Mdo-HB-04-10

Haplotype Block Overview
Name Mdo-HB-04-10
Species Malus x domestica
Stock Haplotype [view all 427]
Haplotype [view all]
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 24 25
Rome Beauty Law 18 5
Jonafree 4 9
Redfree 77 86
Spartan 4 9
Wagener 26 9
Worcester Pearmain 25 5
Tsugaru 25 5
Golden Delicious 4 5
Fuji 12 4
Empire 5 9
Gala 5 9
Honeycrisp 5 6
Elstar 26 4
Marshall McIntosh 4 5
Cripps Pink 4 9
Granny Smith 5 9
Jonathan 25 4
Ralls Janet 12
Delicious 4 9
Discovery 5 95
Prima 26 6
821 15
Fiesta 24 25
Ingrid Marie 24 26
Idared 25 9
Esopus Spitzenburg 24 25
Braeburn 25 4
Sansa 4 9
Lodi 5 6
James Grieve 25 9
Cripps Red 5
Burgundy 25 6
Akane 25 4
Ambrosia 5 9
Aurora Golden Gala 5
Beacon 18 6
Ben Davis 5 6 9
Cameo 4 5
Chinook 4 5
Clivia 25 9
Co-op 17 18 9
Co-op 18 22 28
Dayton 25 26 4 53
Delblush 5
Delorgue 4 6
Dolgo 15 63
Geheimrat Dr. Oldenburg 6 9
Duchess of Oldenburg 6
Early Cortland 4 5 9
Empress 4
F2 26829-2-2 18 6
Fantazja 25 5
Fireside 25 5
Fortune 24 5
Frostbite 5 6
Ginger Gold 4 5
GMAL 4327 54 9
GMAL 4328 47 48
GMAL 4329 24 43
GMAL 4332 4 43
Goodland 6
Haralson 18 6
Honeygold 18 5
Hudson 5 9
Jersey Black 6
Jonamac 4 5
Keepsake 5 9
Kerr 15 18
Lady Williams 5 9
Liberty 5 6
Linda 25 6
Longfield 24 88
Macoun 5 6
Malinda 18 39
Mantet 25
Melba 26 4
Melrose 4 9
MN 1627 5 6
MN 1628 5 9
MN 1691 25 6
MN 1706 4 71
MN 1708 5 9
MN 1760 5
MN 1764 5
MN 1789 6
MN 1802 6 9
MN 1836 25 9
MN 1837 5 6
MN 1839 5 6
MN 1888 6
MN 1899 18 6
MN 1940 4 6
MN 2016 5 6
AA-44 25 6
Monroe 25 5
Montgomery 32 5
Nicola 4 9
NJ 31 9
NJ 53 6
Oriole 26 6
PRI 14-126 5 6
PRI 14-510 5 6
PRI 1661-2 5 9
PRI 54-12 6
PRI 855-102 4
Primula 4 6
Raritan 53 85
Regent 18 5
Russian Seedling 14 87
Sawa 25 4
Sciros 4 9
Sharon 4 9
Silken 18 5
Wildung 4 5
Splendour 4 5
State Fair 25 6
NJ 55 4 9
Co-op 29 4 6
Sunrise 25 5
Sweet Sixteen 5 9
Topaz 25 5
Vista Bella 4 6
Wealthy 25 6
Winesap 10 9
Winter Banana 48 53
Yellow Newtown 88 89
Yellow Transparent 24 6
0407-0001 25 5
0407-0005 25 5
0407-0006 5
0407-0007 5
0407-0008 5
0408-0003 5 9
0408-0004 4 5
0408-0005 5 9
0408-0007 4 5
0408-0008 5 9
0408-0010 5 9
0408-0011 5 9
0408-0014 5 9
0408-0015 4 5
0409-0022 5
0409-0024 5 6
0409-0028 5 6
0409-0030 5 6
0409-0032 5 6
0409-0035 5 6
0409-0036 5 6
0409-0038 5 6
0409-0039 5
0409-0040 5 6
0409-0043 5 6
0409-0045 5 6
0410-0002 5 9
0410-0003 5 9
0410-0005 5 9
0410-0006 5 9
0410-0010 5 9
0410-0011 5 9
0410-0012 5 9
0410-0013 5 9
0410-0015 5 9
0410-0017 5
0410-0018 5 9
0414-0010 5
0414-0015 5
0414-0017 5 6
0414-0018 4 6
0414-0019 5 6
0414-0020 4 5
0414-0021 5 6
0415-0001 6 9
0415-0004 6 9
0415-0005 6 9
0415-0011 5 9
0415-0012 5 9
0415-0013 4 5
0415-0014 25 5
0415-0016 4 5
0415-0017 4 5
0415-0019 4 6
0415-0020 6 9
0415-0025 4 6
AE_HCxJonf-145 4 6
AE_HCXJonf-148 4 5
AE_HCxJonf-157 5 9
AE_HCXJonf-162 4 6
AE_HCXJonf-168 4 6
AE_HCxJonf-175 5 9
AE_HCxJonf-183 6 9
AE_HCxJonf-185 4 5
AE0118-237 18 5
AE0118-238 5
AE0118-239 5 6
AE0118-240 5 6
AE0118-243 18 5
AE0118-244 18 6
AE0118-245 5 6
AE0118-246 5
AE0118-249 18 5
AE0206-159 6 9
AE0206-160 6 9
AE0206-161 5 6
AE0206-162 5 6
AE0206-163 6 9
AE0206-164 6 9
AE0206-165 6 9
AE0206-167 6 9
AE0206-168 5 6
AE0206-169 6 9
AE0206-170 6 9
AE0210-146 24 25
AE0210-147 24 5
AE0210-149 24 25
AE0210-150 24 25
AE0210-151 25 43
AE0210-152 25 6
AE0210-153 43 5
AE0210-154 24 5
AE0210-157 24 25
AE0210-158 43 5
AE0210-159 24 25
AE0210-162 43 5
AE0210-163 25 43
AE0210-164 43 5
AE0210-165 24 5
AE0210-166 24 5
AE0210-168 24 5
AE0210-169 24 5
AE0210-170 24 5
AE0210-171 43 5
AE0210-172 25 43
AE0210-174 24 25
AE0213-175 43 5
AE0213-176 4 5
AE0213-177 4 5
AE0213-178 43 5
AE0213-179 4 5
AE0213-180 4 5
AE0213-181 4 5
AE0213-182 43 5
AE0213-183 4
AE0213-186 4 5
AE0213-190 4 5
AE0213-193 4 5
AE0213-194 4 5
AE0213-195 4 5
AE0213-196 43 5
AE0213-197 4 5
AE0213-198 5
AE0213-199 4 5
AE0213-200 43 5
AE0213-201 4
AE0213-202 4 5
AE0213-205 43 5
AE0213-206 4 5
AE0251-323 5 9
AE0251-325 5 9
AE0251-327 9
AE0251-329 5 9
AE0251-330 9
AE0251-331 9
AE0251-342 9
AE0251-343 5 9
AE0406-239 5 6
AE0406-254 18 5
AE0406-258 18 6
AE0406-259 18 6
AE0406-263 5 6
AE0406-264 18 5
AE0406-266 5 6
AE0406-271 5 6
AE0406-274 5
AE0406-278 5 6
AE0406-281 18 5
AE0406-286 5 6
AE0406-288 18 5
AE0406-289 18 5
AE0406-294 18 6
AE0406-298 18 5
Minneiska 6
NJ 303955 9
PRI 612-1 6 9
Arlet 25 5
Co-op 39 77 78
Pinova 25 4
Scired 4 9
Scifresh 25 5
0409-0025 5
0409-0026 5 6
0409-0027 5
0409-0031 5 6
0409-0033 5 6
0409-0047 5 6
G-14-050 12 4
G-14-052 25 4
G-14-054 12 4
G-14-055 12 4
G-14-056 25 4
G-14-057 25 4
G-14-059 25 4
G-14-060 25 4
G-14-061 12 4
G-14-062 25
G-14-064 25 4
G-14-065 12 25
G-14-069 25 4
G-14-067 25 4
G-14-068 25 4
G-14-071 25
G-14-073 12 4
G-14-074 12 25
G-14-075 25 4
G-14-076 12 4
G-14-077 12 4
G-14-078 12 25
G-14-080 12 25
G-09-232 25 4
G-09-233 4 5
G-09-234 25 5
G-09-235 25 4
G-09-236 25 4
G-09-237 25 5
G-09-238 4
G-09-239 4 5
G-09-240 25 5
G-09-241 25 5
G-09-242 4
G-09-243 4
G-09-245 25 5
G-09-246 25 5
G-09-258 4
G-09-259 4 5
G-09-260 4
G-09-261 25 5
G-09-262 25 4
G-09-263 25 4
G-09-264 4 5
G-09-265 25 4
G-09-266 25 4
G-09-267 25 4
G-09-268 25 4
0408-0021 4 5
Wijcik McIntosh 4 5
Beauty of Bath 95
Priam 4 6
Northern Spy 5 9
Co-op 15 4 9
MN 1702 25 6
WA 2 4 9
WA 5 4 5
Pitmaston Pineapple 24 25
0411-0011 25 4
0411-0017 25 9
0411-0023 25 9
AE0250-086 5 9
AE0250-087 5
AE0250-089 5 9
AE0250-090 5
AE0250-092 5
AE0250-093 5 9
AE0250-094 5
AE0250-095 5 9
Sonya 4 5
Co-op 38 18 5
AE0250-096 4 6
AE0250-327 4 6
Co-op 30 4 9
Jonagrimes 4 6
AE0211-036 4 5
G-07-039 9
PRI 14-152 5 6
PRI 47-176 18 25
G-07-041 12 4
BC-8S-27-43 5 9
AE0250-091 5 9
AE0250-097 5 54
AE0250-325 5 54
AE0250-326 5 9
AE0250-329 6 9
AE0250-333 54 6
AE0250-334 5 54
AE0250-335 5 9
AE0250-336 6 9
AE0250-338 6 9
AE0250-341 54 6
AE0211-038 48 5
AE0211-043 4 47
AE0211-051 48 5
G-07-010 4 9
G-07-014 9
G-07-015 4 5
G-07-019 5 9
G-07-020 4 5
G-07-024 4 9
G-07-032 4 5
G-07-033 4 9
G-07-034 4 9
G-07-035 4 5
G-07-044 9
AE0211-053 5 6
AE0211-054 4 6
AE0250-088 6
AE0250-324 6
AE0250-328 6
AE0250-331 6
AE0250-332 5 6
AE0250-337 6
AE0250-339 6
Minnewashta 6
Autumn Crisp 25 5
G-14-066 12 4
Lu1-11-010 12 4
Lu1-11-013 12 9
Lu1-11-016 4
Lu1-11-017 12 4
Lu1-11-018 12 9
NJ 90 6 9
Lord Lambourne 25
Antonovka GH 6
Grimes Golden 3 4
Kidds Orange Red 25 9
Malus baccata Hansen #2 6 9
Malus baccata Jackii 90
Summerred 5 91
William's Pride 18 25
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-04-10Apple-RosBREED-3.9K-2019417.6618.5
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Haplotypes
Marker 234567891011121314151617181920212223242526272829303132333435363738394041424344454647484950515253545556575859606162636465666768697071727374757677787980818283848586878889909192939495
RosBREEDSNP_SNP_AG_4635144_Lg4_00705_MAF50_MDP0000302476_exon2BABAB--BBBBnullAnull--nullBB---BABB-BBAnull-----ABnullBABABABA---ABA----BBABBnullABB-B-A-nullBBnullABBA-BBAABABAnullABABB
RosBREEDSNP_SNP_AG_4838321_Lg4_snpCO576145_MAF20_1639247_exon4AAAABBAABAABAABABABBABBABBAABAA---ABAABBAAAAABABBAAABABBAAA--AA--AAAABABAABAA--ABABABAABAA--BB
RosBREEDSNP_SNP_GA_4826865_Lg4_snpCO576145_MAF40_1650910_exon1--BBAABBABAABBABA--ABAABB-BBABA---BABBAABB---BBBBBBBB----B-------BB-BABAAAABBBBBAAABBBABBB--BB
RosBREEDSNP_SNP_GA_4844832_Lg4_snpCO576145_MAF30_MDP0000127501_exon10BBBBBBBABABBBBBBBABBBBBBBBA---BBBABBBBBBBABABBABBAABBBB--BA--BB--ABBABB--A-BBBBBBBBBBABBB-ABBB
RosBREEDSNP_SNP_GT_4625426_Lg4_00705_MAF50_1676956_exon1BABAB--BBBBAA---ABBBBABABBBBBAA-ABAB-----AAAAABA-AAAAAABABB----AB-AB-A-ABBABABABABBBAABAAABABB
RosBREEDSNP_SNP_TC_4849635_Lg4_snpCO576145_MAF30_94178_exon1--AAAAAA--B--A--AAAAAABBA-AAAAA---ABAAAABAAABAAAAAAAAAA----AAAA--ABA-ABAAABAB---A-ABB-ABAB---B
Alignments
Feature NameTypeLocationAnalysis
Chr04 chromosome Chr04:8437686..8697108. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation