Mdo-HB-03-15

Haplotype Block Overview

Name	Mdo-HB-03-15
Species	Malus x domestica
Stock Haplotype	[view all 386]
Haplotype	[view all]

Publications


Year	Publication
2019	Vanderzande S, Howard NP, Cai L, Da Silva Linge C, Antanaviciute L, Bink MCAM, Kruisselbrink JW, Bassil N, Gasic K, Iezzoni A, Van de Weg E, Peace C. High-quality, genome-wide SNP genotypic data for pedigreed germplasm of the diploid outbreeding species apple, peach, and sweet cherry through a common workflow. PloS one. 2019; 14(6):e0210928.

Stock Haplotype

Name	Haplotype
Cox's Orange Pippin	4
Rome Beauty Law	13 4
Jonafree	4
Redfree	100 101
Spartan	13 14
Wagener	10 13
Worcester Pearmain	4 9
Tsugaru	4
Golden Delicious	4
Fuji	14 6
Empire	13 14
Gala	13 4
Honeycrisp	10 4
Elstar	4
Marshall McIntosh	10 13
Cripps Pink	4 9
Granny Smith	16 9
Jonathan	4 9
Ralls Janet	15 6
Delicious	13 14
Discovery	14 9
Prima	10 4
821	24
Fiesta	4 9
Ingrid Marie	10 4
Idared	10 9
Esopus Spitzenburg	4 9
Braeburn	10 14
Sansa	4 9
Lodi	10 6
James Grieve	4
Burgundy	13 24
Akane	9
Ambrosia	14 4
Aurora Golden Gala	13 4
Beacon	61 62
Ben Davis	10 13 27 4
Cameo	14 4
Chinook	13 4
Clivia	4 9
Co-op 17	14 4
Co-op 18	4
Dayton	10 4 9
Delblush	4
Delcorf	4
Delorgue	4 9
Dolgo	70
Geheimrat Dr. Oldenburg	3 9
Duchess of Oldenburg	5 6
Early Cortland	10 6
Empress	10 9
F2 26829-2-2	10 13
Fantazja	10 5
Fireside	5 9
Fortune	14 9
Frostbite	4 5
Ginger Gold	4 6
GMAL 4327	24 6
GMAL 4328	24 50
GMAL 4329	50 6
GMAL 4332	50 9
Goodland	13 9
Haralson	4 9
Honeygold	4 9
Hudson	10 14
Jersey Black	10 3
Jonamac	13 9
Keepsake	10 4
Kerr	70 9
Lady Williams	6 9
Liberty	10 9
Linda	13 5
Liveland Raspberry	4 76
Longfield	10 6
Macoun	10 13
Malinda	10 4
Mantet	9
Melrose	13 9
MN 1627	4 6
MN 1628	10 4
MN 1691	9
MN 1706	79 80
MN 1708	10 4
MN 1760	4 5
MN 1764	4 5
MN 1789	6 9
MN 1802	4 5
MN 1836	10 9
MN 1837	4 9
MN 1839	4 9
MN 1888	6 9
MN 1899	4 5
MN 1940	9
MN 2016	9
AA-44	4 9
Monroe	13 9
Montgomery	10 5
Nicola	4
NJ 53	10 66
Oriole	4 9
PRI 14-126	10 4
PRI 14-510	10 4
PRI 1661-2	13 14
PRI 54-12	13 9
Primula	4 86
Raritan	10 4
Regent	10 4
Rubin	4
Russian Seedling	102 14
Sawa	4 5
Sciros	13 4
Sharon	13 4
Silken	4
Wildung	13 5
Splendour	13 4
State Fair	9
NJ 55	10 4
Co-op 29	13 4
Sunrise	4 6
Sweet Sixteen	10 5
Topaz	4
Vista Bella	10
Wealthy	5 9
Winesap	12 13
Winter Banana	13 14
Yellow Newtown	13 6
Yellow Transparent	6 9
0407-0001	13 4
0409-0045	10 4
0410-0006	13 9
0410-0017	16 4
0414-0010	4
0414-0015	10 4
0414-0017	10 9
0414-0018	14 4
0414-0019	10 9
0415-0001	4
0415-0004	10 14
0415-0005	10 4
0415-0011	14 4
0415-0012	10 14
0415-0013	10 4
0415-0014	10 4
0415-0016	14 4
0415-0017	10 4
0415-0019	10 14
0415-0020	4
0415-0025	10 14
AE_HCxJonf-145	10 4
AE_HCXJonf-148	10 4
AE_HCxJonf-157	4
AE_HCXJonf-162	10 4
AE_HCXJonf-168	10 4
AE_HCxJonf-175	10 4
AE_HCxJonf-183	4
AE_HCxJonf-185	4
AE0118-237	10
AE0118-238	10
AE0118-239	10 4
AE0118-240	10 4
AE0118-243	10 4
AE0118-244	10 4
AE0118-245	10 4
AE0118-246	10 4
AE0118-249	10
AE0206-159	13 9
AE0206-160	13 9
AE0206-161	13 9
AE0206-162	4 9
AE0206-163	4 9
AE0206-164	4 9
AE0206-165	13 9
AE0206-167	13 9
AE0206-168	4 9
AE0206-169	13 9
AE0206-170	13 9
AE0210-146	4 50
AE0210-147	50 6
AE0210-149	6
AE0210-150	4 6
AE0210-151	6
AE0210-152	6 9
AE0210-153	4 6
AE0210-154	4 6
AE0210-157	4 6
AE0210-158	4 50
AE0210-159	50 6
AE0210-162	4 6
AE0210-163	4 6
AE0210-164	6
AE0210-165	4 50
AE0210-166	4 6
AE0210-168	4 50
AE0210-169	4 50
AE0210-170	6
AE0210-171	4 6
AE0210-172	6
AE0210-173	4 6
AE0210-174	6
AE0213-175	50 6
AE0213-176	50 6
AE0213-177	4 50
AE0213-178	50 6
AE0213-179	4 50
AE0213-180	4 50
AE0213-181	4 50
AE0213-182	4 50
AE0213-183	4 9
AE0213-186	4 9
AE0213-187	4 50
AE0213-190	50 6
AE0213-193	50 6
AE0213-194	50 6
AE0213-195	4 9
AE0213-196	4 50
AE0213-197	4 9
AE0213-198	16 4
AE0213-199	4 50
AE0213-200	4 9
AE0213-201	4 9
AE0213-202	4 9
AE0213-205	6 9
AE0213-206	6 9
AE0251-323	13 5
AE0251-325	10 4
AE0251-327	10 4
AE0251-329	10 4
AE0251-330	4 5
AE0251-331	10 13
AE0251-342	4 5
AE0251-343	4 5
AE0406-239	4
AE0406-254	10 4
AE0406-258	4
AE0406-259	4
AE0406-263	4
AE0406-264	10 4
AE0406-266	10 4
AE0406-271	4
AE0406-274	10 4
AE0406-278	4
AE0406-281	4
AE0406-286	10 4
AE0406-288	4
AE0406-289	4
AE0406-294	4
AE0406-298	4
Minneiska	4 9
PRI 612-1	14 4
Arlet	4 9
Co-op 39	92 93
Pinova	4 9
Scired	13 4
Scifresh	14 4
0409-0025	4
0409-0026	10 4
0409-0027	13 4
0409-0031	10 13
0409-0033	13 4
0409-0047	13 4
G-14-050	14 4
G-14-052	4
G-14-054	4 9
G-14-055	4 9
G-14-056	14 9
G-14-057	4
G-14-059	4 9
G-14-060	4 9
G-14-061	14 4
G-14-062	4 9
G-14-064	14 4
G-14-065	14 9
G-14-069	4
G-14-067	14 9
G-14-068	4
G-14-071	14 9
G-14-073	4 9
G-14-074	14 4
G-14-075	14 4
G-14-076	4
G-14-077	4
G-14-078	14 4
G-14-080	14 9
G-09-232	14 4
G-09-233	14 4
G-09-234	10 4
G-09-235	10 6
G-09-236	14 4
G-09-237	14 4
G-09-238	14 6
G-09-239	14 4
G-09-240	14 6
G-09-241	14 4
G-09-242	10 6
G-09-243	14 4
G-09-245	14 6
G-09-246	10 6
G-09-258	10 6
G-09-259	14 4
G-09-260	10 4
G-09-261	14 4
G-09-262	10 4
G-09-263	14 4
G-09-264	10 4
G-09-265	14 6
G-09-266	14 4
G-09-267	10 4
G-09-268	10 6
Wijcik McIntosh	10 13
Beauty of Bath	14 90
Priam	4 9
Northern Spy	10 9
Co-op 15	4 5
MN 1702	5
WA 2	13 4
WA 5	13 5
Pitmaston Pineapple	13 4
0411-0023	4 9
AE0250-086	4 5
AE0250-087	10 13
AE0250-089	10 4
AE0250-090	13 5
AE0250-092	10 4
AE0250-093	13 5
AE0250-094	10 4
AE0250-095	4 5
Sonya	14 4
Co-op 38	14 4
AE0250-096	9
AE0250-327	9
Co-op 30	14 4
AE0211-036	6 9
G-07-039	27 9
PRI 14-152	13 4
PRI 47-176	13 4
G-07-041	14 9
BC-8S-27-43	13 4
AE0250-091	10 6
AE0250-097	10 6
AE0250-325	10 6
AE0250-326	4 6
AE0250-329	10 6
AE0250-333	10 24
AE0250-334	10 24
AE0250-335	10 6
AE0250-336	24 4
AE0250-341	10 6
AE0211-038	50 6
AE0211-043	4 50
AE0211-051	24 4
G-07-010	16 4
G-07-014	16 9
G-07-019	16 4
G-07-020	9
G-07-024	16 4
G-07-032	4 9
G-07-033	16 9
G-07-034	4 9
G-07-035	16 4
G-07-044	9
AE0211-053	6 9
AE0211-054	6 9
AE0250-088	4 9
AE0250-324	4 9
AE0250-328	4 9
AE0250-331	4 9
AE0250-332	10 9
AE0250-337	10 9
AE0250-339	10 9
Minnewashta	9
Autumn Crisp	4 9
G-14-066	14 9
Lu1-11-010	10 6
Lu1-11-013	10 14
Lu1-11-016	10 6
Lu1-11-017	10 14
Lu1-11-018	10 14
NJ 90	10 14
Lord Lambourne	4
Antonovka GH	104 105
Grimes Golden	2 4
Kidds Orange Red	13 4
Malus baccata Hansen #2	109 16
Malus baccata Jackii	110 98
Summerred	111 9
William's Pride	10

Map Positions


Haplotype Block	Map Name	Linkage Group	Start	Stop
Mdo-HB-03-15	Apple-RosBREED-3.9K-2019	3	16.33	16.82

Projects


Project Name
RosBREED_Apple_CRS_Haplotype_2020

Haplotypes

Marker	2	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	111	112	113	114	115	116	117	118	119
RosBREEDSNP_SNP_AG_9099550_Lg3_RosCOS449_MAF20_MDP0000194114_exon8	-	-	A	B	A	-	-	B	A	-	-	A	A	-	A	B	A	A	A	A	A	-	A	-	-	A	A	A	B	-	-	-	A	A	A	B	B	B	-	B	B	A	A	A	-	-	A	-	A	A	-	B	A	A	A	-	B	A	A	A	B	-	-	-	A	A	-	-	A	B	-	-	A	-	-	B	A	B	A	B	A	A	A	-	-	B	A	A	A	A	A	A	-	-	A	A	A	A	A	A	A	A	A	A	-	-	A	A	A	A	B	B	A	-	-	A	-	-
RosBREEDSNP_SNP_AG_9121744_Lg3_RosCOS449_MAF10_491206_exon2	A	A	A	A	A	A	A	B	A	A	A	A	A	A	A	B	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	B	B	A	B	B	A	A	A	A	-	-	A	-	B	A	A	B	A	A	A	A	B	A	A	A	A	B	A	B	A	A	-	-	-	-	-	-	A	A	A	B	A	A	B	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	B	A	A	A	-	-	B	A	A	A	B	A	A	-	-	A	-	-
RosBREEDSNP_SNP_CT_9091637_Lg3_RosCOS449_MAF40_1667685_exon1	A	B	B	B	B	B	B	B	A	A	A	A	A	B	A	-	-	B	A	-	-	A	B	A	B	A	A	B	-	A	-	-	A	A	A	B	B	B	B	B	B	A	B	A	-	-	A	-	B	B	A	B	A	B	B	A	B	B	-	B	B	B	B	B	A	A	-	-	B	B	B	A	A	A	A	B	A	B	A	-	-	B	A	B	A	B	B	A	A	A	B	A	A	B	A	A	B	A	B	A	A	-	A	B	-	-	B	B	B	A	B	B	-	B	A	-	-	-
RosBREEDSNP_SNP_GT_9093756_Lg3_RosCOS449_MAF20_570407_exon1	B	B	B	B	B	B	B	B	A	B	B	B	B	B	A	B	A	B	A	B	A	B	B	B	B	A	B	B	B	B	B	B	B	B	B	B	B	B	B	B	B	B	-	-	-	-	A	-	B	B	A	B	B	B	B	A	B	B	B	B	B	B	B	B	A	A	B	A	B	B	B	A	A	A	A	B	B	A	B	-	-	B	A	B	A	B	B	A	A	B	B	B	A	B	A	B	A	B	A	B	B	B	A	B	-	-	B	B	A	B	B	B	B	-	-	-	-	-
RosBREEDSNP_SNP_TC_9101679_Lg3_RosCOS449_MAF30_519186_exon1	B	A	A	A	A	A	A	A	A	B	B	B	B	B	B	A	A	A	A	A	A	B	A	-	-	B	B	A	A	B	B	A	B	-	-	A	-	-	A	A	A	B	-	-	-	-	A	-	A	A	A	A	B	A	A	A	A	A	A	A	A	A	A	A	A	A	-	-	A	A	-	-	A	A	A	A	B	A	A	A	A	A	A	A	A	A	A	A	A	B	B	A	B	B	A	B	A	A	A	A	B	-	A	B	-	-	A	B	B	B	A	A	-	A	B	A	A	B
RosBREEDSNP_SNP_TC_9104035_Lg3_RosCOS449_MAF40_MDP0000739342_exon1	-	-	A	B	B	B	A	B	A	B	A	B	A	-	A	B	A	A	A	A	A	B	A	-	-	A	-	-	B	A	A	B	B	B	A	B	B	B	B	-	-	-	-	-	-	-	A	-	B	-	-	-	-	-	-	A	B	A	A	B	A	-	-	-	-	-	-	-	A	B	-	-	A	-	-	-	-	B	A	B	A	-	-	-	-	B	A	A	B	A	B	A	A	A	B	A	A	A	A	A	A	-	A	A	B	A	A	A	A	B	B	B	A	-	-	A	-	-
RosBREEDSNP_SNP_TC_9133355_Lg3_RosCOS449_MAF10_1679737_exon1	-	-	A	A	A	A	A	A	B	A	A	A	A	-	A	A	B	A	B	A	B	A	A	A	A	A	-	-	A	A	A	A	A	A	A	A	A	A	A	A	A	A	-	-	-	-	-	A	A	A	-	-	-	A	A	B	-	-	A	A	A	-	A	A	A	B	A	B	A	A	-	-	-	B	A	A	A	B	A	A	A	-	-	-	-	-	-	A	-	-	A	A	A	A	A	B	A	B	B	A	A	A	A	A	-	-	A	A	A	-	-	A	A	-	-	-	-	-
RosBREEDSNP_SNP_TG_9067048_Lg3_RosCOS449_MAF50_1654891_exon2	-	-	A	null	null	null	A	null	null	-	-	null	null	-	null	null	null	-	-	-	-	null	null	-	-	A	-	-	null	null	null	null	-	null	null	-	null	null	null	null	null	null	A	null	A	null	null	-	null	-	-	null	null	A	null	null	-	-	A	A	null	-	null	null	null	null	A	null	null	null	A	null	-	null	null	-	-	null	null	null	A	A	null	A	null	null	A	A	null	null	A	null	null	null	null	null	null	A	null	A	null	-	null	null	-	-	null	A	null	null	null	-	A	-	-	-	-	-

Alignments

Feature Name	Type	Location	Analysis
Chr03	chromosome	Chr03:7743490..7814615.	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation