Mdo-HB-04-21

Haplotype Block Overview
Name Mdo-HB-04-21
Species Malus x domestica
Stock Haplotype [view all 428]
Haplotype [view all]
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 10 5
Rome Beauty Law 3
Jonafree 3 6
Redfree 6 96
Spartan 10 3
Wagener 10 4
Worcester Pearmain 70 9
Tsugaru 4 5
Golden Delicious 3 4
Fuji 3 9
Empire 3
Gala 3 5
Honeycrisp 3 6
Elstar 3 9
Marshall McIntosh 10 3
Cripps Pink 11 3
Granny Smith 11 3
Jonathan 3 5
Ralls Janet 3
Delicious 3 9
Discovery 65 70
Prima 3 4
821 16
Fiesta 10 5
Ingrid Marie 10 9
Idared 4 5
Esopus Spitzenburg 10 5
Braeburn 29 9
Sansa 3 5
Lodi 3 6
James Grieve 5 9
Cripps Red 12 4
Burgundy 5 6
Akane 3 9
Ambrosia 3 4
Aurora Golden Gala 5 9
Beacon 55 56
Ben Davis 3 4 9
Cameo 4 9
Chinook 3 9
Clivia 29 5
Co-op 17 3
Co-op 18 81 82
Dayton 3 9
Delblush 3 4
Delorgue 3
Dolgo 4 63
Geheimrat Dr. Oldenburg 29 9
Duchess of Oldenburg 5 6
Early Cortland 3 9
Empress 10 3
F2 26829-2-2 3 4
Fantazja 29 3
Fireside 3
Fortune 3
Frostbite 3 9
Ginger Gold 3
GMAL 4327 4 48
GMAL 4328 11 4
GMAL 4329 10 4
GMAL 4332 29 6
Goodland 5 6
Haralson 3 6
Honeygold 3
Hudson 3 6
Jersey Black 29
Jonamac 3
Keepsake 3 6
Kerr 3 4
Lady Williams 11 12
Liberty 3 6
Linda 29 3
Liveland Raspberry 69 9
Longfield 10 5
Macoun 29 3
Malinda 10 3
Mantet 10 43
Melba 10
Melrose 3
MN 1627 4 6
MN 1628 3 6
MN 1691 3 6
MN 1706 3 4
MN 1708 4 6
MN 1760 3 9
MN 1764 3 9
MN 1789 6
MN 1802 71 72
MN 1836 10 6
MN 1837 4 6
MN 1839 3 6
MN 1888 6
MN 1899 3
MN 1940 10 3
MN 2016 4 6
AA-44 3 6
Monroe 3 5
Montgomery 3 98
Nicola 5 9
NJ 31 3 6
NJ 53 10 66
Oriole 6 9
PRI 14-126 4
PRI 14-510 4
PRI 1661-2 3
PRI 855-102 3
Primula 10 4
Raritan 81 95
Regent 10 3
Russian Seedling 12 84
Sawa 10 3
Sciros 5 9
Sharon 10 9
Silken 3 4
Wildung 10 3
Splendour 4 9
State Fair 10 6
NJ 55 3 9
Co-op 29 10 4
Sunrise 4 9
Sweet Sixteen 3 6
Topaz 4 9
Vista Bella 10 9
Wealthy 3 6
Winesap 3
Winter Banana 11 3
Yellow Newtown 11 99
Yellow Transparent 10 6
0407-0001 5
0407-0005 5
0407-0006 4 9
0407-0007 4 9
0407-0008 4 5
0408-0003 3 9
0408-0004 3 9
0408-0005 3 9
0408-0007 3 5
0408-0008 3 9
0408-0010 3 5
0408-0011 3 9
0408-0014 3 9
0408-0015 3 5
0409-0022 3 5
0409-0024 6 9
0409-0028 6 9
0409-0030 6 9
0409-0032 5 6
0409-0035 6 9
0409-0036 6 9
0409-0038 5 6
0409-0039 3 5
0409-0040 6 9
0409-0043 6 9
0409-0045 3 9
0410-0002 11 9
0410-0003 11 9
0410-0005 11 9
0410-0006 3 5
0410-0010 11 9
0410-0011 11 9
0410-0012 3 5
0410-0013 11 9
0410-0015 11 5
0410-0017 3 9
0410-0018 11 5
0414-0010 3 4
0414-0015 3 4
0414-0017 3 4
0414-0018 3 6
0414-0019 4 6
0414-0020 3 6
0414-0021 6
0415-0001 3 6
0415-0004 3 6
0415-0005 3 6
0415-0011 3
0415-0012 3
0415-0013 3
0415-0014 3 5
0415-0016 3 6
0415-0017 3 6
0415-0019 3 6
0415-0020 3 6
0415-0025 3 6
AE_HCxJonf-145 3 6
AE_HCXJonf-148 3
AE_HCxJonf-157 3 6
AE_HCXJonf-162 3 6
AE_HCXJonf-168 3 6
AE_HCxJonf-175 3 6
AE_HCxJonf-183 3 6
AE_HCxJonf-185 3
AE0118-237 10 3
AE0118-238 10 3
AE0118-239 6
AE0118-240 10 3
AE0118-243 3
AE0118-244 3
AE0118-245 10 6
AE0118-246 10 3
AE0118-249 3
AE0206-159 3 6
AE0206-160 3 6
AE0206-161 10 4
AE0206-162 4 6
AE0206-163 10 3
AE0206-164 3 6
AE0206-165 10 3
AE0206-167 10 4
AE0206-168 4 6
AE0206-169 10 3
AE0206-170 10 4
AE0210-146 10 4
AE0210-147 4
AE0210-149 10 9
AE0210-150 10 9
AE0210-151 4 9
AE0210-152 10 4
AE0210-153 4
AE0210-154 10 4
AE0210-157 10 9
AE0210-158 4
AE0210-159 10 9
AE0210-162 4
AE0210-163 4 9
AE0210-164 10 9
AE0210-165 10 4
AE0210-166 10 9
AE0210-168 4
AE0210-169 4
AE0210-170 10 4
AE0210-171 4
AE0210-172 4 9
AE0210-173 10 9
AE0210-174 10 9
AE0213-175 29 3
AE0213-176 3 6
AE0213-177 29 3
AE0213-178 3 6
AE0213-179 29 3
AE0213-180 29 3
AE0213-181 29 3
AE0213-182 29 3
AE0213-183 3 6
AE0213-186 3 6
AE0213-187 29 3
AE0213-190 3 6
AE0213-193 3 6
AE0213-194 3 6
AE0213-195 3 6
AE0213-196 3 6
AE0213-197 3 6
AE0213-198 11 3
AE0213-199 3 6
AE0213-200 29 3
AE0213-201 29 3
AE0213-202 3 6
AE0213-205 29 3
AE0213-206 29 3
AE0251-323 3 6
AE0251-325 4 6
AE0251-327 3 6
AE0251-329 3
AE0251-330 3 6
AE0251-331 3 6
AE0251-342 3 6
AE0251-343 3
AE0406-239 4 6
AE0406-254 3
AE0406-258 3 6
AE0406-259 3 6
AE0406-263 4 6
AE0406-264 3
AE0406-266 4 6
AE0406-271 3 6
AE0406-274 3 4
AE0406-278 3 6
AE0406-281 4 6
AE0406-286 4 6
AE0406-288 3
AE0406-289 3
AE0406-294 3 6
AE0406-298 3
Minneiska 10 3
NJ 303955 9
PRI 612-1 3 4
Arlet 4 5
Co-op 39 83 84
Pinova 3 5
Scired 5 9
Scifresh 29 3
0409-0025 3 9
0409-0026 6 9
0409-0027 3 9
0409-0031 3 9
0409-0033 5 6
0409-0047 5 6
G-14-050 3
G-14-052 3 5
G-14-054 3 5
G-14-055 3 5
G-14-056 3 5
G-14-057 5
G-14-059 3 5
G-14-060 3
G-14-061 3
G-14-062 5
G-14-064 3
G-14-065 3 5
G-14-069 3
G-14-067 5
G-14-068 5
G-14-071 3 5
G-14-073 3
G-14-074 5
G-14-075 3
G-14-076 3
G-14-077 3
G-14-078 5
G-14-080 3 5
G-09-232 29 3
G-09-233 3 9
G-09-234 29 3
G-09-235 29 3
G-09-236 3 9
G-09-237 29 3
G-09-238 3 9
G-09-239 3 9
G-09-240 29 3
G-09-241 29 3
G-09-242 3 9
G-09-243 3 9
G-09-245 29 3
G-09-246 3 9
G-09-258 3 9
G-09-259 3 9
G-09-260 3 9
G-09-261 29 3
G-09-262 3 9
G-09-263 29 3
G-09-264 3 9
G-09-265 29 3
G-09-266 29 3
G-09-267 29 3
G-09-268 3 9
0408-0021 3 9
Wijcik McIntosh 11 99
Beauty of Bath 65 79
Priam 3 4
Northern Spy 10 6
Co-op 15 3 4
MN 1702 3 9
WA 2 5 9
WA 5 3 4
Pitmaston Pineapple 10 5
0411-0011 3 5
0411-0017 3 5
0411-0023 3 5
AE0250-086 4 6
AE0250-087 3 4
AE0250-089 4 6
AE0250-090 3 4
AE0250-092 3 4
AE0250-093 3 6
AE0250-094 3 4
AE0250-095 3
Sonya 3 9
Co-op 38 3 4
AE0250-096 3 6
AE0250-327 3 6
Co-op 30 3
Jonagrimes 3 6
AE0211-036 3 6
G-07-039 3 5
G-07-041 3
BC-8S-27-43 3 4
AE0250-091 4 6
AE0250-097 3 48
AE0250-325 3 48
AE0250-326 3 4
AE0250-329 4 6
AE0250-333 48 6
AE0250-334 3 48
AE0250-335 3 4
AE0250-336 4 6
AE0250-338 48 6
AE0250-341 48 6
AE0211-038 3 4
AE0211-043 11 3
AE0211-045 11 3
AE0211-051 3 4
G-07-010 11 3
G-07-014 11 5
G-07-015 3
G-07-019 3 5
G-07-020 3 5
G-07-024 11 3
G-07-032 11 3
G-07-033 11 3
G-07-034 11 3
G-07-035 3
G-07-044 11 3
AE0211-053 10 3
AE0211-054 3 6
AE0250-088 3 6
AE0250-324 6
AE0250-328 6
AE0250-331 10 6
AE0250-332 3 6
AE0250-337 10 3
AE0250-339 6
Minnewashta 10 6
Autumn Crisp 4 5
G-14-066 3
Lu1-11-010 10 3
Lu1-11-013 3 9
Lu1-11-016 10 9
Lu1-11-017 10 9
Lu1-11-018 3 9
NJ 90 3 4
Lord Lambourne 9
Antonovka GH 6
Grimes Golden 3
Kidds Orange Red 3 5
Malus baccata Hansen #2 6 9
Malus baccata Jackii 100
Summerred 102 4
William's Pride 12 77
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-04-21Apple-RosBREED-3.9K-2019429.6429.92
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Haplotypes
Marker 23456789101112131415161718192021222324252627282930313233343536373839404142434445464748495051525354555657585960616263646566676869707172737475767778798081828384858687888990919293949596979899100101102103104105106107
GDsnp00928-ABBB--BBABAB-B--ABABBBAB--AAABBBABA---B----ABABABAABBABBABAB--BB---ABA--ABAABBBABABBA----BBBBABBBBBBB----
RosBREEDSNP_SNP_AC_14576297_Lg4_01292_MAF10_255965_exon1-AAAAAABAAAAAAAAA------AAAAAAABAAAAAAAAAAAAAAAAAAAA--AAABAAABBA--BAA-AAAAAABA--AAAAABA--AAABABBBAAA--AAB--
RosBREEDSNP_SNP_AG_14487831_Lg4_00928_MAF20_1684844_exon3-AAABBABAABAB--------ABAAAAAAABABA--AA----AB--ABA--ABABAB--AB--AA---ABAA---ABBAABAAABAAAAB--ABAABAAAAA----
RosBREEDSNP_SNP_AG_14559093_Lg4_01292_MAF20_1652080_exon1AAABAAAAAAAAAAAAA--AABA--ABABAAAAAAAA-AAAAAAAAAAAAA--AA--ABAAAAAA--AAAABAAAAA--AABABAABABAAABAAAAAA--AAABA
RosBREEDSNP_SNP_CA_14580745_Lg4_01292_MAF10_1659652_exon1BBBABBBBBBBBBBBBB--BBABBABABABBBBBBBB-BB--BBABABABABBBB--BABBBBBB--BBBBABBBBBBBBBBAABBABABBBABBBBBBBABBBAB
RosBREEDSNP_SNP_CT_14563884_Lg4_01292_MAF30_409786_exon2-BAABBABAABAB-A--BABAABBABAAA--ABA-----BAB--AAABABA--BBABBABBBAAA--BBBB--BABB--BBBAABBAAABABAABBABA--ABB--
RosBREEDSNP_SNP_GT_14389931_Lg4_3118_MAF40_3118_exon1-BBAAABAABA---ABA----AABABAABBAABAABB--A----ABAAAAA--BABA------AB---BBA--BABAAAABABAABAB--BABABBAA-BA-ABAB
RosBREEDSNP_SNP_TC_14566379_Lg4_01292_MAF20_523162_exon1-AAABBABAAAABAAAA----ABAAAAAAABBAB--AABB--ABAAA----ABBAABAAAB--AA---ABAA---BBBABAAA---AAAB--AAAABA-AAAAB--
Alignments
Feature NameTypeLocationAnalysis
Chr04 chromosome Chr04:21657547..21833812. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation