Mdo-HB-04-32

Haplotype Block Overview
Name Mdo-HB-04-32
Species Malus x domestica
Stock Haplotype [view all 428]
Haplotype [view all]
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 5 7
Rome Beauty Law 5 7
Jonafree 5
Redfree 15 6
Spartan 5 6
Wagener 5 7
Worcester Pearmain 4 5
Tsugaru 5
Golden Delicious 4 5
Fuji 5 6
Empire 5 6
Gala 4 6
Honeycrisp 6
Elstar 4 6
Marshall McIntosh 5
Cripps Pink 4 6
Granny Smith 5 6
Jonathan 5
Ralls Janet 3 5
Delicious 5 6
Discovery 5 6
Prima 5 6
Fiesta 5
Ingrid Marie 6 7
Idared 5
Esopus Spitzenburg 5 7
Braeburn 6
Sansa 5 6
Lodi 6 7
James Grieve 5
Cripps Red 5 7
Burgundy 5
Akane 4 5
Ambrosia 4 6
Aurora Golden Gala 5 6
Beacon 6
Ben Davis 4 5 6
Cameo 5 6
Chinook 4 5
Clivia 5 6
Co-op 17 5 7
Co-op 18 5
Dayton 4 5 6
Delblush 4 5
Delorgue 5
Dolgo 6
Geheimrat Dr. Oldenburg 6
Duchess of Oldenburg 6
Early Cortland 4 5 6
Empress 5
F2 26829-2-2 5 7
Fantazja 5
Fireside 5
Fortune 6 7
Frostbite 5 6
Ginger Gold 4 7
GMAL 4327 5
GMAL 4328 5 6
GMAL 4329 5 6
GMAL 4332 5 6
Goodland 6
Haralson 6
Honeygold 4 6
Hudson 5 6
Jersey Black 5
Jonamac 5
Keepsake 5 6
Kerr 6
Lady Williams 6 7
Liberty 5 6
Linda 5
Longfield 5 6
Macoun 5
Malinda 5 6
Mantet 5
Melba 5 6
MN 1627 5 6
MN 1628 5 6
MN 1691 5 6
MN 1706 5 6
MN 1708 5 6
MN 1760 5 6
MN 1764 5
MN 1789 6
MN 1802 5 6
MN 1836 5 6
MN 1837 5
MN 1839 6
MN 1888 5 6
MN 1899 5 6
MN 1940 5
MN 2016 5
AA-44 4 6
Monroe 5 7
Montgomery 6 7
Nicola 5 6
NJ 31 5
NJ 53 5
Oriole 6
PRI 14-126 5
PRI 14-510 5
PRI 1661-2 5 6
PRI 54-12 5 6
PRI 855-102 5
Primula 5
Raritan 5
Regent 5 6
Russian Seedling 5
Sawa 5
Sciros 5 6
Sharon 5 6
Silken 4 5
Wildung 5
Splendour 5
State Fair 5 6
NJ 55 4
Co-op 29 5
Sunrise 5 6
Sweet Sixteen 5 6
Topaz 5
Vista Bella 5
Wealthy 5 6
Winesap 5 6
Winter Banana 6
Yellow Newtown 4 7
Yellow Transparent 4 6
0407-0001 5
0407-0005 5 6
0407-0006 5
0407-0007 5
0407-0008 5
0408-0003 5
0408-0004 5 6
0408-0005 5
0408-0007 5 6
0408-0008 5 6
0408-0010 5 6
0408-0011 5
0408-0014 5 6
0408-0015 5 7
0409-0022 6
0409-0024 6
0409-0028 5 6
0409-0030 5 6
0409-0032 6
0409-0035 5 6
0409-0036 5 6
0409-0038 6
0409-0039 5 6
0409-0040 5 6
0409-0043 5 6
0409-0045 6
0410-0002 6
0410-0003 5
0410-0005 5 6
0410-0006 5 6
0410-0010 5 6
0410-0011 5 6
0410-0012 5 6
0410-0013 5 6
0410-0015 5 6
0410-0017 5 6
0410-0018 5 6
0414-0010 5 6
0414-0015 5 6
0414-0017 5 6
0414-0018 6 7
0414-0019 5 6
0414-0020 6 7
0414-0021 5 6
0415-0001 5 6
0415-0004 5 6
0415-0005 5 6
0415-0011 6 7
0415-0012 6 7
0415-0013 6 7
0415-0014 5 6
0415-0016 6 7
0415-0017 6 7
0415-0019 6 7
0415-0020 5 6
0415-0025 5 6
AE_HCxJonf-145 5 6
AE_HCXJonf-148 5 6
AE_HCxJonf-157 5 6
AE_HCXJonf-162 5 6
AE_HCXJonf-168 4 6
AE_HCxJonf-175 5 6
AE_HCxJonf-183 5 6
AE_HCxJonf-185 5 6
AE0118-237 5 6
AE0118-238 5 6
AE0118-239 6
AE0118-240 5 6
AE0118-243 6
AE0118-244 6
AE0118-245 5 6
AE0118-246 5 6
AE0118-249 6
AE0206-159 4 5
AE0206-160 4 5
AE0206-161 4 5
AE0206-162 5 6
AE0206-163 5
AE0206-164 4 5
AE0206-165 4 5
AE0206-167 5
AE0206-168 4 6
AE0206-169 4 5
AE0206-170 5
AE0210-146 5 6
AE0210-147 5
AE0210-149 6
AE0210-150 6
AE0210-151 5 6
AE0210-152 5
AE0210-153 5
AE0210-154 6
AE0210-157 6
AE0210-158 5
AE0210-159 5 6
AE0210-162 6
AE0210-163 6
AE0210-164 6
AE0210-165 6
AE0210-166 5 6
AE0210-168 5
AE0210-169 5
AE0210-170 5
AE0210-171 5 6
AE0210-172 6
AE0210-173 6
AE0210-174 5 6
AE0213-175 5 7
AE0213-176 6 7
AE0213-177 5 7
AE0213-178 4 6
AE0213-179 5 7
AE0213-180 5 7
AE0213-181 5 7
AE0213-182 5 7
AE0213-183 4 6
AE0213-186 5 7
AE0213-187 4 5
AE0213-190 6 7
AE0213-193 5 7
AE0213-194 5 7
AE0213-195 4 6
AE0213-196 4 6
AE0213-197 6 7
AE0213-198 5 7
AE0213-199 6 7
AE0213-200 5 7
AE0213-201 4 5
AE0213-202 6 7
AE0213-205 4 5
AE0213-206 4 5
AE0251-323 4 5
AE0251-325 5 6
AE0251-327 4 5
AE0251-329 4 6
AE0251-330 4 5
AE0251-331 4 5
AE0251-342 4 5
AE0251-343 4 5
AE0406-239 5 6
AE0406-254 4 6
AE0406-258 4 6
AE0406-259 4 6
AE0406-263 5 6
AE0406-264 4 6
AE0406-266 5 6
AE0406-271 6
AE0406-274 5 6
AE0406-278 4 6
AE0406-281 5 6
AE0406-286 5 6
AE0406-288 4 6
AE0406-289 5 6
AE0406-294 4 6
AE0406-298 4 6
Minneiska 5 6
NJ 303955 4
PRI 612-1 5 6
Arlet 5
Co-op 39 5
Pinova 5
Scired 5 6
Scifresh 6
0409-0025 6
0409-0026 5 6
0409-0027 5 6
0409-0031 5 6
0409-0033 6
0409-0047 6
G-14-050 5
G-14-052 5
G-14-054 5
G-14-055 5
G-14-056 5
G-14-057 5
G-14-059 5
G-14-060 5
G-14-061 5
G-14-062 5
G-14-064 5
G-14-065 5
G-14-069 5
G-14-067 5
G-14-068 5
G-14-071 5
G-14-073 5
G-14-074 5
G-14-075 5
G-14-076 5
G-14-077 5
G-14-078 5
G-14-080 5
G-09-232 6 7
G-09-233 6 7
G-09-234 6 7
G-09-235 6 7
G-09-236 4 6
G-09-237 4 6
G-09-238 6 7
G-09-239 6 7
G-09-240 6 7
G-09-241 6 7
G-09-242 6 7
G-09-243 4 6
G-09-245 6 7
G-09-246 6 7
G-09-258 4 6
G-09-259 6 7
G-09-260 4 6
G-09-261 6 7
G-09-262 6 7
G-09-263 6 7
G-09-264 4 6
G-09-265 6 7
G-09-266 6 7
G-09-267 4 6
G-09-268 4 6
0408-0021 5 7
Wijcik McIntosh 5
Beauty of Bath 13 6
Priam 5
Northern Spy 5
Co-op 15 5 6
MN 1702 5
WA 2 4 5
WA 5 5 6
Pitmaston Pineapple 5 7
0411-0011 5 7
0411-0017 5
0411-0023 5
AE0250-086 5
AE0250-087 5 6
AE0250-089 5
AE0250-090 4 6
AE0250-092 4 6
AE0250-093 4 5
AE0250-094 4 6
AE0250-095 4 6
Sonya 4 6
Co-op 38 4 7
AE0250-096 5 6
AE0250-327 5 6
Co-op 30 5 7
Jonagrimes 2 6
AE0211-036 6 7
G-07-039 5 6
PRI 14-152 4 5
PRI 47-176 5 7
G-07-041 5
BC-8S-27-43 4 5
AE0250-091 5 6
AE0250-097 5 6
AE0250-325 5 6
AE0250-326 5 6
AE0250-329 5 6
AE0250-333 5 6
AE0250-334 5 6
AE0250-335 5 6
AE0250-336 5 6
AE0250-338 5 6
AE0250-341 5 6
AE0211-038 4 6
AE0211-043 4 5
AE0211-045 4 5
AE0211-051 6 7
G-07-010 5 6
G-07-014 6
G-07-015 5
G-07-019 6
G-07-020 5 6
G-07-024 5 6
G-07-032 5 6
G-07-033 5 6
G-07-034 5 6
G-07-035 5
G-07-044 5 6
AE0211-053 5 7
AE0211-054 4 5
AE0250-088 6
AE0250-324 5 6
AE0250-328 6
AE0250-331 5 6
AE0250-332 6
AE0250-337 5 6
AE0250-339 5 6
Minnewashta 5 6
Autumn Crisp 5
G-14-066 5
Lu1-11-010 5
Lu1-11-013 4 5
Lu1-11-016 5 6
Lu1-11-017 5 6
Lu1-11-018 5 6
NJ 90 5
Lord Lambourne 4 5
Antonovka GH 5 6
Grimes Golden 2 4
Kidds Orange Red 5 6
Malus baccata Hansen #2 4 6
Malus baccata Jackii 6
Summerred 10
William's Pride 5 7
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-04-32Apple-RosBREED-3.9K-2019445.6945.69
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Haplotypes
Marker 23456789101112131415161718
GDsnp01773BAABBBBBBB---B---
RosBREEDSNP_SNP_GA_20509315_Lg4_01773_MAF20_985247_exon1--BBBA--BABABAB--
RosBREEDSNP_SNP_TC_20552378_Lg4_01773_MAF50_519325_exon1ABBABB-B---BAABBA
Alignments
Feature NameTypeLocationAnalysis
Chr04 chromosome Chr04:27628907..27670189. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation