Mdo-HB-04-25

Haplotype Block Overview
Name Mdo-HB-04-25
Species Malus x domestica
Stock Haplotype [view all 428]
Haplotype [view all]
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 16 7
Rome Beauty Law 4
Jonafree 4 6
Redfree 23 33
Spartan 5 7
Wagener 17 4
Worcester Pearmain 6 8
Tsugaru 16 4
Golden Delicious 4
Fuji 4 6
Empire 4 5
Gala 16 4
Honeycrisp 4 6
Elstar 4 6
Marshall McIntosh 4 7
Cripps Pink 4 7
Granny Smith 4 7
Jonathan 16 4
Ralls Janet 4
Delicious 5 6
Discovery 35 8
Prima 4
821 13
Fiesta 16 7
Ingrid Marie 6 7
Idared 16 4
Esopus Spitzenburg 16 7
Braeburn 19 6
Sansa 16 4
Lodi 4 6
James Grieve 16 6
Cripps Red 4 6
Burgundy 16 6
Akane 4 6
Ambrosia 4 5
Aurora Golden Gala 16 6
Beacon 34 35
Ben Davis 4 5 6
Cameo 4 6
Chinook 4 6
Clivia 16 19
Co-op 17 4 5
Co-op 18 4 6
Dayton 4 6 7
Delblush 4
Delcorf 4
Delorgue 4
Dolgo 6
Geheimrat Dr. Oldenburg 19 6
Duchess of Oldenburg 5 6
Early Cortland 4 6
Empress 4 7
F2 26829-2-2 4
Fantazja 4
Fireside 4
Fortune 4 7
Frostbite 4 7
Ginger Gold 4
GMAL 4327 32 4
GMAL 4328 25 4
GMAL 4329 4 7
GMAL 4332 32 6
Goodland 16 6
Haralson 4 6
Honeygold 4
Hudson 5 6
Jersey Black 31 4
Jonamac 4
Keepsake 4 6
Kerr 4 6
Lady Williams 6 7
Liberty 4 6
Linda 4
Longfield 4 59
Macoun 4
Malinda 4 7
Melba 6 7
MN 1627 4 6
MN 1628 4 6
MN 1691 4 6
MN 1706 4
MN 1708 6
MN 1760 4 7
MN 1764 4 7
MN 1789 6
MN 1802 4 6
MN 1836 4 6
MN 1837 4 6
MN 1839 4 6
MN 1888 6
MN 1899 4
MN 1940 4
MN 2016 4 6
AA-44 4 6
Monroe 16 4
Montgomery 4 6
Nicola 16 6
NJ 31 4 6
NJ 53 45 7
Oriole 6
PRI 14-126 4
PRI 14-510 4
PRI 16-144 4
PRI 1661-2 4 5
PRI 54-12 4 6
PRI 855-102 4
Primula 4 7
Raritan 34 53
Regent 4 7
Russian Seedling 4
Sawa 4 7
Sciros 16 6
Sharon 6 7
Silken 4
Wildung 4 7
Splendour 4 6
State Fair 4 6
NJ 55 4 6
Co-op 29 4 7
Sunrise 4 6
Sweet Sixteen 4 6
Topaz 4 6
Vista Bella 6 7
Wealthy 4 6
Winesap 5 8
Winter Banana 4 7
Yellow Newtown 34 56
Yellow Transparent 6 7
0407-0001 16
0407-0005 16
0407-0006 4 6
0407-0007 4 6
0407-0008 16 4
0408-0003 5 6
0408-0004 5 6
0408-0005 5 6
0408-0007 16 4
0408-0008 5 6
0408-0010 16 5
0408-0011 5 6
0408-0014 16 5
0408-0015 16 4
0409-0022 16 4
0409-0024 6
0409-0028 6
0409-0030 6
0409-0032 16 6
0409-0035 6
0409-0036 6
0409-0038 16 6
0409-0039 16 4
0409-0040 6
0409-0043 6
0409-0045 4 6
0410-0002 6 7
0410-0003 4 6
0410-0005 6 7
0410-0006 16 4
0410-0010 6 7
0410-0011 7
0410-0012 16 4
0410-0013 6 7
0410-0015 16 7
0410-0017 4 6
0410-0018 16 7
0414-0010 4
0414-0015 4
0414-0017 4
0414-0018 4 6
0414-0019 4 6
0414-0020 4 6
0414-0021 16 6
0415-0001 5 6
0415-0004 5 6
0415-0005 5 6
0415-0011 4 5
0415-0012 4
0415-0013 4
0415-0014 4 7
0415-0016 4 6
0415-0017 4 6
0415-0019 4 6
0415-0020 5 6
0415-0025 5 6
AE_HCxJonf-145 4 6
AE_HCXJonf-148 4
AE_HCxJonf-157 4 6
AE_HCXJonf-162 4 6
AE_HCXJonf-168 4 6
AE_HCxJonf-175 4 6
AE_HCxJonf-183 4 6
AE_HCxJonf-185 4
AE0118-237 4 7
AE0118-238 4 7
AE0118-239 6
AE0118-240 4 7
AE0118-243 4
AE0118-244 4
AE0118-245 6 7
AE0118-246 4 7
AE0118-249 4
AE0206-159 4
AE0206-160 4
AE0206-161 4
AE0206-162 4 6
AE0206-163 4
AE0206-164 4 6
AE0206-165 4
AE0206-167 4
AE0206-168 4 6
AE0206-169 4
AE0206-170 4
AE0210-146 4 7
AE0210-147 4
AE0210-149 6 7
AE0210-150 6 7
AE0210-151 4 6
AE0210-152 4
AE0210-153 4
AE0210-154 4 7
AE0210-157 6 7
AE0210-158 4
AE0210-159 6 7
AE0210-162 4
AE0210-163 4 6
AE0210-164 6 7
AE0210-165 4 7
AE0210-166 6 7
AE0210-168 4
AE0210-169 4
AE0210-170 4 7
AE0210-171 4
AE0210-172 4 6
AE0210-173 6 7
AE0210-174 4 6
AE0213-175 32 4
AE0213-176 4 6
AE0213-177 32 4
AE0213-178 4 6
AE0213-179 32 4
AE0213-180 32 4
AE0213-181 32 4
AE0213-182 32 4
AE0213-183 4 6
AE0213-186 4 6
AE0213-187 32 4
AE0213-190 4 6
AE0213-193 4 6
AE0213-194 4 6
AE0213-195 4 6
AE0213-196 4 6
AE0213-197 4 6
AE0213-198 33 4
AE0213-199 4 6
AE0213-200 32 4
AE0213-201 32 4
AE0213-202 4 6
AE0213-205 32 4
AE0213-206 32 4
AE0251-323 4 6
AE0251-325 4
AE0251-327 4 6
AE0251-329 4
AE0251-330 4 6
AE0251-331 4 6
AE0251-342 4 6
AE0251-343 4
AE0406-239 4 6
AE0406-254 4
AE0406-258 4 6
AE0406-259 4 6
AE0406-263 4 6
AE0406-264 4
AE0406-266 4 6
AE0406-271 4 6
AE0406-274 4
AE0406-278 4 6
AE0406-281 4 6
AE0406-286 4 6
AE0406-288 4
AE0406-289 4
AE0406-294 4 6
AE0406-298 4
Minneiska 4
NJ 303955 6
PRI 612-1 4 5
Arlet 16 4
Co-op 39 28 51
Pinova 16 4
Scired 16 6
Scifresh 19 4
0409-0025 4 6
0409-0026 6
0409-0027 4 6
0409-0031 4 6
0409-0033 16 6
0409-0047 16 6
G-14-050 4
G-14-052 16 4
G-14-054 16 4
G-14-055 16 4
G-14-056 16 4
G-14-057 16
G-14-059 16 4
G-14-060 4
G-14-061 4
G-14-062 16
G-14-064 4
G-14-065 16 4
G-14-069 4
G-14-067 16
G-14-068 16
G-14-071 16 4
G-14-073 4
G-14-074 16
G-14-075 4
G-14-076 4
G-14-077 4
G-14-078 16
G-14-080 16
G-09-232 19 4
G-09-233 4 6
G-09-234 19 4
G-09-235 19 4
G-09-236 4 6
G-09-237 19 4
G-09-238 4 6
G-09-239 4 6
G-09-240 19 4
G-09-241 19 4
G-09-242 4 6
G-09-243 4 6
G-09-245 19 4
G-09-246 4 6
G-09-258 4 6
G-09-259 4 6
G-09-260 4 6
G-09-261 19 4
G-09-262 4 6
G-09-263 19 4
G-09-264 4 6
G-09-265 19 4
G-09-266 19 4
G-09-267 19 4
G-09-268 4 6
0408-0021 4 6
Wijcik McIntosh 54 55
Beauty of Bath 34 35
Priam 4
Northern Spy 6 7
Co-op 15 4
MN 1702 4 7
WA 2 16 6
WA 5 4
Pitmaston Pineapple 16 7
0411-0011 16 4
0411-0017 16 5
0411-0023 16 5
AE0250-086 4 6
AE0250-087 4
AE0250-089 4 6
AE0250-090 4
AE0250-092 4
AE0250-093 4 6
AE0250-094 4
AE0250-095 4
Sonya 4 6
Co-op 38 4
AE0250-096 6 7
AE0250-327 6 7
Co-op 30 4 5
Jonagrimes 4 6
AE0211-036 4 6
G-07-039 16 4
PRI 14-152 4
G-07-041 4
BC-8S-27-43 4
AE0250-091 4 6
AE0250-097 32 4
AE0250-325 32 4
AE0250-326 4
AE0250-329 4 6
AE0250-333 32 6
AE0250-334 32 4
AE0250-335 4
AE0250-336 4 6
AE0250-338 32 6
AE0250-341 32 6
AE0211-038 4
AE0211-043 25 4
AE0211-045 25 4
AE0211-051 4
G-07-010 4 7
G-07-014 16 7
G-07-015 4
G-07-019 16 4
G-07-020 16 4
G-07-024 4 7
G-07-032 4 7
G-07-033 4 7
G-07-034 4 7
G-07-035 4
G-07-044 4 7
AE0211-053 4
AE0250-088 4 6
AE0250-324 6
AE0250-328 6
AE0250-331 4 6
AE0250-332 6
AE0250-337 4
AE0250-339 6
Minnewashta 4 6
Autumn Crisp 16 4
G-14-066 4
Lu1-11-010 4 7
Lu1-11-013 4 6
Lu1-11-016 6 7
Lu1-11-017 6 7
Lu1-11-018 4 6
NJ 90 4 7
Lord Lambourne 6
Antonovka GH 6
Grimes Golden 3 4
Kidds Orange Red 16 5
Malus baccata Hansen #2 6
Malus baccata Jackii 12 6
Summerred 28 51
William's Pride 4 7
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-04-25Apple-RosBREED-3.9K-2019432.7233.02
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Haplotypes
Marker 234567891011121314151617181920212223242526272829303132333435363738394041424344454647484950515253545556575859606162
RosBREEDSNP_SNP_AC_16057231_Lg4_01777_MAF40_1636609_exon4--ABBA--ABnull-ABnullnullABAA-ABA--A-A-AAAB----ABAAB-AABnullBnull-BAAnullABnullnullB-
RosBREEDSNP_SNP_GA_16093765_Lg4_01777_MAF30_MDP0000320984_exon2BABBBABB--BBBBBABAABAABB--BB-BABBBABABBB-BBBABBBABAAABABBA-AA
RosBREEDSNP_SNP_TC_16054869_Lg4_01777_MAF50_1657124_exon2--ABBAABABBBABBAAABAAABA--BAA-AABA--ABAB---A-AB-AAAAAAABABBBA
RosBREEDSNP_SNP_TC_16168045_Lg4_00321_MAF20_344464_exon1ABAAABAABAAAAAAB-BBABABA--AA-ABBAABABAAA-AABBAAAAAABABBAAB-BB
RosBREEDSNP_SNP_TC_16184302_Lg4_00321_MAF40_1638811_exon1ABAABBAABBBBBAABAABABBBBBAA--BAABABA-----ABBB--ABAABBAAABB-BB
RosBREEDSNP_SNP_TC_16191177_Lg4_00321_MAF50_MDP0000630319_exon2ABAABBAABBBBABABAAABBBBBBAAA-BAABAAB--AB-ABBB--ABAABABABAB-BA
Alignments
Feature NameTypeLocationAnalysis
Chr04 chromosome Chr04:22744458..22900497. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation