Mdo-HB-03-39

Haplotype Block Overview
Name Mdo-HB-03-39
Species Malus x domestica
Stock Haplotype [view all 427]
Haplotype [view all]
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 7 8
Rome Beauty Law 5
Jonafree 7 8
Redfree 4 7
Spartan 5 7
Wagener 7 8
Worcester Pearmain 5 7
Tsugaru 5 7
Golden Delicious 4 5
Fuji 5
Empire 5 7
Gala 4 5
Honeycrisp 5
Elstar 4 5
Marshall McIntosh 5 7
Cripps Pink 4 6
Granny Smith 6 8
Jonathan 7 8
Ralls Janet 5
Delicious 5
Discovery 11 7
Prima 4 5
821 6 7
Fiesta 7
Ingrid Marie 5 8
Idared 7 8
Esopus Spitzenburg 5 8
Braeburn 5 8
Sansa 4 7
Lodi 7
James Grieve 5 8
Cripps Red 5 6
Burgundy 5 6
Akane 5 7
Ambrosia 4 5
Aurora Golden Gala 4
Beacon 6 7
Ben Davis 4 5
Cameo 5
Clivia 5 7
Co-op 17 5 8
Co-op 18 7 8
Dayton 4 5 7
Delblush 4 5
Delcorf 20 6
Delorgue 6 7
Dolgo 6
Geheimrat Dr. Oldenburg 5 8
Duchess of Oldenburg 6 7
Early Cortland 5 7
Empress 13 7
F2 26829-2-2 5 6
Fantazja 5 8
Fireside 7
Fortune 5 8
Frostbite 4 5
Ginger Gold 5 7
GMAL 4327 6 7
GMAL 4328 6 7
GMAL 4329 6
GMAL 4332 6 7
Goodland 5 6
Haralson 7 8
Honeygold 4 8
Hudson 4 7
Jersey Black 5
Jonamac 5 7
Keepsake 5 7
Kerr 6 8
Lady Williams 6 7
Liberty 5 8
Linda 7 8
Liveland Raspberry 5 7
Longfield 5 7
Macoun 5 7
Malinda 7
Melba 5 7
Melrose 5 8
MN 1627 5 7
MN 1691 5 7
MN 1706 5
MN 1708 5 7
MN 1760 4 7
MN 1764 4 7
MN 1789 5 7
MN 1802 4 5
MN 1836 5 8
MN 1837 5 7
MN 1839 7
MN 1888 5 7
MN 1899 4 8
MN 1940 7
MN 2016 4 7
AA-44 6 7
Monroe 5 7
Montgomery 7
Nicola 4 5
NJ 31 5 7
NJ 53 13 5
Oriole 5 8
PRI 14-126 5 6
PRI 14-510 4 5
PRI 1661-2 5 7
PRI 54-12 6 8
PRI 855-102 8
Primula 7 8
Raritan 11 22
Regent 7 8
Russian Seedling 6
Sawa 7 8
Sciros 4
Sharon 7
Silken 4 5
Wildung 7
Splendour 4 5
State Fair 17 8
NJ 55 5 7
Co-op 29 5 7
Sunrise 13 5
Sweet Sixteen 4 5
Topaz 5
Vista Bella 13
Wealthy 7 8
Winesap 5
Winter Banana 5 7
Yellow Newtown 7 8
Yellow Transparent 13 7
0407-0001 4 7
0407-0005 4 7
0407-0006 4 7
0407-0007 4
0407-0008 4
0408-0003 4 5
0408-0004 4 5
0408-0005 4 5
0408-0007 4 5
0408-0008 4 5
0408-0010 4 5
0408-0011 4 5
0408-0014 4 5
0408-0015 4 5
0409-0022 4 5
0409-0024 4 5
0409-0028 4 5
0409-0030 4 5
0409-0032 4 5
0409-0035 4 5
0409-0036 4 5
0409-0038 4 5
0409-0039 4 5
0409-0040 4 5
0409-0043 4 5
0409-0045 4 5
0410-0002 4 8
0410-0003 4 6
0410-0005 4 6
0410-0006 4 6
0410-0010 4 8
0410-0011 4 6
0410-0012 4 6
0410-0013 4 6
0410-0015 4 8
0410-0017 4 8
0410-0018 4 8
0414-0010 4 5
0414-0017 5 7
0414-0018 5
0414-0019 5 7
0414-0020 5
0414-0021 5 7
0415-0001 5
0415-0004 5
0415-0005 5
0415-0011 5
0415-0012 5
0415-0013 5
0415-0014 5 7
0415-0016 5
0415-0017 5
0415-0019 5
0415-0020 5
0415-0025 5
AE_HCxJonf-145 5 8
AE_HCXJonf-148 5 8
AE_HCxJonf-157 5 8
AE_HCXJonf-162 5 8
AE_HCXJonf-168 5
AE_HCxJonf-175 5 7
AE_HCxJonf-183 5 7
AE_HCxJonf-185 5 8
AE0118-237 5 7
AE0118-238 5 8
AE0118-239 5 7
AE0118-240 5 8
AE0118-243 5 7
AE0118-244 5 7
AE0118-245 5 8
AE0118-246 5 8
AE0118-249 5 7
AE0206-159 5 7
AE0206-160 5 7
AE0206-161 5 8
AE0206-162 5 8
AE0206-163 5 7
AE0206-164 5 7
AE0206-165 5 8
AE0206-167 5 8
AE0206-168 5 7
AE0206-169 5 8
AE0206-170 5 8
AE0210-146 13 6
AE0210-147 5 6
AE0210-149 13 6
AE0210-150 5 6
AE0210-151 13 6
AE0210-152 13 7
AE0210-153 5 6
AE0210-154 5 6
AE0210-157 13 6
AE0210-158 5 6
AE0210-159 13 6
AE0210-162 5 6
AE0210-163 13 6
AE0210-164 13 6
AE0210-165 5 6
AE0210-166 13 6
AE0210-168 5 6
AE0210-169 5 6
AE0210-170 13 6
AE0210-171 5 6
AE0210-172 13 6
AE0210-173 5 6
AE0210-174 13 6
AE0213-175 6 7
AE0213-176 7
AE0213-177 5 7
AE0213-178 7
AE0213-179 5 6
AE0213-180 5 6
AE0213-181 5 7
AE0213-182 5 7
AE0213-183 6 7
AE0213-186 7
AE0213-187 5 6
AE0213-190 6 7
AE0213-193 7
AE0213-194 7
AE0213-195 5 7
AE0213-196 5 7
AE0213-197 5 7
AE0213-198 5 7
AE0213-199 5 6
AE0213-200 5 7
AE0213-201 5 7
AE0213-202 5 7
AE0213-205 7
AE0213-206 5 7
AE0251-323 4 5
AE0251-325 5
AE0251-327 4 5
AE0251-329 4 5
AE0251-330 4 5
AE0251-331 4 5
AE0251-342 5
AE0251-343 5
AE0406-239 5
AE0406-254 5
AE0406-258 5
AE0406-259 5
AE0406-263 4 5
AE0406-264 5
AE0406-266 4 5
AE0406-271 5 8
AE0406-274 5
AE0406-278 4 5
AE0406-281 5
AE0406-286 4 5
AE0406-288 4 5
AE0406-289 4 5
AE0406-294 4 5
AE0406-298 4 5
Minneiska 5 7
NJ 303955 7
PRI 612-1 5 6
Arlet 4 7
Co-op 39 5 7
Pinova 4 5
Scired 4 5
Scifresh 4 8
0409-0025 4 5
0409-0026 4 5
0409-0027 4 5
0409-0031 4 5
0409-0033 4 5
0409-0047 4 5
G-14-050 4 5
G-14-052 4 5
G-14-054 4 5
G-14-055 4 5
G-14-056 4 5
G-14-057 4 5
G-14-059 4 5
G-14-060 5
G-14-061 4 5
G-14-062 5
G-14-064 4 5
G-14-065 4 5
G-14-069 4 5
G-14-067 5
G-14-068 4 5
G-14-071 4 5
G-14-073 4 5
G-14-074 4 5
G-14-075 5
G-14-076 4 5
G-14-077 4 5
G-14-078 4 5
G-14-080 5
G-09-232 5 8
G-09-233 5 8
G-09-234 7 8
G-09-235 7 8
G-09-236 5
G-09-237 5
G-09-238 7 8
G-09-239 5
G-09-240 5 7
G-09-241 5
G-09-242 5 8
G-09-243 5
G-09-245 7 8
G-09-246 7 8
G-09-258 7 8
G-09-259 7 8
G-09-260 5 8
G-09-261 5
G-09-262 5 7
G-09-263 7 8
G-09-264 5
G-09-265 5 7
G-09-266 7 8
G-09-267 5 7
G-09-268 7 8
0408-0021 4 5
Wijcik McIntosh 5 7
Beauty of Bath 11
Priam 5 8
Northern Spy 4 7
Co-op 15 5 7
MN 1702 4 7
WA 2 4 5
WA 5 5 7
Pitmaston Pineapple 5 8
0411-0011 5 7
0411-0017 4 5
0411-0023 4 5
AE0250-086 4 5
AE0250-087 5
AE0250-089 4 5
AE0250-090 5
AE0250-092 5
AE0250-093 5
AE0250-094 4 5
AE0250-095 5
Sonya 4 5
Co-op 38 4 5
AE0250-096 5
AE0250-327 5
Co-op 30 5
Jonagrimes 3 6
AE0211-036 18 7
G-07-039 4 6
PRI 14-152 5 6
PRI 47-176 5 8
G-07-041 5 7
BC-8S-27-43 5
AE0250-091 5 7
AE0250-097 5 7
AE0250-325 5 7
AE0250-326 5 7
AE0250-329 5 7
AE0250-333 5 7
AE0250-334 5 6
AE0250-335 5 7
AE0250-336 5 6
AE0250-338 5 6
AE0250-341 5 6
AE0211-038 5 7
AE0211-043 5 6
AE0211-051 6 7
G-07-010 4 8
G-07-014 7 8
G-07-015 7 8
G-07-019 6 7
G-07-020 7 8
G-07-024 4 8
G-07-032 4 8
G-07-033 6 7
G-07-034 4 6
G-07-035 4 8
G-07-044 4 6
AE0211-053 7
AE0211-054 7
AE0250-088 5 7
AE0250-324 5 8
AE0250-328 5 7
AE0250-331 5 8
AE0250-332 5 8
AE0250-337 5 7
AE0250-339 5 8
Minnewashta 7 8
Autumn Crisp 5 7
G-14-066 5
Lu1-11-010 5
Lu1-11-013 5
Lu1-11-016 5
Lu1-11-017 5
Lu1-11-018 5
NJ 90 5
Lord Lambourne 7 8
Antonovka GH 6 7
Grimes Golden 3 4
Kidds Orange Red 5 8
Malus baccata Hansen #2 5 6
Malus baccata Jackii 6
Summerred 7
William's Pride 13 5
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-03-39Apple-RosBREED-3.9K-2019354.0755.06
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Haplotypes
Marker 2345678910111213141516171819202122
GDsnp00663ABABBBBBBB-A--BBA---A
RosBREEDSNP_SNP_AC_31095539_Lg3_01779_MAF30_MDP0000294017_exon13--AAAAB--AAAAAB-A---A
RosBREEDSNP_SNP_TC_31098089_Lg3_01779_MAF40_645461_exon2AAAABnullA-B-Anullnull--nullBBAnull-
Alignments
Feature NameTypeLocationAnalysis
Chr03 chromosome Chr03:29698090..30349273. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation