Mdo-HB-03-20

Haplotype Block Overview
Name Mdo-HB-03-20
Species Malus x domestica
Stock Haplotype [view all 421]
Haplotype [view all]
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 2 3
Rome Beauty Law 2 3
Jonafree 2 3
Redfree 18 41
Spartan 3 9
Wagener 17 3
Worcester Pearmain 17 2
Tsugaru 2 3
Golden Delicious 2 3
Fuji 2 9
Empire 3 9
Gala 3
Honeycrisp 3 9
Elstar 3
Marshall McIntosh 2 3
Cripps Pink 2 3
Granny Smith 2 3
Jonathan 2 3
Delicious 3 9
Discovery 17 3
Prima 2
821 14
Fiesta 3
Ingrid Marie 2 3
Idared 17 3
Esopus Spitzenburg 11 3
Braeburn 2 9
Sansa 2 3
Lodi 2
James Grieve 2 3
Cripps Red 3
Burgundy 3
Akane 17 2
Ambrosia 3 9
Aurora Golden Gala 3
Beacon 33 34
Ben Davis 2 3
Cameo 3 9
Chinook 2 3
Clivia 17 3
Co-op 17 2
Co-op 18 19 39
Dayton 2 3
Delblush 2
Delorgue 2 3
Geheimrat Dr. Oldenburg 17 47
Duchess of Oldenburg 17 8
Early Cortland 2 3
Empress 2
F2 26829-2-2 2 3
Fantazja 2 8
Fireside 28 8
Fortune 3 9
Frostbite 3 8
Ginger Gold 2 3
GMAL 4327 12 17
GMAL 4328 29
GMAL 4329 17 3
GMAL 4332 29 8
Goodland 3
Haralson 2 3
Honeygold 2 3
Hudson 3 9
Jonamac 2 3
Keepsake 3 9
Kerr 3 8
Lady Williams 10 3
Liberty 2 3
Linda 2 8
Longfield 17 3
Macoun 2 3
Malinda 2 3
Melba 2
Melrose 2 3
MN 1627 17 3
MN 1628 3 8
MN 1691 28 3
MN 1706 2 9
MN 1708 3 9
MN 1760 4 9
MN 1764 3 8
MN 1789 17 28
MN 1802 3 8
MN 1836 3 9
MN 1837 28 3
MN 1839 28 3
MN 1888 28 3
MN 1899 3 8
MN 1940 2 3
MN 2016 3
AA-44 2 3
Monroe 2 3
Montgomery 2 8
Nicola 3
NJ 31 2
NJ 53 2 8
Oriole 3
PRI 14-126 2
PRI 14-510 2
PRI 1661-2 3 9
PRI 54-12 3
PRI 855-102 3
Primula 2
Raritan 19 39
Regent 2 3
Russian Seedling 37 42
Sawa 2 8
Sciros 2 3
Sharon 2 3
Silken 2 3
Wildung 3 8
Splendour 2 3
State Fair 3
NJ 55 2 3
Co-op 29 3
Sunrise 2 3
Sweet Sixteen 3 8
Topaz 2
Vista Bella 2
Wealthy 3 8
Winesap 2 3
Winter Banana 22 39
Yellow Newtown 2
Yellow Transparent 17 2
0407-0001 2 3
0407-0005 3
0407-0006 2 3
0407-0007 2 3
0407-0008 2 3
0408-0003 3
0408-0004 3 9
0408-0005 3
0408-0007 3 9
0408-0008 3 9
0408-0010 3 9
0408-0011 3
0408-0014 3 9
0408-0015 3
0409-0022 3
0409-0024 3
0409-0028 3
0409-0030 3
0409-0032 3
0409-0035 3 9
0409-0036 3
0409-0038 3 9
0409-0039 3 9
0409-0040 3 9
0409-0043 3 9
0409-0045 3 9
0410-0002 2 3
0410-0003 3
0410-0005 2 3
0410-0006 3
0410-0010 2 3
0410-0011 2 3
0410-0012 3
0410-0013 3
0410-0015 2 3
0410-0017 2 3
0410-0018 3
0414-0010 2 3
0414-0015 2 9
0414-0017 3 9
0414-0018 3 9
0414-0019 3 9
0414-0020 9
0414-0021 3 9
0415-0001 3
0415-0004 9
0415-0005 3
0415-0011 9
0415-0012 9
0415-0013 3 9
0415-0014 3 9
0415-0016 3 9
0415-0017 3 9
0415-0019 9
0415-0020 3
0415-0025 9
AE_HCxJonf-145 3 9
AE_HCXJonf-148 3 9
AE_HCXJonf-162 3 9
AE_HCXJonf-168 3
AE_HCxJonf-175 2 9
AE_HCxJonf-183 2 3
AE_HCxJonf-185 3
AE0118-237 2 9
AE0118-238 2 9
AE0118-239 28 9
AE0118-240 3 9
AE0118-243 2 3
AE0118-244 3
AE0118-245 3
AE0118-246 3
AE0118-249 2 9
AE0206-159 3
AE0206-160 3
AE0206-161 3
AE0206-162 3
AE0206-163 3
AE0206-164 3
AE0206-165 3
AE0206-167 3
AE0206-168 3
AE0206-169 3
AE0206-170 3
AE0210-146 2 3
AE0210-147 2 3
AE0210-149 17 2
AE0210-150 17 3
AE0210-151 2 3
AE0210-152 2 3
AE0210-153 17 3
AE0210-154 17 3
AE0210-157 3
AE0210-158 3
AE0210-159 2 3
AE0210-162 17 3
AE0210-163 17 3
AE0210-164 17 2
AE0210-165 3
AE0210-166 17 3
AE0210-168 3
AE0210-169 3
AE0210-170 17 2
AE0210-171 17 3
AE0210-172 17 2
AE0210-173 17 3
AE0210-174 17 2
AE0213-175 2 29
AE0213-176 2 29
AE0213-177 3 8
AE0213-178 2 29
AE0213-179 29 3
AE0213-180 29 3
AE0213-181 3 8
AE0213-182 29 3
AE0213-183 3 8
AE0213-186 2 8
AE0213-187 29 3
AE0213-190 2 29
AE0213-193 2 29
AE0213-194 2 29
AE0213-195 3 8
AE0213-196 3 8
AE0213-197 3 8
AE0213-198 2 3
AE0213-199 29 3
AE0213-200 3 8
AE0213-201 3 8
AE0213-202 3 8
AE0213-205 2 8
AE0213-206 3 8
AE0251-323 3
AE0251-325 3
AE0251-327 3
AE0251-329 3
AE0251-330 3
AE0251-331 3
AE0251-342 3 8
AE0251-343 3 8
AE0406-239 3
AE0406-254 3 9
AE0406-258 3
AE0406-259 3
AE0406-263 2 3
AE0406-264 3 9
AE0406-266 2 9
AE0406-271 2 3
AE0406-274 3
AE0406-278 2 3
AE0406-281 2 3
AE0406-286 2 9
AE0406-288 2 3
AE0406-289 2 3
AE0406-294 3
AE0406-298 2 3
Minneiska 3
PRI 612-1 2 9
Arlet 2 3
Co-op 39 19 39
Pinova 17 2
Scired 2 3
Scifresh 2 3
0409-0025 3
0409-0026 3 9
0409-0027 3
0409-0031 3 9
0409-0033 3
0409-0047 3
G-14-050 2 9
G-14-052 2 3
G-14-054 17 3
G-14-055 17 3
G-14-056 17 9
G-14-057 2 3
G-14-059 17 3
G-14-060 17 3
G-14-061 2 9
G-14-062 2 3
G-14-064 2 9
G-14-065 2 9
G-14-069 2 3
G-14-067 17 3
G-14-068 2 3
G-14-071 17 3
G-14-073 17 3
G-14-074 2 9
G-14-075 2 9
G-14-076 2 3
G-14-077 2 3
G-14-078 2 9
G-14-080 17 9
G-09-232 3 9
G-09-233 3 9
G-09-234 2
G-09-235 2
G-09-236 3 9
G-09-237 3 9
G-09-238 2
G-09-239 3 9
G-09-240 2 9
G-09-241 3 9
G-09-242 2
G-09-243 3 9
G-09-245 2 9
G-09-246 2
G-09-258 2
G-09-259 2 9
G-09-260 2 3
G-09-261 3 9
G-09-262 2 3
G-09-263 3 9
G-09-264 2 3
G-09-265 2 9
G-09-266 3 9
G-09-267 2 3
G-09-268 2
0408-0021 3
Wijcik McIntosh 2 3
Beauty of Bath 2 3
Priam 2
Northern Spy 3 9
Co-op 15 8 9
MN 1702 8
WA 2 3
WA 5 3 8
Pitmaston Pineapple 3
0411-0011 3
0411-0017 2 9
0411-0023 3
AE0250-086 3 8
AE0250-087 3
AE0250-089 3
AE0250-090 3 8
AE0250-092 3
AE0250-093 3 8
AE0250-094 3
AE0250-095 3 8
Sonya 3 9
Co-op 38 2 3
AE0250-096 3
AE0250-327 3
Co-op 30 3 9
Jonagrimes 8
AE0211-036 17 2
G-07-039 2
G-07-041 2 9
BC-8S-27-43 3
AE0250-091 17 9
AE0250-097 17 9
AE0250-325 17 9
AE0250-326 12 3
AE0250-329 12 9
AE0250-333 12 9
AE0250-334 12 9
AE0250-335 17 3
AE0250-336 12 3
AE0250-338 17 3
AE0250-341 17 9
AE0211-038 2 29
AE0211-043 29 3
AE0211-045 2 29
AE0211-051 2 29
G-07-010 2 3
G-07-014 2
G-07-015 2 3
G-07-019 2 3
G-07-020 2 3
G-07-024 2 3
G-07-032 3
G-07-033 2
G-07-034 3
G-07-035 2 3
G-07-044 2 3
AE0211-053 2 3
AE0211-054 2 3
AE0250-088 3
AE0250-324 3
AE0250-328 3
AE0250-331 3
AE0250-332 3 9
AE0250-337 3 9
AE0250-339 3 9
Minnewashta 3
Autumn Crisp 2 3
G-14-066 17 9
Lu1-11-010 2
Lu1-11-013 2 9
Lu1-11-016 2
Lu1-11-017 2 9
Lu1-11-018 2 9
NJ 90 9
Lord Lambourne 2
Antonovka GH 38 9
Kidds Orange Red 3
Malus baccata Hansen #2 41 45
Malus baccata Jackii 11
Summerred 3
William's Pride 2
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-03-20Apple-RosBREED-3.9K-2019324.5724.57
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Haplotypes
Marker 23456789101112131415161718192021222324252627282930313233343536373839404142434445464748
RosBREEDSNP_SNP_AG_28402636_Lg15_RosCOS3315_MAF20_467121_exon1AABAAABAAAAAAAAAAAABAAAAABAB---BA--AAAAAB--A-BB
RosBREEDSNP_SNP_CA_28413370_Lg15_RosCOS3315_MAF50_368974_exon1BAAB--BBBBB----AABABB-BBA-ABAABBB---AA-B---BBBB
RosBREEDSNP_SNP_CT_28399563_Lg15_RosCOS3315_MAF30_254499_exon3ABBBBBBBBBB--BABAABBA----BBBBBAAB--BAB-BBBAAABA
RosBREEDSNP_SNP_CT_28411102_Lg15_RosCOS3315_MAF30_187882_exon1ABBBBBBBABB--BABBBAAB-BABBBBBBABABBBAABABBABABA
RosBREEDSNP_SNP_TC_28385293_Lg15_RosCOS3315_MAF10_1650912_exon1AABA--BABBBABAAAAAABAAAAABBAA--BAAAAAAAABBABABB
RosBREEDSNP_SNP_TG_28405696_Lg15_RosCOS3315_MAF20_MDP0000543782_exon2AABBBABAAAB--AABAABABAAAABABABAABBABAAAAA--AAAB
Alignments
Feature NameTypeLocationAnalysis
Chr03 chromosome Chr03:10315230..12341504. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation