Mdo-HB-03-17

Haplotype Block Overview
Name Mdo-HB-03-17
Species Malus x domestica
Stock Haplotype [view all 425]
Haplotype [view all]
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 4 7
Rome Beauty Law 3
Jonafree 3 4
Redfree 4 7
Spartan 3 4
Wagener 3
Worcester Pearmain 3 7
Tsugaru 4
Golden Delicious 3 4
Fuji 4
Empire 3 4
Gala 4
Honeycrisp 4
Elstar 4 7
Marshall McIntosh 3 4
Cripps Pink 3
Granny Smith 3 4
Jonathan 10 4
Ralls Janet 4
Delicious 4
Discovery 3 6
Prima 3 4
Fiesta 4
Ingrid Marie 4 7
Idared 3 4
Esopus Spitzenburg 3 4
Braeburn 4
Sansa 10 4
Lodi 4
James Grieve 4
Cripps Red 3 4
Burgundy 3 4
Akane 10 3
Ambrosia 4
Aurora Golden Gala 4
Beacon 15 4
Ben Davis 3 4 7
Cameo 4
Chinook 3 4
Clivia 3 4
Co-op 17 3 4
Co-op 18 3 4
Dayton 3 4
Delblush 3
Delorgue 10 4
Dolgo 4
Geheimrat Dr. Oldenburg 3
Duchess of Oldenburg 3 5
Early Cortland 3 4
Empress 10 4
F2 26829-2-2 3 7
Fantazja 4 5
Fireside 3 5
Fortune 10 4
Frostbite 4 5
Ginger Gold 4
GMAL 4327 10 3
GMAL 4328 3
GMAL 4329 3
GMAL 4332 3
Goodland 3
Haralson 4 7
Honeygold 3 4
Hudson 3 4
Jersey Black 4
Jonamac 10 3
Keepsake 4
Kerr 4
Lady Williams 3 4
Liberty 4
Linda 3 5
Longfield 3 4
Macoun 3 4
Malinda 3 7
Mantet 3
Melba 4
Melrose 10 4
MN 1627 3 4
MN 1628 3 4
MN 1691 3
MN 1706 4
MN 1708 4
MN 1760 4 5
MN 1764 4 5
MN 1789 3
MN 1802 4 5
MN 1836 3 4
MN 1837 3 4
MN 1839 3 4
MN 1888 3 4
MN 1899 5 7
MN 1940 10 4
MN 2016 3 4
AA-44 10 3
Monroe 10 3
Montgomery 4
Nicola 4
NJ 31 3
NJ 53 4 5
Oriole 4
PRI 14-126 3 7
PRI 14-510 3
PRI 1661-2 3 4
PRI 54-12 4
PRI 855-102 4
Primula 10 4
Raritan 4 7
Regent 4 7
Russian Seedling 10 3
Sawa 10 5
Sciros 3 4
Sharon 3 7
Silken 3 4
Wildung 3 5
Splendour 3 4
State Fair 3 4
NJ 55 4
Co-op 29 3 4
Sunrise 4
Sweet Sixteen 3 5
Topaz 3 7
Vista Bella 4
Wealthy 4 5
Winesap 4
Winter Banana 26 4
Yellow Newtown 3 4
Yellow Transparent 3 4
0407-0001 3 4
0407-0005 4
0407-0006 3 4
0407-0007 3 4
0407-0008 3 4
0408-0003 4
0408-0004 4
0408-0005 4
0408-0007 4
0408-0008 4
0408-0010 4
0408-0011 4
0408-0014 4
0408-0015 4
0409-0022 4
0409-0024 4
0409-0028 4
0409-0030 4
0409-0032 4
0409-0035 4
0409-0036 4
0409-0038 4
0409-0039 4
0409-0040 4
0409-0043 4
0409-0045 4
0410-0002 4
0410-0003 3 4
0410-0005 4
0410-0006 3 4
0410-0010 3 4
0410-0011 4
0410-0012 4
0410-0013 3 4
0410-0015 4
0410-0017 4
0410-0018 3 4
0414-0010 3 4
0414-0015 3 4
0414-0017 4
0414-0018 4
0414-0019 4
0414-0020 4
0414-0021 4
0415-0001 4
0415-0004 4
0415-0005 4
0415-0011 4
0415-0012 4
0415-0013 4
0415-0014 4
0415-0016 4
0415-0017 4
0415-0019 4
0415-0020 4
0415-0025 4
AE_HCxJonf-145 4
AE_HCXJonf-148 4
AE_HCXJonf-162 4
AE_HCXJonf-168 4
AE_HCxJonf-175 3 4
AE_HCxJonf-183 4
AE_HCxJonf-185 4
AE0118-237 4
AE0118-238 4
AE0118-239 4
AE0118-240 4 7
AE0118-243 4
AE0118-244 4
AE0118-245 4 7
AE0118-246 4
AE0118-249 4
AE0206-159 4
AE0206-160 4
AE0206-161 3 4
AE0206-162 4
AE0206-163 3 4
AE0206-164 3 4
AE0206-165 3 4
AE0206-167 3 4
AE0206-168 4
AE0206-169 4
AE0206-170 4
AE0210-146 3 4
AE0210-147 3 4
AE0210-149 3 4
AE0210-150 3 4
AE0210-151 3 4
AE0210-152 3 4
AE0210-153 3 4
AE0210-154 3 4
AE0210-157 3 4
AE0210-158 3 4
AE0210-159 3 4
AE0210-162 3 4
AE0210-163 3 4
AE0210-164 3 4
AE0210-165 3 4
AE0210-166 3 4
AE0210-168 3 4
AE0210-169 3 4
AE0210-170 3 4
AE0210-171 3 4
AE0210-172 3 4
AE0210-173 3 4
AE0210-174 3 4
AE0213-175 3 4
AE0213-176 3 4
AE0213-177 3 4
AE0213-178 3 4
AE0213-179 3 4
AE0213-180 3 4
AE0213-181 3 4
AE0213-182 3 4
AE0213-183 3 4
AE0213-186 3 4
AE0213-187 3 4
AE0213-190 3 4
AE0213-193 3 4
AE0213-194 3 4
AE0213-195 3 4
AE0213-196 3 4
AE0213-197 3 4
AE0213-198 4
AE0213-199 3 4
AE0213-200 3 4
AE0213-201 3 4
AE0213-202 3 4
AE0213-205 3 4
AE0213-206 3 4
AE0251-323 4 5
AE0251-325 3 4
AE0251-327 3 4
AE0251-329 3 4
AE0251-330 3 4
AE0251-331 3 4
AE0251-342 4 5
AE0251-343 4 5
AE0406-239 4
AE0406-254 4
AE0406-258 4
AE0406-259 4
AE0406-263 3 4
AE0406-264 4
AE0406-266 3 4
AE0406-271 3 4
AE0406-274 4
AE0406-278 3 4
AE0406-281 3 4
AE0406-286 3 4
AE0406-288 3 4
AE0406-289 3 4
AE0406-294 4
AE0406-298 3 4
Minneiska 3 4
NJ 303955 4
PRI 612-1 3 4
Arlet 3 4
Co-op 39 10 4
Pinova 3
Scired 3 4
Scifresh 4
0409-0025 4
0409-0026 4
0409-0027 4
0409-0031 4
0409-0033 4
0409-0047 4
G-14-050 3 4
G-14-052 3 4
G-14-054 3 4
G-14-055 3 4
G-14-056 3 4
G-14-057 3 4
G-14-059 3 4
G-14-060 3 4
G-14-061 3 4
G-14-062 3 4
G-14-064 3 4
G-14-065 3 4
G-14-069 3 4
G-14-067 3 4
G-14-068 3 4
G-14-071 3 4
G-14-073 3 4
G-14-074 3 4
G-14-075 3 4
G-14-076 3 4
G-14-077 3 4
G-14-078 3 4
G-14-080 3 4
G-09-232 4
G-09-233 4
G-09-234 4
G-09-235 4
G-09-236 4
G-09-237 4
G-09-238 4
G-09-239 4
G-09-240 4
G-09-241 4
G-09-242 4
G-09-243 4
G-09-245 4
G-09-246 4
G-09-258 4
G-09-259 4
G-09-260 4
G-09-261 4
G-09-262 4
G-09-263 4
G-09-264 4
G-09-265 4
G-09-266 4
G-09-267 4
G-09-268 4
0408-0021 4
Wijcik McIntosh 3 4
Beauty of Bath 6
Priam 10 3
Northern Spy 3 4
Co-op 15 3 5
MN 1702 5
WA 2 4
WA 5 4 5
Pitmaston Pineapple 3 4
0411-0011 4
0411-0017 3 4
0411-0023 4
AE0250-086 4 5
AE0250-087 3 4
AE0250-089 3 4
AE0250-090 4 5
AE0250-092 3 4
AE0250-093 4 5
AE0250-094 3 4
AE0250-095 4 5
Sonya 4
Co-op 38 4
AE0250-096 3 4
AE0250-327 3 4
Co-op 30 4
AE0211-036 3 4
G-07-039 10 7
G-07-041 10 4
BC-8S-27-43 4
AE0250-091 3 4
AE0250-097 3 4
AE0250-325 3 4
AE0250-326 10 4
AE0250-329 3 4
AE0250-333 10 4
AE0250-334 10 4
AE0250-335 3 4
AE0250-336 10 4
AE0250-338 3 4
AE0250-341 3 4
AE0211-038 3 4
AE0211-043 3 4
AE0211-045 3 4
AE0211-051 3 4
G-07-010 4
G-07-014 10 4
G-07-015 10 3
G-07-019 4
G-07-020 10 3
G-07-024 4
G-07-032 3 4
G-07-033 10 4
G-07-034 3 4
G-07-035 4
G-07-044 10 3
AE0211-053 4
AE0211-054 3 4
AE0250-088 3 4
AE0250-324 4
AE0250-328 4
AE0250-331 4
AE0250-332 3 4
AE0250-337 3 4
AE0250-339 4
Minnewashta 3 4
Autumn Crisp 10 4
G-14-066 3 4
Lu1-11-010 4
Lu1-11-013 4
Lu1-11-016 4
Lu1-11-017 4
Lu1-11-018 4
NJ 90 4
Lord Lambourne 4 7
Antonovka GH 4
Grimes Golden 3
Kidds Orange Red 4
Malus baccata Hansen #2 4 7
Malus baccata Jackii 4
Summerred 3
William's Pride 4
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-03-17Apple-RosBREED-3.9K-2019319.319.95
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Haplotypes
Marker 23456789101112131415161718192021222324252627
GDsnp01990-BAA-A--A--BAABA-BA---ABBB
RosBREEDSNP_SNP_CA_10105269_Lg3_MDP0000160005_MAF20_MDP0000160005_exon1-BBBBAA-B-BBAA--B----BBABB
RosBREEDSNP_SNP_GA_9960040_Lg3_01990_MAF10_1682867_exon2-BBABBBBBB---ABB---B-BABBA
RosBREEDSNP_SNP_GA_9966749_Lg3_01990_MAF10_266458_exon1BBBBBBBBA--BBBBBB--AAAABAB
Alignments
Feature NameTypeLocationAnalysis
Chr03 chromosome Chr03:8830744..9106588. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation