Mdo-HB-03-3

Haplotype Block Overview
Name Mdo-HB-03-3
Species Malus x domestica
Stock Haplotype [view all 430]
Haplotype [view all]
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 22 8
Rome Beauty Law 3
Jonafree 3 8
Redfree 3 66
Spartan 15 5
Wagener 23 3
Worcester Pearmain 3 8
Tsugaru 4 8
Golden Delicious 3 4
Fuji 5 8
Empire 15 5
Gala 3 4
Honeycrisp 3 4
Elstar 22 4
Marshall McIntosh 15 3
Cripps Pink 3 4
Granny Smith 13 4
Jonathan 3 8
Ralls Janet 12 8
Delicious 3 5
Discovery 8
Prima 15 17
821 15
Fiesta 3 8
Ingrid Marie 13 22
Idared 3
Esopus Spitzenburg 4 8
Braeburn 3 5
Sansa 3 4
Lodi 3
James Grieve 23 8
Cripps Red 3 4
Burgundy 3 4
Akane 3 8
Ambrosia 4 5
Aurora Golden Gala 3 4
Beacon 40 41
Ben Davis 17 4 5
Cameo 3 5
Chinook 3
Clivia 13 8
Co-op 17 3 5
Co-op 18 3 8
Dayton 15 17 3 4
Delblush 3 4
Delcorf 3
Delorgue 3 8
Dolgo 23 33
Geheimrat Dr. Oldenburg 13 8
Duchess of Oldenburg 3 5
Early Cortland 17 3
Empress 15 3
F2 26829-2-2 17 3
Fantazja 3 5
Fireside 23 5
Fortune 3 5
Frostbite 4 5
Ginger Gold 3 4
GMAL 4327 3 5
GMAL 4328 5
GMAL 4329 3 5
GMAL 4332 13 5
Goodland 15 5
Haralson 22 3
Honeygold 3
Hudson 4 5
Jersey Black 22
Jonamac 15 3
Keepsake 4
Kerr 23 3
Lady Williams 14 4
Liberty 22 3
Linda 15 5
Liveland Raspberry 4 52
Longfield 33 78
Macoun 22 3
Malinda 22 8
Mantet 3 32
Melba 15 52
MN 1627 3 4
MN 1628 4
MN 1691 23 5
MN 1706 3 4
MN 1708 4
MN 1760 4 5
MN 1764 3 5
MN 1789 23 3
MN 1802 4 5
MN 1836 3 4
MN 1837 23 4
MN 1839 4 8
MN 1888 23 3
MN 1899 3 4
MN 1940 22 3
MN 2016 22 3
AA-44 15 3
Monroe 3
Montgomery 3 8
Nicola 3 4
NJ 31 3 8
NJ 53 15 3
Oriole 3 4
PRI 14-126 17 3
PRI 14-510 17 3
PRI 16-144 3
PRI 1661-2 15 5
PRI 54-12 17 3
PRI 855-102 3
Primula 17 52
Raritan 15 4
Regent 22 3
Russian Seedling 67 68
Sawa 17 5
Sciros 3
Sharon 15 3
Silken 15 3
Wildung 15 5
Splendour 3
State Fair 22 3
NJ 55 3 4
Co-op 29 3 4
Sunrise 15 4
Sweet Sixteen 4 5
Topaz 23 3
Vista Bella 15 3
Wealthy 3 5
Winesap 3 5
Winter Banana 3 5
Yellow Newtown 3 74
Yellow Transparent 3
0407-0001 3
0407-0005 3
0407-0006 3 4
0407-0007 3 4
0407-0008 3
0408-0003 4 8
0408-0004 3 5
0408-0005 3 5
0408-0007 4 5
0408-0008 3 5
0408-0010 3 8
0408-0011 4 8
0408-0014 4 8
0408-0015 3 8
0409-0022 4
0409-0024 4
0409-0028 4
0409-0030 3
0409-0032 3 4
0409-0035 3 4
0409-0036 3 4
0409-0038 3 4
0409-0039 3
0409-0040 3
0409-0043 4
0409-0045 4
0410-0002 13 4
0410-0003 3 4
0410-0005 13 4
0410-0006 3 4
0410-0010 3 4
0410-0011 3 4
0410-0012 13 4
0410-0013 4
0410-0015 13 3
0410-0017 4
0410-0018 3 4
0414-0010 3
0414-0015 3 4
0414-0017 3 4
0414-0018 3 5
0414-0019 3 4
0414-0020 4 8
0414-0021 3 4
0415-0001 3 5
0415-0004 4 5
0415-0005 4 8
0415-0011 3 5
0415-0012 4 5
0415-0013 4 8
0415-0014 3 8
0415-0016 3 5
0415-0017 3 8
0415-0019 4 5
0415-0020 4 8
0415-0025 4 5
AE_HCxJonf-145 4 8
AE_HCXJonf-148 3 4
AE_HCxJonf-157 3
AE_HCXJonf-162 4 8
AE_HCXJonf-168 3
AE_HCxJonf-175 3 8
AE_HCxJonf-183 3
AE_HCxJonf-185 3
AE0118-237 3 4
AE0118-238 3 4
AE0118-239 4 8
AE0118-240 22 4
AE0118-243 3 4
AE0118-244 3
AE0118-245 3
AE0118-246 3 4
AE0118-249 3 4
AE0206-159 22 3
AE0206-160 22 3
AE0206-161 3 5
AE0206-162 4 5
AE0206-163 4 5
AE0206-164 22 4
AE0206-165 4 5
AE0206-167 3 5
AE0206-168 4 5
AE0206-169 4 5
AE0206-170 4 5
AE0210-146 3 4
AE0210-147 15 5
AE0210-149 15 5
AE0210-150 15 5
AE0210-151 3 4
AE0210-152 15 5
AE0210-153 3 4
AE0210-154 3 4
AE0210-157 3 4
AE0210-158 4 5
AE0210-159 15 5
AE0210-162 15 5
AE0210-163 3 4
AE0210-164 15 5
AE0210-165 4 5
AE0210-166 15 3
AE0210-168 4 5
AE0210-169 4 5
AE0210-170 15 3
AE0210-171 4 5
AE0210-172 4 5
AE0210-173 3 4
AE0210-174 15 3
AE0213-175 3 5
AE0213-176 3 5
AE0213-177 4 5
AE0213-178 3 5
AE0213-179 13 4
AE0213-180 4 5
AE0213-181 4 5
AE0213-182 4 5
AE0213-183 13 4
AE0213-186 13 4
AE0213-187 3 5
AE0213-190 4 5
AE0213-193 13 3
AE0213-194 13 3
AE0213-195 4 5
AE0213-196 3 5
AE0213-197 13 4
AE0213-198 4 5
AE0213-199 4 5
AE0213-200 13 4
AE0213-201 13 4
AE0213-202 13 4
AE0213-205 13 3
AE0213-206 13 3
AE0251-323 3 5
AE0251-325 4
AE0251-327 4
AE0251-329 4
AE0251-330 4 5
AE0251-331 3 4
AE0251-342 4 5
AE0251-343 4 5
AE0406-239 15 3
AE0406-254 15 3
AE0406-258 15 4
AE0406-259 15 4
AE0406-264 15 4
AE0406-266 3 4
AE0406-271 3
AE0406-274 15 4
AE0406-278 3
AE0406-281 3
AE0406-286 3 4
AE0406-288 3
AE0406-289 3
AE0406-294 15 3
AE0406-298 3
Minneiska 4 5
NJ 303955 3
PRI 612-1 3 5
Arlet 3
Co-op 39 3
Pinova 13 4
Scired 3
Scifresh 4 5
0409-0025 3 4
0409-0026 3 4
0409-0027 3
0409-0031 3
0409-0033 3
0409-0047 3
G-14-050 4 5
G-14-052 4
G-14-054 13 5
G-14-055 13 5
G-14-056 13 4
G-14-057 4
G-14-059 13 5
G-14-060 13 4
G-14-061 4 5
G-14-062 13 4
G-14-064 4 5
G-14-065 13 4
G-14-069 4
G-14-067 13 5
G-14-068 13 4
G-14-071 13 5
G-14-073 13 5
G-14-074 4 5
G-14-075 4
G-14-076 4
G-14-077 4
G-14-078 4
G-14-080 4 5
G-09-232 4 5
G-09-233 3 4
G-09-234 3 4
G-09-235 3
G-09-236 3
G-09-237 3
G-09-238 3 5
G-09-239 4 5
G-09-240 4 5
G-09-241 3 4
G-09-242 3
G-09-243 4 5
G-09-245 3 5
G-09-246 3 4
G-09-258 3 4
G-09-259 4 5
G-09-260 3
G-09-261 3 5
G-09-262 3 4
G-09-263 4 5
G-09-264 3
G-09-265 4 5
G-09-266 4 5
G-09-267 3 4
G-09-268 3 4
0408-0021 3 5
Wijcik McIntosh 4 71
Priam 17 3
Northern Spy 4 8
Co-op 15 3 5
MN 1702 4 5
WA 2 3 4
WA 5 3
Pitmaston Pineapple 3 4
0411-0011 3 8
0411-0017 3 5
0411-0023 3 8
AE0250-086 4 5
AE0250-087 4
AE0250-089 4
AE0250-090 3 5
AE0250-092 3 4
AE0250-093 4
AE0250-094 4
AE0250-095 4
Sonya 4 5
Co-op 38 4 5
AE0250-096 4 5
AE0250-327 4 5
Co-op 30 5 8
Jonagrimes 3 5
AE0211-036 3
G-07-039 3 64
PRI 14-152 3
PRI 47-176 3 8
G-07-041 4 5
BC-8S-27-43 3 4
AE0250-091 3 4
AE0250-097 3 4
AE0250-325 3 4
AE0250-326 3
AE0250-329 3 4
AE0250-333 3 4
AE0250-334 3 4
AE0250-335 3 4
AE0250-336 4 5
AE0250-338 3 5
AE0250-341 3 4
AE0211-038 3 5
AE0211-043 4 5
AE0211-045 3 5
AE0211-051 4 5
G-07-010 3 4
G-07-014 13 3
G-07-015 4
G-07-019 13 4
G-07-020 3 4
G-07-024 4
G-07-032 4
G-07-033 13 3
G-07-034 4
G-07-035 4
G-07-044 3 4
AE0211-053 22 4
AE0211-054 22 3
AE0250-088 3 5
AE0250-324 22 3
AE0250-328 22 4
AE0250-331 22 3
AE0250-332 22 4
AE0250-337 4 5
AE0250-339 22 3
Minnewashta 22 5
Autumn Crisp 3 4
G-14-066 13 4
Lu1-11-010 3 8
Lu1-11-013 3 5
Lu1-11-016 3 8
Lu1-11-017 3 5
Lu1-11-018 3 5
NJ 90 3 5
Lord Lambourne 23 3
Antonovka GH 14 75
Grimes Golden 3
Kidds Orange Red 3 8
Malus baccata Hansen #2 64
Malus baccata Jackii 15 64
Summerred 3 36
William's Pride 3 8
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-03-3Apple-RosBREED-3.9K-201931.11.1
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Haplotypes
Marker 23456789101112131415161718192021222324252627282930313233343536373839404142434445464748495051525354555657585960616263646566676869707172737475767778798081828384858687
GDsnp00866AABBABABAABBBBBBBABAAB---A-----BB-BAAABAABBBA-BBABAABABA-ABAABABBBBABAABBA--BBABA-AABB
RosBREEDSNP_SNP_AG_1122860_Lg3_00866_MAF20_422432_exon2AAAAAABAABAAAAAAAAAAAAAAA-A----AAAABABAAAAB---AAAAAAABAA-AA--AAABAAAAAAABAABAAB--AABBA
RosBREEDSNP_SNP_AG_1131825_Lg3_00866_MAF50_MDP0000151511_exon2BBAABABABBAABAAAABABBABAAB-----AA-ABBBBABAAAB-AABABBABAB-AABB-A-BAAABBABAA--AABAB-BBAA
RosBREEDSNP_SNP_CA_1101058_Lg3_00866_MAF40_1635871_exon1-BBABBB----ABB-BABABBABABBBB---AABB--BAB---ABBA--BBBABBBBBBBBBBBBABABBABBBABABB--BABAA
RosBREEDSNP_SNP_CA_1105743_Lg3_00866_MAF20_1662285_exon1-BBABBBAB--BBBBBABABBABABBBBB--AABB--BBABA----A----BAB--BABBBBBBBABBABABBB--B----BAB-A
RosBREEDSNP_SNP_GA_17380823_Lg6_RosCOS414_MAF20_1680701_exon1-BBBBBBBB--BBBBA--BBAABBBB--BBABAB---BBABB-BB-AABBABA---BB-BBBBBBBBBABBBBB--BBB--BBBBA
RosBREEDSNP_SNP_GT_1107969_Lg3_00866_MAF30_1670927_exon2-BBA--BAB--ABBBBABABBABABBBBB----BB--BBA---AB-A----ABB--BABBBBBBBBABABABBBAB-BB--BABAA
RosBREEDSNP_SNP_TC_1142062_Lg3_00866_MAF50_MDP0000268101_exon2AAAB--BBABBBABBBBA--ABABA------BB-BAB-BA--B----ABBAABBBA-AAABAB-BBBBABABBA--BAB--ABABA
Alignments
Feature NameTypeLocationAnalysis
Chr03 chromosome Chr03:19563..622073. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation