Mdo-HB-03-23

Haplotype Block Overview
Name Mdo-HB-03-23
Species Malus x domestica
Stock Haplotype [view all 428]
Haplotype [view all]
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 3 4
Rome Beauty Law 3
Jonafree 3 4
Redfree 3
Spartan 4
Wagener 4 5
Worcester Pearmain 4
Tsugaru 4
Golden Delicious 3 4
Fuji 3 4
Empire 4
Gala 4
Honeycrisp 4
Elstar 4
Marshall McIntosh 3 4
Cripps Pink 3 4
Granny Smith 3 4
Jonathan 4
Ralls Janet 3 4
Delicious 4
Discovery 4
Prima 3
Fiesta 4
Ingrid Marie 3 4
Idared 4 5
Esopus Spitzenburg 4
Braeburn 4
Sansa 4
Lodi 3 9
James Grieve 4
Cripps Red 4
Burgundy 3 4
Akane 4
Ambrosia 4
Aurora Golden Gala 4
Beacon 3 5
Ben Davis 2 3 4
Cameo 4
Chinook 3 4
Clivia 4
Co-op 17 3 4
Co-op 18 3 4
Dayton 3 4
Delblush 3
Delorgue 4
Dolgo 2
Geheimrat Dr. Oldenburg 3 4
Duchess of Oldenburg 2 5
Early Cortland 2 3
Empress 3 4
F2 26829-2-2 3 5
Fantazja 3 5
Fireside 4 5
Fortune 3 4
Frostbite 4 5
Ginger Gold 3 4
GMAL 4327 4 5
GMAL 4328 2 4
GMAL 4329 4 5
GMAL 4332 4 5
Goodland 3 5
Haralson 3 4
Honeygold 3 4
Hudson 4
Jersey Black 3
Jonamac 4
Keepsake 4
Kerr 2 4
Lady Williams 3 4
Liberty 3 4
Linda 4 5
Liveland Raspberry 3 5
Longfield 2 4
Macoun 3 4
Malinda 3 4
Melba 3 5
Melrose 4
MN 1627 2 4
MN 1628 4 5
MN 1691 4 5
MN 1706 10 14
MN 1708 4
MN 1760 5
MN 1764 5
MN 1789 2 4
MN 1802 4 5
MN 1836 4
MN 1837 4
MN 1839 4
MN 1888 4
MN 1899 4 5
MN 1940 4
MN 2016 4 5
AA-44 4
Monroe 3 4
Montgomery 9
Nicola 4
NJ 31 3 4
NJ 53 7
Oriole 3 4
PRI 14-126 3
PRI 14-510 3
PRI 1661-2 4
PRI 54-12 4 5
PRI 855-102 4
Primula 4 5
Raritan 10 3
Regent 3 4
Russian Seedling 4 5
Sawa 4 5
Sciros 3 4
Sharon 3 4
Silken 3 4
Wildung 4 5
Splendour 3 4
State Fair 4
NJ 55 3 4
Co-op 29 4
Sunrise 3 4
Sweet Sixteen 4
Topaz 3 4
Vista Bella 3 7
Wealthy 4 5
Winesap 3 4
Winter Banana 3 5
Yellow Newtown 3
Yellow Transparent 3 4
0407-0001 3 4
0407-0005 4
0407-0006 3 4
0407-0007 3 4
0407-0008 3 4
0408-0003 4
0408-0004 4
0408-0005 4
0408-0007 4
0408-0008 4
0408-0010 4
0408-0011 4
0408-0014 4
0408-0015 4
0409-0022 4
0409-0024 4
0409-0028 4
0409-0030 4
0409-0032 4
0409-0035 4
0409-0036 4
0409-0038 4
0409-0039 4
0409-0040 4
0409-0043 4
0409-0045 4
0410-0002 3 4
0410-0003 4
0410-0005 3 4
0410-0006 4
0410-0010 3 4
0410-0011 3 4
0410-0012 4
0410-0013 4
0410-0015 3 4
0410-0017 3 4
0410-0018 4
0414-0010 3 4
0414-0015 3 4
0414-0017 4
0414-0018 4
0414-0019 4
0414-0020 4
0414-0021 4
0415-0001 4
0415-0004 4
0415-0005 4
0415-0011 4
0415-0012 4
0415-0013 4
0415-0014 4
0415-0016 4
0415-0017 4
0415-0019 4
0415-0020 4
0415-0025 4
AE_HCxJonf-145 4
AE_HCXJonf-148 4
AE_HCxJonf-157 4
AE_HCXJonf-162 4
AE_HCXJonf-168 4
AE_HCxJonf-175 3 4
AE_HCxJonf-183 3 4
AE_HCxJonf-185 4
AE0118-237 3 4
AE0118-238 4
AE0118-239 4
AE0118-240 4
AE0118-243 3 4
AE0118-244 4
AE0118-245 4
AE0118-246 4
AE0118-249 3 4
AE0206-159 4
AE0206-160 4
AE0206-161 4
AE0206-162 4
AE0206-163 4 5
AE0206-164 4 5
AE0206-165 4
AE0206-167 4 5
AE0206-168 4
AE0206-169 4
AE0206-170 4
AE0210-146 3 5
AE0210-147 3 5
AE0210-149 3 4
AE0210-150 4
AE0210-151 3 5
AE0210-152 3 5
AE0210-153 4
AE0210-154 4
AE0210-157 3 5
AE0210-158 4 5
AE0210-159 3 4
AE0210-162 4
AE0210-163 4
AE0210-164 3 4
AE0210-165 4 5
AE0210-166 4
AE0210-168 4 5
AE0210-169 4 5
AE0210-170 3 4
AE0210-171 4
AE0210-172 3 4
AE0210-173 4 5
AE0210-174 3 4
AE0213-175 3 4
AE0213-176 3 4
AE0213-177 4 5
AE0213-178 3 4
AE0213-179 4
AE0213-180 4
AE0213-181 4 5
AE0213-182 4
AE0213-183 4
AE0213-186 3 5
AE0213-187 4
AE0213-190 3 4
AE0213-193 3 4
AE0213-194 3 4
AE0213-195 4 5
AE0213-196 4 5
AE0213-197 4 5
AE0213-198 3 4
AE0213-199 4
AE0213-200 4 5
AE0213-201 4 5
AE0213-202 4 5
AE0213-205 3 5
AE0213-206 4 5
AE0251-323 4
AE0251-325 4
AE0251-327 4
AE0251-329 4
AE0251-330 4
AE0251-331 4
AE0251-342 4
AE0251-343 4
AE0406-239 4
AE0406-254 4
AE0406-258 4
AE0406-259 4
AE0406-263 3 4
AE0406-264 4
AE0406-266 3 4
AE0406-271 3 4
AE0406-274 4
AE0406-278 3 4
AE0406-281 4
AE0406-286 3 4
AE0406-288 3 4
AE0406-289 3 4
AE0406-294 4
AE0406-298 3 4
Minneiska 4 5
PRI 612-1 3 4
Arlet 3 4
Co-op 39 4
Pinova 3 4
Scired 3 4
Scifresh 4
0409-0025 4
0409-0026 4
0409-0027 4
0409-0031 4
0409-0033 4
0409-0047 4
G-14-050 3 4
G-14-052 3 4
G-14-054 4
G-14-055 4
G-14-056 3 4
G-14-057 3 4
G-14-059 4
G-14-060 4
G-14-061 3 4
G-14-062 3 4
G-14-064 3 4
G-14-065 3 4
G-14-069 3 4
G-14-067 4
G-14-068 3 4
G-14-071 4
G-14-073 4
G-14-074 3 4
G-14-075 3 4
G-14-076 3 4
G-14-077 3 4
G-14-078 3 4
G-14-080 4
G-09-232 4
G-09-233 4
G-09-234 3 4
G-09-235 3 4
G-09-236 4
G-09-237 4
G-09-238 3 4
G-09-239 4
G-09-240 3 4
G-09-241 4
G-09-242 3 4
G-09-243 4
G-09-245 3 4
G-09-246 3 4
G-09-258 3 4
G-09-259 3 4
G-09-260 4
G-09-261 4
G-09-262 3 4
G-09-263 4
G-09-264 4
G-09-265 3 4
G-09-266 4
G-09-267 4
G-09-268 3 4
0408-0021 4
Wijcik McIntosh 10 14
Beauty of Bath 4 9
Priam 3 4
Northern Spy 4
Co-op 15 11 4
MN 1702 5
WA 2 4
WA 5 11 4
Pitmaston Pineapple 4
0411-0011 4
0411-0017 3 4
0411-0023 4
AE0250-086 4
AE0250-087 4
AE0250-089 4
AE0250-090 4
AE0250-092 4
AE0250-093 4
AE0250-094 4
AE0250-095 4
Sonya 4
Co-op 38 4
AE0250-096 4 5
AE0250-327 4 5
Co-op 30 4
Jonagrimes 3 5
AE0211-036 3 4
G-07-039 3 4
PRI 14-152 4 5
PRI 47-176 3 4
G-07-041 4
BC-8S-27-43 4
AE0250-091 4
AE0250-097 4
AE0250-325 4
AE0250-326 4 5
AE0250-329 4 5
AE0250-333 4 5
AE0250-334 4 5
AE0250-335 4 5
AE0250-336 4 5
AE0250-338 4
AE0250-341 4
AE0211-038 2 3
AE0211-043 2 4
AE0211-045 2 3
AE0211-051 2 3
G-07-010 3 4
G-07-014 3 4
G-07-015 4
G-07-019 3 4
G-07-020 4
G-07-024 3 4
G-07-032 4
G-07-033 3 4
G-07-034 4
G-07-035 3 4
G-07-044 4
AE0211-053 3 4
AE0211-054 3 5
AE0250-088 4 5
AE0250-324 4
AE0250-328 4
AE0250-331 4
AE0250-332 4
AE0250-337 4 5
AE0250-339 4
Minnewashta 4 5
Autumn Crisp 4
G-14-066 4
Lu1-11-010 3
Lu1-11-013 3
Lu1-11-016 3
Lu1-11-017 3 4
Lu1-11-018 3 4
NJ 90 4
Lord Lambourne 4
Antonovka GH 4
Grimes Golden 2 3
Kidds Orange Red 4
Malus baccata Hansen #2 3
Malus baccata Jackii 3
Summerred 4
William's Pride 3 4
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-03-23Apple-RosBREED-3.9K-2019326.9526.95
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Haplotypes
Marker 234567891011121314151617
GDsnp02020ABAAAA-BAB-BB-BA
RosBREEDSNP_SNP_CT_13512352_Lg3_57248__57248_exon1BBAABAABBA-AABB-
RosBREEDSNP_SNP_GA_12760479_Lg3_02020_MAF50_1633838_exon4BABA--B-AAA-BAB-
Alignments
Feature NameTypeLocationAnalysis
Chr03 chromosome Chr03:12178076..12809930. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation