Mdo-HB-03-48

Haplotype Block Overview
Name Mdo-HB-03-48
Species Malus x domestica
Stock Haplotype [view all 430]
Haplotype [view all]
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 4 6
Rome Beauty Law 3 5
Jonafree 4
Redfree 24 8
Spartan 3 8
Wagener 3 6
Worcester Pearmain 3
Tsugaru 3 4
Golden Delicious 3 4
Fuji 3
Empire 3 8
Gala 3
Honeycrisp 4 6
Elstar 3
Marshall McIntosh 3 8
Cripps Pink 3 6
Granny Smith 3 6
Jonathan 3 4
Ralls Janet 3 7
Delicious 3
Discovery 3
Prima 3
821 5
Fiesta 4 6
Ingrid Marie 3 4
Idared 3 4
Esopus Spitzenburg 3 4
Braeburn 3 4
Sansa 3
Lodi 3
James Grieve 3 4
Cripps Red 3 6
Burgundy 3
Akane 3
Ambrosia 3
Aurora Golden Gala 3
Beacon 18 8
Ben Davis 3 5
Cameo 3 4
Chinook 3
Clivia 4
Co-op 17 3 4
Co-op 18 4
Dayton 3 4 5
Delblush 3 4
Delorgue 3 4
Dolgo 17 3
Geheimrat Dr. Oldenburg 3 4
Duchess of Oldenburg 4 5
Early Cortland 3 5
Empress 4 6
F2 26829-2-2 5
Fantazja 3 4
Fireside 5
Fortune 3 4
Frostbite 5 6
Ginger Gold 3 4
GMAL 4327 3 6
GMAL 4328 6 8
GMAL 4329 3
GMAL 4332 3
Goodland 3 4
Haralson 3 4
Honeygold 3 4
Hudson 3
Jersey Black 17 5
Jonamac 3 4
Keepsake 4 6
Kerr 3
Lady Williams 4 6
Liberty 4 5
Linda 4
Liveland Raspberry 3 6
Longfield 25 3
Macoun 5 8
Malinda 3 6
Melba 3 6
Melrose 3 4
MN 1627 4 5
MN 1628 4 6
MN 1691 3 5
MN 1706 18 8
MN 1708 4
MN 1760 4 5
MN 1764 4
MN 1789 4 5
MN 1802 4 5
MN 1836 4 6
MN 1837 4 5
MN 1839 5
MN 1888 4 5
MN 1899 4 6
MN 1940 5 6
MN 2016 3 5
AA-44 3 5
Monroe 3
Montgomery 3
Nicola 3
NJ 31 4
NJ 53 3 6
Oriole 3 5
PRI 14-126 4 5
PRI 14-510 3 5
PRI 1661-2 3 8
PRI 54-12 4 5
PRI 855-102 4
Primula 3 6
Raritan 24 8
Regent 4 8
Russian Seedling 3
Sawa 3 6
Sciros 3
Sharon 5 8
Silken 3
Wildung 5
Splendour 3
State Fair 3 4
NJ 55 3 6
Co-op 29 4 8
Sunrise 3 6
Sweet Sixteen 3 6
Topaz 3 4
Vista Bella 3 6
Wealthy 4 5
Winesap 3 6
Winter Banana 4 6
Yellow Newtown 3
Yellow Transparent 3 6
0407-0001 3 4
0407-0005 3 4
0407-0006 3 4
0407-0007 3
0407-0008 3
0408-0003 3
0408-0004 3
0408-0005 3
0408-0007 3
0408-0008 3
0408-0010 3
0408-0011 3
0408-0014 3
0408-0015 3
0409-0022 3 6
0409-0024 3 4
0409-0028 3 4
0409-0030 3 4
0409-0032 3 4
0409-0035 3 6
0409-0036 3 6
0409-0038 3 6
0409-0039 3 4
0409-0040 3 4
0409-0043 3 4
0409-0045 3 6
0410-0002 3
0410-0003 3
0410-0005 3 6
0410-0006 3 6
0410-0010 3
0410-0011 3 6
0410-0012 3 6
0410-0013 3 6
0410-0015 3
0410-0017 3
0410-0018 3
0414-0010 3 4
0414-0015 3 4
0414-0017 3 6
0414-0018 3 4
0414-0019 4 6
0414-0020 3 6
0414-0021 4 6
0415-0001 3 4
0415-0004 3 6
0415-0005 3 4
0415-0011 3 4
0415-0012 3 4
0415-0013 3 4
0415-0014 4 6
0415-0016 3 4
0415-0017 3 6
0415-0019 3 4
0415-0020 3 4
0415-0025 3 6
AE_HCxJonf-145 4 6
AE_HCXJonf-148 4
AE_HCxJonf-157 4 6
AE_HCXJonf-162 4
AE_HCXJonf-168 4
AE_HCxJonf-175 4
AE_HCxJonf-183 4
AE_HCxJonf-185 4
AE0118-237 6 8
AE0118-238 4
AE0118-239 5 6
AE0118-240 4 8
AE0118-243 4 8
AE0118-244 4 8
AE0118-245 4 8
AE0118-246 4
AE0118-249 4 6
AE0206-159 3 5
AE0206-160 3 5
AE0206-161 3
AE0206-162 3
AE0206-163 3 5
AE0206-164 3 5
AE0206-165 3
AE0206-167 3
AE0206-168 3 5
AE0206-169 3
AE0206-170 3 5
AE0210-146 3 6
AE0210-147 3
AE0210-149 3 6
AE0210-150 3
AE0210-151 3 6
AE0210-152 5 6
AE0210-153 3
AE0210-154 3
AE0210-157 3 6
AE0210-158 3
AE0210-159 3 6
AE0210-162 3 6
AE0210-163 3 6
AE0210-164 3 6
AE0210-165 3
AE0210-166 3 6
AE0210-168 3 6
AE0210-169 3 6
AE0210-170 3
AE0210-171 3
AE0210-172 3 6
AE0210-173 3
AE0210-174 3 6
AE0213-175 3
AE0213-176 3
AE0213-177 3 4
AE0213-178 3 4
AE0213-179 3 4
AE0213-180 3 4
AE0213-181 3 4
AE0213-182 3
AE0213-183 3
AE0213-186 3
AE0213-187 3 4
AE0213-190 3
AE0213-193 3
AE0213-194 3
AE0213-195 3 4
AE0213-196 3 4
AE0213-197 3 4
AE0213-198 4 5
AE0213-199 3 4
AE0213-200 3 4
AE0213-201 3 4
AE0213-202 3 4
AE0213-205 3 4
AE0213-206 3 4
AE0251-323 3
AE0251-325 3 6
AE0251-327 3
AE0251-329 3 6
AE0251-330 3
AE0251-331 3
AE0251-342 3 6
AE0251-343 3 6
AE0406-239 3 6
AE0406-254 3 4
AE0406-258 3 4
AE0406-259 3 4
AE0406-263 3 4
AE0406-264 3 6
AE0406-266 3 4
AE0406-271 4 6
AE0406-274 3 4
AE0406-278 3 6
AE0406-281 3 4
AE0406-286 3 6
AE0406-288 3 4
AE0406-289 3 4
AE0406-294 3 4
AE0406-298 3 4
Minneiska 4 5
NJ 303955 6
PRI 612-1 3 5
Arlet 3 4
Co-op 39 23 3
Pinova 3 4
Scired 3
Scifresh 3 4
0409-0025 3 6
0409-0026 3 4
0409-0027 3 6
0409-0031 3 6
0409-0033 3 6
0409-0047 3 4
G-14-050 4
G-14-052 3
G-14-054 3
G-14-055 3
G-14-056 3
G-14-057 3 4
G-14-059 3
G-14-060 3 4
G-14-061 3
G-14-062 4
G-14-064 3
G-14-065 3
G-14-069 3
G-14-067 4
G-14-068 3
G-14-071 3
G-14-073 3
G-14-074 3 4
G-14-075 4
G-14-076 3 4
G-14-077 3 4
G-14-078 3 4
G-14-080 4
G-09-232 4
G-09-233 4
G-09-234 4
G-09-235 3 4
G-09-236 3
G-09-237 3 4
G-09-238 3 4
G-09-239 3 4
G-09-240 3
G-09-241 3 4
G-09-242 4
G-09-243 3 4
G-09-245 3 4
G-09-246 3 4
G-09-258 3 4
G-09-259 3 4
G-09-260 3 4
G-09-261 3
G-09-262 3
G-09-263 3 4
G-09-264 3 4
G-09-265 3
G-09-266 3 4
G-09-267 3
G-09-268 3 4
0408-0021 3
Wijcik McIntosh 3 8
Beauty of Bath 3
Priam 3 4
Northern Spy 3 4
Co-op 15 3 6
MN 1702 5 6
WA 2 3
WA 5 3 6
Pitmaston Pineapple 3
0411-0011 3 4
0411-0017 3
0411-0023 3
AE0250-086 3
AE0250-087 3 6
AE0250-089 3
AE0250-090 3 6
AE0250-092 3 6
AE0250-093 3 6
AE0250-094 3
AE0250-095 3 6
Sonya 3 4
Co-op 38 3
AE0250-096 5
AE0250-327 3 5
Co-op 30 3
Jonagrimes 3 4
AE0211-036 3
G-07-039 3 8
PRI 14-152 4 5
PRI 47-176 3 5
G-07-041 3
BC-8S-27-43 3
AE0250-091 3 4
AE0250-097 3 6
AE0250-325 3 6
AE0250-326 3 6
AE0250-329 4 6
AE0250-333 3 4
AE0250-334 4 6
AE0250-335 4 6
AE0250-336 4 6
AE0250-338 6
AE0250-341 6
AE0211-038 4 8
AE0211-043 4 6
AE0211-045 4 8
AE0211-051 3 8
G-07-010 3
G-07-014 3
G-07-015 3
G-07-019 3 6
G-07-020 3
G-07-024 3
G-07-032 3
G-07-033 3 6
G-07-034 3
G-07-035 3
G-07-044 3 6
AE0211-053 3
AE0211-054 3 5
AE0250-088 4 5
AE0250-324 3 6
AE0250-328 4 5
AE0250-331 3 4
AE0250-332 3 4
AE0250-337 3 6
AE0250-339 3 6
Minnewashta 3 5
Autumn Crisp 3 4
G-14-066 3 4
Lu1-11-010 3
Lu1-11-013 3
Lu1-11-016 3
Lu1-11-017 3
Lu1-11-018 3
NJ 90 3
Lord Lambourne 3 4
Antonovka GH 3
Grimes Golden 3
Kidds Orange Red 3 4
Malus baccata Hansen #2 3
Malus baccata Jackii 3
Summerred 3 8
William's Pride 3 6
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-03-48Apple-RosBREED-3.9K-2019365.865.83
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Haplotypes
Marker 2345678910111213141516171819202122232425
GDsnp00664BBABBAB--BB----BA-BA-AAB
RosBREEDSNP_SNP_AG_37110581_Lg3_00664_MAF50_497449_exon2AABABBBABA----BBB---ABAB
RosBREEDSNP_SNP_GT_37144010_Lg3_00664_MAF30_MDP0000319123_exon2BBBBABBBBA-BBBAAAAABBBBA
RosBREEDSNP_SNP_TC_37079043_Lg3_00664_MAF10_363370_exon1-AABA-AAAAAAB-A-A-AABBAB
Alignments
Feature NameTypeLocationAnalysis
Chr03 chromosome Chr03:35360176..35434489. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation