Mdo-HB-04-46

Haplotype Block Overview
Name Mdo-HB-04-46
Species Malus x domestica
Stock Haplotype [view all 427]
Haplotype [view all]
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 11 5
Rome Beauty Law 16 5
Jonafree 5
Redfree 5
Spartan 5
Wagener 16 5
Worcester Pearmain 21 55
Tsugaru 4 5
Golden Delicious 4 5
Fuji 5
Empire 5
Gala 4 5
Honeycrisp 5
Elstar 5 7
Marshall McIntosh 5
Cripps Pink 16 4
Granny Smith 16 5
Jonathan 5
Ralls Janet 3 5
Delicious 14 5
Discovery 10 55
Prima 11 21
821 17
Fiesta 11 5
Ingrid Marie 5 7
Idared 16 5
Esopus Spitzenburg 11 5
Braeburn 21 5
Sansa 21 5
Lodi 5 7
James Grieve 11 7
Cripps Red 17 5
Burgundy 5
Akane 21 5
Ambrosia 4 5
Aurora Golden Gala 5
Beacon 17 30
Ben Davis 21 4 5 6
Cameo 5
Chinook 4 5
Clivia 11 5
Co-op 17 5
Co-op 18 5
Dayton 21 4 5
Delblush 4 5
Delcorf 17 50
Delorgue 17 5
Geheimrat Dr. Oldenburg 5 7
Duchess of Oldenburg 6 7
Early Cortland 5 6 7
Empress 5
F2 26829-2-2 21 5
Fantazja 42 5
Fireside 10 5
Fortune 4 5
Frostbite 10 5
Ginger Gold 4 7
GMAL 4327 14 7
GMAL 4328 14 7
GMAL 4329 39 6
GMAL 4332 42 6
Goodland 6
Haralson 5 7
Honeygold 4 5
Hudson 4 5
Jonamac 5
Keepsake 11 5
Lady Williams 16 17
Liberty 21 6
Linda 42 5
Liveland Raspberry 14 6
Longfield 10 6
Macoun 5 6
Malinda 5
Mantet 38 7
Melba 5 6
MN 1627 5 7
MN 1628 11 5
MN 1691 10 6
MN 1706 10 59
MN 1708 11 7
MN 1760 11 5
MN 1764 11 5
MN 1789 5 6
MN 1802 11 5
MN 1836 11 7
MN 1837 10 5
MN 1839 5 7
MN 1888 5 6
MN 1899 5
MN 1940 5 7
MN 2016 5 7
AA-44 5 7
Monroe 5
Montgomery 4 5
Nicola 5
NJ 31 5
NJ 53 5
Oriole 14 7
PRI 14-126 21 5
PRI 14-510 21 4
PRI 1661-2 5
PRI 54-12 21 7
PRI 855-102 5
Primula 5
Raritan 5
Regent 5
Russian Seedling 14 67
Sawa 5
Sciros 5
Sharon 5 6
Silken 4 5
Wildung 5
Splendour 5
State Fair 7
NJ 55 4 6
Co-op 29 5
Sunrise 5 7
Sweet Sixteen 11 5
Topaz 5 7
Vista Bella 5
Wealthy 5 7
Winesap 12 5
Winter Banana 5
Yellow Newtown 5
Yellow Transparent 5 7
0407-0001 16 5
0407-0005 16 5
0407-0006 16 5
0407-0007 5
0407-0008 16 5
0408-0003 5
0408-0004 5
0408-0005 5
0408-0007 5
0408-0008 5
0408-0010 5
0408-0011 5
0408-0014 5
0408-0015 5
0409-0022 5
0409-0024 5
0409-0028 5
0409-0030 5
0409-0032 5
0409-0035 5
0409-0036 5
0409-0038 5
0409-0039 5
0409-0040 5
0409-0043 5
0409-0045 5
0410-0002 16 5
0410-0003 16 5
0410-0005 5
0410-0006 16 5
0410-0010 16 5
0410-0011 16 5
0410-0012 16 5
0410-0013 5
0410-0015 16 5
0410-0017 16 5
0410-0018 16 5
0414-0010 16 5
0414-0015 5
0414-0017 5
0414-0018 5
0414-0019 5
0414-0020 5
0414-0021 16 5
0415-0001 5
0415-0004 5
0415-0005 5
0415-0011 5
0415-0012 5
0415-0013 5
0415-0014 11 5
0415-0016 5
0415-0017 5
0415-0019 5
0415-0020 5
0415-0025 5
AE_HCxJonf-145 5
AE_HCXJonf-148 5
AE_HCxJonf-157 5
AE_HCXJonf-162 5
AE_HCXJonf-168 4 5
AE_HCxJonf-175 5
AE_HCxJonf-183 5
AE_HCxJonf-185 5
AE0118-237 5
AE0118-238 5
AE0118-239 5 7
AE0118-240 5
AE0118-243 5
AE0118-244 5
AE0118-245 5
AE0118-246 5
AE0118-249 5
AE0206-159 4 7
AE0206-160 4 7
AE0206-161 4 6
AE0206-162 5 6
AE0206-163 5 6
AE0206-164 4 7
AE0206-165 5 7
AE0206-167 5 7
AE0206-168 4 6
AE0206-169 5 7
AE0206-170 5 7
AE0210-146 5 6
AE0210-147 39 5
AE0210-149 5 6
AE0210-150 6 7
AE0210-151 5 6
AE0210-152 5 7
AE0210-153 39 5
AE0210-154 6 7
AE0210-157 6 7
AE0210-158 39 5
AE0210-159 39 5
AE0210-162 6 7
AE0210-163 6 7
AE0210-164 6 7
AE0210-165 39 7
AE0210-166 39 7
AE0210-168 39 5
AE0210-169 39 5
AE0210-170 39 7
AE0210-171 6 7
AE0210-172 6 7
AE0210-173 39 7
AE0210-174 39 5
AE0213-175 42 7
AE0213-176 6 7
AE0213-177 42 7
AE0213-178 4 6
AE0213-179 42 7
AE0213-180 42 7
AE0213-181 42 7
AE0213-182 42 7
AE0213-183 6 7
AE0213-186 42 7
AE0213-187 4 6
AE0213-190 6 7
AE0213-193 42 7
AE0213-194 42 7
AE0213-195 4 6
AE0213-196 4 6
AE0213-197 4 42
AE0213-198 21 7
AE0213-199 6 7
AE0213-200 42 7
AE0213-201 4 42
AE0213-202 6 7
AE0213-205 4 42
AE0213-206 4 42
AE0251-323 11 4
AE0251-327 11 4
AE0251-329 4 5
AE0251-330 11 4
AE0251-331 4 5
AE0251-342 4 5
AE0251-343 11 4
AE0406-239 5
AE0406-254 4 5
AE0406-258 4 5
AE0406-259 4 5
AE0406-263 4 5
AE0406-264 4 5
AE0406-266 5
AE0406-271 5
AE0406-274 5
AE0406-278 4 5
AE0406-281 5
AE0406-286 5
AE0406-288 4 5
AE0406-289 5
AE0406-294 5
AE0406-298 4 5
Minneiska 5 7
NJ 303955 6
PRI 612-1 21 5
Arlet 16 5
Co-op 39 5
Pinova 11 5
Scired 5
Scifresh 21 5
0409-0025 5
0409-0026 5
0409-0027 5
0409-0031 5
0409-0033 5
0409-0047 5
G-14-050 5
G-14-052 5
G-14-054 5
G-14-055 5
G-14-056 5
G-14-057 11 5
G-14-059 5
G-14-060 5
G-14-061 5
G-14-062 11 5
G-14-064 11 5
G-14-065 11 5
G-14-069 5
G-14-067 11 5
G-14-068 11 5
G-14-071 5
G-14-073 5
G-14-074 5
G-14-075 5
G-14-076 5
G-14-077 11 5
G-14-078 11 5
G-14-080 11 5
G-09-232 21 7
G-09-233 4 5
G-09-234 5 7
G-09-235 21 7
G-09-236 4 5
G-09-237 4 5
G-09-238 5 7
G-09-239 21 4
G-09-240 21 4
G-09-241 21 7
G-09-242 5 7
G-09-243 4 5
G-09-245 21 7
G-09-246 5 7
G-09-258 4 5
G-09-259 4 5
G-09-260 4 5
G-09-261 21 7
G-09-262 5 7
G-09-263 21 7
G-09-264 21 4
G-09-265 5 7
G-09-266 21 7
G-09-267 21 4
G-09-268 4 5
0408-0021 5
Wijcik McIntosh 5
Beauty of Bath 10
Priam 5
Northern Spy 11 4
Co-op 15 11 21
MN 1702 5
WA 2 4 5
WA 5 11 5
Pitmaston Pineapple 11 5
0411-0011 5
0411-0017 16 5
0411-0023 5
AE0250-086 11 5
AE0250-087 11 5
AE0250-089 5
AE0250-090 4 5
AE0250-092 4 5
AE0250-093 11 4
AE0250-094 4 5
AE0250-095 4 5
Sonya 21 4
Co-op 38 4 5
AE0250-096 5 6
AE0250-327 4 6
Co-op 30 5
Jonagrimes 2 7
AE0211-036 7
G-07-039 5
PRI 14-152 21 4
PRI 47-176 5
G-07-041 21 5
BC-8S-27-43 4 5
AE0250-091 5 7
AE0250-097 14 5
AE0250-325 14 5
AE0250-326 14 5
AE0250-329 14 5
AE0250-333 14 5
AE0250-334 5 7
AE0250-335 5 7
AE0250-336 5 7
AE0250-338 5 7
AE0250-341 14 5
AE0211-038 14 4
AE0211-043 14 4
AE0211-045 14 4
AE0211-051 14 7
G-07-010 21 5
G-07-014 5
G-07-015 16 21
G-07-019 5
G-07-020 16 5
G-07-024 21 5
G-07-032 21 5
G-07-033 16 21
G-07-034 16 21
G-07-035 16 21
G-07-044 21 5
AE0211-053 7
AE0211-054 7
AE0250-088 5 6
AE0250-324 5 7
AE0250-328 5 6
AE0250-331 5 7
AE0250-332 5 7
AE0250-337 5 7
AE0250-339 5 7
Minnewashta 6 7
Autumn Crisp 5
G-14-066 5
Lu1-11-010 5
Lu1-11-013 5
Lu1-11-016 5
Lu1-11-017 5 6
Lu1-11-018 5
NJ 90 5
Lord Lambourne 21 7
Antonovka GH 14 5
Grimes Golden 2 4
Kidds Orange Red 11 5
Malus baccata Hansen #2 10 6
Malus baccata Jackii 17
Summerred 31 71
William's Pride 11 5
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-04-46Apple-RosBREED-3.9K-2019461.2561.67
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Haplotypes
Marker 23456789101112131415161718192021222324252627282930313233343536373839404142434445464748495051525354555657585960616263646566676869707172737475
GDsnp00136--ABAB--AB--B-BB---BABAB-AB-BAB------B--BB-----BAAB--BBABB-BABBBBBABAB-BAB
GDsnp00523AAABAAABABBBBBBABBAAABABAAB-BBA------ABABBAAA------BAA--BBAAA-BBBABABAAAAB
MdFT2--AAAAAAAAAAA-BAB--A--AAAAAAAAAAAA-AAA--AA---AA--AA--A--AAAA-AABBABA--AAAA
RosBREEDSNP_SNP_CT_25012657_Lg4_00136_MAF20_1634110_exon5BBBBBBBBBBBBBBABA--BBBBBBBBBBBBBBB-BBBBBBB--BBB--BB--B--BBBB-B--ABBB--BBBA
RosBREEDSNP_SNP_CT_25034592_Lg4_00136_MAF10_1687814_exon1BBBBAAABABBBBBBBBBBBBBBBBBBBABBABBB--BBAABABA----AA--A--BBBAABBBBABABAABAB
RosBREEDSNP_SNP_CT_25043574_Lg4_00136_MAF10_MDP0000144203_exon3BAABAB--BBBBBBBBBBBBABABAABABBA----BABABB---BBB--AB--ABABABB-BBBBBAB--ABAB
RosBREEDSNP_SNP_GA_25047666_Lg4_00136_MAF40_MDP0000144202_exon1BBBBBBBBBAABABABA--A--BBB--BBBBBB----BBAB-BABBA--BBBABAB-BAABABABBBABBBABA
RosBREEDSNP_SNP_TC_25055592_Lg4_00136_MAF30_MDP0000308806_exon2AAAAAAAAABAAAABAB--B----A--AAAAAA----BABB-ABAAB--AAABA--AABBABABABAAAAA--B
Alignments
Feature NameTypeLocationAnalysis
Chr04 chromosome Chr04:32034531..32863231. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation