Mdo-HB-03-12a

Haplotype Block Overview
Name Mdo-HB-03-12a
Species Malus x domestica
Stock Haplotype [view all 432]
Haplotype [view all]
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 5
Rome Beauty Law 4
Jonafree 4 5
Redfree 18 41
Spartan 4
Wagener 4 8
Worcester Pearmain 4 5
Tsugaru 5
Golden Delicious 4 5
Fuji 4 5
Empire 4
Gala 5 8
Honeycrisp 5
Elstar 5
Marshall McIntosh 4
Cripps Pink 4 8
Granny Smith 12 8
Jonathan 4 5
Ralls Janet 5
Delicious 4 8
Discovery 15 4
Prima 4
821 4
Fiesta 4 5
Ingrid Marie 5 8
Idared 4 8
Esopus Spitzenburg 5 8
Braeburn 4 8
Sansa 4 5
Lodi 17 4
James Grieve 5 8
Cripps Red 4 8
Burgundy 17 4
Akane 4
Ambrosia 4 5
Aurora Golden Gala 5 8
Beacon 18 27
Ben Davis 4 5 8
Cameo 4 5
Chinook 4 8
Clivia 4 5
Co-op 17 4
Co-op 18 4 5
Dayton 4 5
Delblush 4 5
Delcorf 4
Delorgue 4
Dolgo 13 17
Geheimrat Dr. Oldenburg 4 5
Duchess of Oldenburg 5 6
Early Cortland 17 4 8
Empress 4
F2 26829-2-2 4 8
Fantazja 4 6
Fireside 4 6
Fortune 4 5
Frostbite 6 8
Ginger Gold 17 5
GMAL 4327 4 5
GMAL 4328 4
GMAL 4329 4 6
GMAL 4332 25 4
Goodland 4 6
Haralson 4 5
Honeygold 4
Hudson 4 5
Jersey Black 11 8
Jonamac 4
Keepsake 5 8
Kerr 17 4
Lady Williams 4 8
Liberty 4 8
Linda 6 8
Liveland Raspberry 5 8
Longfield 36 4
Macoun 4 8
Malinda 5 8
Melba 4 8
Melrose 4 8
MN 1627 5
MN 1628 5 8
MN 1691 4 6
MN 1706 4
MN 1708 5
MN 1760 36 4
MN 1764 6 8
MN 1789 4 5
MN 1802 6 8
MN 1836 4 5
MN 1837 4 5
MN 1839 5
MN 1888 4 5
MN 1899 4 6
MN 1940 4
MN 2016 4
AA-44 4 5
Monroe 4
Montgomery 18 4
Nicola 4 5
NJ 31 4
NJ 53 4
Oriole 4 5
PCF-3-120 4 5
PRI 14-126 4 8
PRI 14-510 4 8
PRI 1661-2 4
PRI 54-12 4
PRI 855-102 5
Primula 8
Raritan 18 41
Regent 4 5
Russian Seedling 25 4
Sawa 6 8
Sciros 4 8
Sharon 4 8
Silken 4 5
Wildung 4 6
Splendour 4 8
State Fair 4
NJ 55 4 5
Co-op 29 4 5
Sunrise 5
Sweet Sixteen 5 6
Topaz 4 5
Vista Bella 4
Wealthy 4 6
Winesap 10 8
Winter Banana 5
Yellow Newtown 4 5
Yellow Transparent 17 4
0407-0001 4 8
0407-0005 4 8
0407-0006 4 5
0407-0007 4 8
0407-0008 4 8
0408-0003 5
0408-0004 4 8
0408-0005 4 8
0408-0007 4 8
0408-0008 4 8
0408-0010 4 8
0408-0011 5
0408-0014 5
0408-0015 5
0409-0022 5
0409-0024 5
0409-0028 5
0409-0030 5 8
0409-0032 5
0409-0035 5 8
0409-0036 5
0409-0038 5 8
0409-0039 5 8
0409-0040 5 8
0409-0043 5
0409-0045 5
0410-0002 12 8
0410-0003 5 8
0410-0005 12 5
0410-0006 8
0410-0010 8
0410-0011 8
0410-0012 12 8
0410-0013 5 8
0410-0015 12 8
0410-0017 12 5
0410-0018 8
0414-0010 4 5
0414-0015 4 5
0414-0017 4 5
0414-0018 4 5
0414-0019 4 5
0414-0020 5
0414-0021 4 5
0415-0001 5
0415-0004 4 5
0415-0005 5
0415-0011 4 5
0415-0012 4 5
0415-0013 5
0415-0014 5
0415-0016 4 5
0415-0017 5
0415-0019 4 5
0415-0020 5
0415-0025 4 5
AE_HCxJonf-145 4 5
AE_HCXJonf-148 5
AE_HCxJonf-157 5
AE_HCXJonf-162 5
AE_HCXJonf-168 4 5
AE_HCxJonf-175 4 5
AE_HCxJonf-183 5
AE_HCxJonf-185 5
AE0118-237 4 5
AE0118-238 4 5
AE0118-239 5
AE0118-240 5
AE0118-243 4 5
AE0118-244 4 5
AE0118-245 4 5
AE0118-246 4 5
AE0118-249 4 5
AE0206-159 4 8
AE0206-160 4 8
AE0206-161 6 8
AE0206-162 4 5
AE0206-163 5 6
AE0206-164 5 6
AE0206-165 5 6
AE0206-167 6 8
AE0206-168 5 6
AE0206-169 4 5
AE0206-170 6 8
AE0210-146 4 5
AE0210-147 4 5
AE0210-149 4 5
AE0210-150 4 5
AE0210-151 5 6
AE0210-152 5 6
AE0210-153 5 6
AE0210-154 5 6
AE0210-157 5 6
AE0210-158 4 5
AE0210-159 4 5
AE0210-162 4 5
AE0210-163 5 6
AE0210-164 5 6
AE0210-165 4 5
AE0210-166 5 6
AE0210-168 4 5
AE0210-169 4 5
AE0210-170 5 6
AE0210-171 5 6
AE0210-172 4 5
AE0210-173 5 6
AE0210-174 5 6
AE0213-175 17 4
AE0213-176 17 4
AE0213-177 4 5
AE0213-178 17 4
AE0213-179 4 5
AE0213-180 4 5
AE0213-181 4 5
AE0213-182 4 5
AE0213-183 25 5
AE0213-186 25 5
AE0213-187 17 4
AE0213-190 17 4
AE0213-193 17 4
AE0213-194 17 4
AE0213-195 25 5
AE0213-196 4 5
AE0213-197 25 5
AE0213-198 4 5
AE0213-199 4 5
AE0213-200 25 5
AE0213-201 25 5
AE0213-202 25 5
AE0213-205 17 25
AE0213-206 17 25
AE0251-323 6 8
AE0251-325 5
AE0251-327 5
AE0251-329 5
AE0251-330 5 6
AE0251-331 5 8
AE0251-342 5 6
AE0251-343 5 6
AE0406-239 5
AE0406-254 5
AE0406-258 5
AE0406-259 5
AE0406-263 4 5
AE0406-264 5
AE0406-266 4 5
AE0406-271 4 5
AE0406-274 5
AE0406-278 4 5
AE0406-281 4 5
AE0406-286 4 5
AE0406-288 4 5
AE0406-289 4 5
AE0406-294 5
AE0406-298 4 5
Minneiska 5 6
NJ 303955 4
PRI 612-1 4
Arlet 4
Co-op 39 4 5
Pinova 4
Scired 4 8
Scifresh 4 5
0409-0025 5
0409-0026 5
0409-0027 5 8
0409-0031 5 8
0409-0033 5 8
0409-0047 5 8
G-14-050 4
G-14-052 4 5
G-14-054 4 5
G-14-055 4 5
G-14-056 4
G-14-057 4 5
G-14-059 4
G-14-060 4 5
G-14-061 4
G-14-062 4 5
G-14-064 4
G-14-065 4 5
G-14-069 4 5
G-14-067 4
G-14-068 4 5
G-14-071 4
G-14-073 4
G-14-074 4
G-14-075 4
G-14-076 4 5
G-14-077 4 5
G-14-078 4
G-14-080 4
G-09-232 4 5
G-09-233 4 5
G-09-234 5 8
G-09-235 17 8
G-09-236 4 5
G-09-237 4 5
G-09-238 17 4
G-09-239 4 5
G-09-240 17 4
G-09-241 4 5
G-09-242 17 8
G-09-243 4 5
G-09-245 17 4
G-09-246 17 8
G-09-258 5 8
G-09-259 4 5
G-09-260 17 8
G-09-261 17 4
G-09-262 5 8
G-09-263 4 5
G-09-264 17 8
G-09-265 17 4
G-09-266 4 5
G-09-267 5 8
G-09-268 17 8
0408-0021 4 8
Wijcik McIntosh 4
Beauty of Bath 15 19
Priam 4 8
Northern Spy 4 5
Co-op 15 4 6
MN 1702 6
WA 2 5 8
WA 5 6 8
Pitmaston Pineapple 5 8
0411-0011 4 5
0411-0017 4
0411-0023 4 5
AE0250-086 5 6
AE0250-087 5 8
AE0250-089 5
AE0250-090 6 8
AE0250-092 5
AE0250-093 6 8
AE0250-094 5
AE0250-095 5
Sonya 4 5
Co-op 38 4 5
AE0250-096 4 6
AE0250-327 4 6
Co-op 30 4 5
Jonagrimes 4 6
AE0211-036 17 4
G-07-039 4
PRI 14-152 4
PRI 47-176 4 5
G-07-041 5
BC-8S-27-43 5 8
AE0250-091 5
AE0250-097 5
AE0250-325 5
AE0250-326 5
AE0250-329 5
AE0250-333 4 5
AE0250-334 4 5
AE0250-335 5
AE0250-336 4 5
AE0250-338 4 5
AE0250-341 5
AE0211-038 17 4
AE0211-043 4 5
AE0211-045 17 4
AE0211-051 4 5
G-07-010 4 8
G-07-014 12 4
G-07-015 4 8
G-07-019 12 5
G-07-020 4 8
G-07-024 5 8
G-07-032 5 8
G-07-033 12 4
G-07-034 5 8
G-07-035 12 5
G-07-044 4 8
AE0211-053 17 4
AE0211-054 17 6
AE0250-088 5 6
AE0250-324 4 5
AE0250-328 4 5
AE0250-331 4 5
AE0250-332 5 6
AE0250-337 5 6
AE0250-339 4 5
Minnewashta 4 6
Autumn Crisp 4 5
G-14-066 4
Lu1-11-010 4 5
Lu1-11-013 4
Lu1-11-016 4 5
Lu1-11-017 4
Lu1-11-018 4
NJ 90 4
Lord Lambourne 5 8
Antonovka GH 12 25
Grimes Golden 2 4
Kidds Orange Red 5 8
Malus baccata Hansen #2 4
Malus baccata Jackii 4
Summerred 4
William's Pride 4
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-03-12aApple-RosBREED-3.9K-2019310.0810.08
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Haplotypes
Marker 234567891011121314151617181920212223242526272829303132333435363738394041424344454647
GDsnp01493BBBAB-BBBABBBBBBBB---BBBAAB--ABA--BAAABABBAABB
RosBREEDSNP_SNP_AG_7171067_Lg3_01493_MAF50_357233_exon1BBBAB-AABABBB-ABA---AAABABBBA--ABAAA-ABB-BA--B
RosBREEDSNP_SNP_AG_7180717_Lg3_01493_MAF30_1637713_exon3--AAAABBA-A--ABBAB--A--BAA-AB---ABBAA--A-----B
RosBREEDSNP_SNP_CT_7178316_Lg3_01493_MAF30_1666882_exon4ABBBBBAABBABBB-ABA-BBAABBBABABABBAAAA--B-----A
RosBREEDSNP_SNP_GA_7168817_Lg3_01493_MAF10_1645648_exon1--BBABB---BBABBBBBB-B-BB-AB----BBBABBBBBB----A
Alignments
Feature NameTypeLocationAnalysis
Chr03 chromosome Chr03:5842578..5854545. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation