14-071 3 5
G-14-073 2
G-14-074 2 5
G-14-075 2
G-14-076 2
G-14-077 2
G-14-078 2 5
G-14-080 2 5
G-09-232 2 3
G-09-233 3
G-09-234 3
G-09-235 2 3
G-09-236 2 3
G-09-237 3
G-09-238 2 3
G-09-239 3
G-09-240 3
G-09-241 3
G-09-242 2 3
G-09-243 2 3
G-09-245 3
G-09-246 3
G-09-258 2 3
G-09-259 3
G-09-260 2 3
G-09-261 3
G-09-262 2 3
G-09-263 2 3
G-09-264 3
G-09-265 2 3
G-09-266 2 3
G-09-267 2 3
G-09-268 2 3
0408-0021 13 3
Wijcik McIntosh 19 53
Beauty of Bath 3 45
Priam 13 4
Northern Spy 3 5
Co-op 15 2 5
MN 1702 3 4
WA 2 3 5
WA 5 2 3
Pitmaston Pineapple 2 3
0411-0011 13 3
0411-0017 3 5
0411-0023 3 5
AE0250-086 3 5
AE0250-087 3
AE0250-089 3 5
AE0250-090 3
AE0250-092 3
AE0250-093 3 5
AE0250-094 3
AE0250-095 3 5
Sonya 3
Co-op 38 3 6
AE0250-096 2 4
AE0250-327 2 4
Co-op 30 13 5
AE0211-036 3
G-07-039 3 5
G-07-041 13 2
BC-8S-27-43 3 5
AE0250-091 3
AE0250-097 16 3
AE0250-325 16 3
AE0250-326 3
AE0250-329 3 4
AE0250-333 16 4
AE0250-334 16 3
AE0250-335 3
AE0250-336 3 4
AE0250-338 3 4
AE0250-341 16 4
AE0211-038 3
AE0211-043 16 2
AE0211-045 16 2
AE0211-051 3
G-07-010 13 5
G-07-014 5
G-07-015 13 6
G-07-019 5 6
G-07-020 13 6
G-07-024 13 5
G-07-032 13 6
G-07-033 13 5
G-07-034 13 5
G-07-035 13 6
G-07-044 5
AE0211-053 3 4
AE0211-054 2 4
AE0250-088 4
AE0250-324 4
AE0250-328 3 4
AE0250-331 4
AE0250-332 3 4
AE0250-337 4
AE0250-339 4
Minnewashta 4
Autumn Crisp 3
G-14-066 2
Lu1-11-010 2
Lu1-11-013 2 5
Lu1-11-016 2 3
Lu1-11-017 2
Lu1-11-018 2 5
NJ 90 2 5
Lord Lambourne 13 3
Antonovka GH 4
Kidds Orange Red 13 5
Malus baccata Hansen #2 19 56
Malus baccata Jackii 4
Summerred 3 57
William's Pride 3 6
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-04-8Apple-RosBREED-3.9K-2019413.3513.35
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Haplotypes
Marker 23456789101112131415161718192021222324252627282930313233343536373839404142434445464748495051525354555657585960
RosBREEDSNP_SNP_AG_9924291_Lg15_MDP0000157164_MAF10_MDP0000157164_exon2AABABABB---AAAAABAAB-AB---A-A-A--ABAB----AAAAAABABBBBABB---
RosBREEDSNP_SNP_AG_9924715_Lg15_MDP0000157164_MAF30_MDP0000157164_exon4AABABABB---AAAAAABBA-AB---A-A-A--ABAB----AAAAAABABBABAABBA-
RosBREEDSNP_SNP_CT_9792492_Lg15_01989_MAF20_MDP0000264506_exon4BBBABBBBBABBAAA-BBBBBBBBBAB--B-AB--BBB--BBAABBABBBBBBBABBBA
RosBREEDSNP_SNP_CT_9811327_Lg15_01989_MAF10_MDP0000842841_exon1BBBBBBB--BBAABBBBBBBBBBBAB--BBBBA-------B-ABBA--BAABBBBBBB-
RosBREEDSNP_SNP_CT_9924033_Lg15_MDP0000157164_MAF20_MDP0000157164_exon1BBABABAA---BBBBBABAB-BA---B-B-B--BABA----BABBBBAABAABAAAAB-
RosBREEDSNP_SNP_GT_9789795_Lg15_01989_MAF30_MDP0000264506_exon1ABBBB--B-BBBB-A-ABBB------B-ABB----BBBBAA-ABB-BABBBABABBBB-
RosBREEDSNP_SNP_TC_9925764_Lg15_MDP0000157164_MAF20_MDP0000157164_exon8AAAABABA-AAAAAAAAAAAA-----AAA-AAA----AAAAAA--AAAAAABAAA-AA-
Alignments
Feature NameTypeLocationAnalysis
Chr04 chromosome Chr04:6679686..6847148. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation