Mdo-HB-04-18

Haplotype Block Overview
Name Mdo-HB-04-18
Species Malus x domestica
Stock Haplotype [view all 426]
Haplotype [view all]
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 3 4
Rome Beauty Law 3 9
Jonafree 17 6
Redfree 17 5
Spartan 6 7
Wagener 3 9
Worcester Pearmain 3 6
Tsugaru 3 4
Golden Delicious 3
Fuji 3
Empire 3 7
Gala 3 4
Honeycrisp 3 5
Elstar 3 6
Marshall McIntosh 3 6
Cripps Pink 3
Granny Smith 3
Jonathan 17 4
Ralls Janet 3 8
Delicious 3 7
Prima 3
Fiesta 3 4
Ingrid Marie 3 6
Idared 4 9
Esopus Spitzenburg 3 4
Braeburn 3 7
Sansa 17 4
Lodi 3 5
James Grieve 24 4
Cripps Red 3 9
Burgundy 4 9
Akane 17 6
Ambrosia 3 7
Aurora Golden Gala 3 4
Beacon 3 5
Ben Davis 3 5 7
Cameo 3
Chinook 3
Clivia 4 7
Co-op 17 7 9
Co-op 18 17 6
Dayton 3 6
Delblush 3
Delorgue 17 3
Dolgo 33 5
Geheimrat Dr. Oldenburg 6 7
Duchess of Oldenburg 4 5
Early Cortland 3 5
Empress 17 6
F2 26829-2-2 3 9
Fantazja 3
Fireside 3 4
Fortune 3
Frostbite 3 6
Ginger Gold 3
GMAL 4327 3 9
GMAL 4328 24 9
GMAL 4329 3
GMAL 4332 3 9
Goodland 4 9
Haralson 3 5
Honeygold 3
Hudson 6 7
Jersey Black 3 8
Jonamac 17 3
Keepsake 3 6
Kerr 3 5
Lady Williams 3 9
Liberty 3 5
Linda 3 4
Longfield 3 5
Macoun 3
Malinda 3
Mantet 3
Melba 6
Melrose 17 7
MN 1627 3 5
MN 1628 3 6
MN 1691 3 9
MN 1706 3
MN 1708 3 6
MN 1760 3
MN 1764 3
MN 1789 5 9
MN 1802 3 6
MN 1836 3 6
MN 1837 3 9
MN 1839 3
MN 1888 5 9
MN 1899 3 6
MN 1940 17 5
MN 2016 3 9
AA-44 3 9
Monroe 4 9
Montgomery 3 9
Nicola 3 4
NJ 31 6
NJ 53 3 6
Oriole 5 6
PRI 14-126 3
PRI 14-510 3
PRI 16-144 3
PRI 1661-2 3 7
PRI 54-12 3 5
PRI 855-102 17
Primula 3 6
Raritan 6
Regent 3
Russian Seedling 3
Sawa 3 6
Sciros 3 4
Sharon 6
Silken 3
Wildung 3 6
Splendour 3
State Fair 3 5
NJ 55 3 5
Co-op 29 3
Sunrise 3 6
Sweet Sixteen 3 6
Topaz 24
Vista Bella 17 6
Wealthy 4 5
Winesap 3 7
Winter Banana 3
Yellow Newtown 3
Yellow Transparent 3 5
0407-0001 4
0407-0005 4
0407-0006 3 4
0407-0007 3
0407-0008 3 4
0408-0003 3 7
0408-0004 3 7
0408-0005 3 7
0408-0007 17 3
0408-0008 3 7
0408-0010 4 7
0408-0011 3 7
0408-0014 3 7
0408-0015 17 4
0409-0022 3 4
0409-0024 3 5
0409-0028 3 5
0409-0030 3 5
0409-0032 4 5
0409-0035 3 5
0409-0036 3 5
0409-0038 4 5
0409-0039 3 4
0409-0040 3 5
0409-0043 5
0409-0045 3
0410-0002 3
0410-0003 3
0410-0005 3
0410-0006 3 4
0410-0010 3
0410-0011 3
0410-0012 3 4
0410-0013 3
0410-0015 3 4
0410-0017 3
0410-0018 3 4
0414-0010 3
0414-0015 3
0414-0017 3
0414-0018 17 5
0414-0019 3 5
0414-0020 17 5
0414-0021 3 5
0415-0001 5 7
0415-0004 5 7
0415-0005 5 7
0415-0011 3 7
0415-0012 17 3
0415-0013 17 3
0415-0014 3 4
0415-0016 17 5
0415-0017 17 5
0415-0019 17 5
0415-0020 5 7
0415-0025 5 7
AE_HCxJonf-145 17 5
AE_HCXJonf-148 17 3
AE_HCxJonf-157 3 6
AE_HCXJonf-162 17 5
AE_HCXJonf-168 3 5
AE_HCxJonf-175 3 6
AE_HCxJonf-183 5 6
AE_HCxJonf-185 17 3
AE0118-237 3
AE0118-238 3
AE0118-239 3 5
AE0118-240 3 5
AE0118-243 3
AE0118-244 3
AE0118-245 3 5
AE0118-246 3
AE0118-249 3
AE0206-159 4 9
AE0206-160 4 9
AE0206-161 3 5
AE0206-162 3 9
AE0206-163 4 5
AE0206-164 4 9
AE0206-165 4 9
AE0206-167 4 5
AE0206-168 3 9
AE0206-169 4 5
AE0206-170 4 5
AE0210-146 3
AE0210-147 3
AE0210-149 3 6
AE0210-150 3 6
AE0210-151 3 6
AE0210-152 6 9
AE0210-153 3
AE0210-154 3
AE0210-157 3 6
AE0210-158 3
AE0210-159 3 6
AE0210-162 3
AE0210-163 3 6
AE0210-164 3
AE0210-165 3
AE0210-166 3 6
AE0210-168 3
AE0210-169 3
AE0210-170 3
AE0210-171 3
AE0210-172 3 6
AE0210-173 3 6
AE0210-174 3 6
AE0213-175 3
AE0213-176 3 9
AE0213-177 3 9
AE0213-178 3
AE0213-179 3 9
AE0213-180 3
AE0213-181 3 9
AE0213-182 3
AE0213-183 3 9
AE0213-186 3 9
AE0213-187 3
AE0213-190 3 9
AE0213-193 3 9
AE0213-194 3 9
AE0213-195 3 9
AE0213-196 3 9
AE0213-197 3 9
AE0213-198 24 3
AE0213-199 3 9
AE0213-200 3
AE0213-201 3
AE0213-202 3 9
AE0213-205 3
AE0213-206 3
AE0251-323 4 6
AE0251-325 3 6
AE0251-327 4 6
AE0251-329 3 4
AE0251-330 4 6
AE0251-331 4 6
AE0251-342 4 6
AE0251-343 3 4
AE0406-239 3 5
AE0406-254 3
AE0406-259 3 5
AE0406-263 3 5
AE0406-264 3
AE0406-266 3 5
AE0406-271 3 5
AE0406-274 3
AE0406-278 3 5
AE0406-281 3 5
AE0406-286 3 5
AE0406-288 3
AE0406-289 3
AE0406-294 3 5
AE0406-298 3
Minneiska 3 5
NJ 303955 5
PRI 612-1 3 7
Arlet 3 4
Co-op 39 18 5
Pinova 3 4
Scired 3 4
Scifresh 3 7
0409-0025 3
0409-0026 3 5
0409-0027 3
0409-0031 3
0409-0033 4 5
0409-0047 4 5
G-14-050 3
G-14-052 3 4
G-14-054 3
G-14-055 3
G-14-056 3 4
G-14-057 4
G-14-059 3 4
G-14-060 3
G-14-061 3
G-14-062 4
G-14-064 3
G-14-065 3 4
G-14-069 3
G-14-067 3 4
G-14-068 4
G-14-071 3 4
G-14-073 3
G-14-074 3 4
G-14-075 3 4
G-14-076 3
G-14-077 3
G-14-078 4
G-14-080 3 4
G-09-232 3 7
G-09-233 3
G-09-234 3 7
G-09-235 3 7
G-09-236 3
G-09-237 3 7
G-09-238 3
G-09-239 3
G-09-240 3 7
G-09-241 3 7
G-09-242 3
G-09-243 3
G-09-245 3 7
G-09-246 3
G-09-258 3
G-09-259 3
G-09-260 3
G-09-261 3 7
G-09-262 3
G-09-263 3 7
G-09-264 3
G-09-265 3 7
G-09-266 3 7
G-09-267 3 7
G-09-268 3
0408-0021 17 3
Wijcik McIntosh 17 5
Priam 17 3
Northern Spy 3 6
Co-op 15 7 9
MN 1702 4 6
WA 2 3 4
WA 5 3 9
Pitmaston Pineapple 3 4
0411-0011 17 4
0411-0017 4 7
0411-0023 4 7
AE0250-086 3 6
AE0250-087 3
AE0250-089 3 6
AE0250-090 3
AE0250-092 3
AE0250-093 4 6
AE0250-094 3
AE0250-095 3 4
Sonya 3
Co-op 38 3 9
AE0250-096 3 9
AE0250-327 3 9
Co-op 30 17 7
Jonagrimes 3 5
AE0211-036 3 9
G-07-039 4 7
PRI 14-152 3
G-07-041 17 3
BC-8S-27-43 3 4
AE0250-091 5 9
AE0250-097 3
AE0250-325 3
AE0250-326 3 9
AE0250-329 5 9
AE0250-333 3 5
AE0250-334 3
AE0250-335 3 9
AE0250-336 5 9
AE0250-338 3 5
AE0250-341 3 5
AE0211-038 3 9
AE0211-043 24 3
AE0211-045 24 3
AE0211-051 3 9
G-07-010 17 3
G-07-014 3 4
G-07-015 17 3
G-07-019 3 4
G-07-020 3 4
G-07-024 17 3
G-07-032 17 3
G-07-033 17 3
G-07-034 17 3
G-07-035 17 3
G-07-044 3 4
AE0211-053 3 5
AE0211-054 3 9
AE0250-088 3 9
AE0250-324 5 9
AE0250-328 5 9
AE0250-331 5
AE0250-332 3 9
AE0250-337 3 5
AE0250-339 5 9
Minnewashta 5 9
Autumn Crisp 3 4
G-14-066 3
Lu1-11-010 3 6
Lu1-11-013 3 5
Lu1-11-016 3 6
Lu1-11-017 3 6
Lu1-11-018 3 5
NJ 90 3 7
Lord Lambourne 24 6
Antonovka GH 5 9
Grimes Golden 3
Kidds Orange Red 4 7
Malus baccata Hansen #2 5 9
Malus baccata Jackii 3
Summerred 3 54
William's Pride 6 9
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-04-18Apple-RosBREED-3.9K-2019426.426.4
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Haplotypes
Marker 2345678910111213141516171819202122232425262728293031323334353637383940414243444546474849505152535455565758
RosBREEDSNP_SNP_AC_13312189_Lg4_RosCOS3641_MAF20_110683_exon1AABAAAAAA--AAABAB--A-AAAAAAA-ABAA--AAA--ABABAAA--BAABBAAA
RosBREEDSNP_SNP_AG_13320540_Lg4_RosCOS3641_MAF10_MDP0000261037_exon2-AAAAB-AA--AABAAAAAAAAAAAA--ABAAA----AABAAAAA--AAAA----AA
RosBREEDSNP_SNP_AG_13341945_Lg4_RosCOS3641_MAF40_1621447_exon6-ABAAB-AA--AABBAB--A-AB--A---------AB---A--BAAAAAABABBAAA
RosBREEDSNP_SNP_CA_13299432_Lg4_RosCOS3641_MAF20_MDP0000794353_exon1-BBBBB-A---BABBBB----BB--B--BBB--ABBB-BB--BBAABBBBBBB--BA
RosBREEDSNP_SNP_CT_13348603_Lg4_RosCOS3641_MAF50_MDP0000768370_exon1BBAAAAAA-AB----BB-----BAB-BA-AABA--AA---B-B-ABABABABAABAB
RosBREEDSNP_SNP_TC_13306908_Lg4_RosCOS3641_MAF10_1672503_exon1-AAABA-AA--AAAABAABB--AAABABAAA----BA-BAA---BAAAAAAAA---A
Alignments
Feature NameTypeLocationAnalysis
Chr04 chromosome Chr04:20513317..20571661. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation