Mdo-HB-03-12

Haplotype Block Overview
Name Mdo-HB-03-12
Species Malus x domestica
Stock Haplotype [view all 423]
Haplotype [view all]
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 3
Rome Beauty Law 15 2
Jonafree 2 3
Redfree 23 3
Spartan 2 9
Wagener 15 5
Worcester Pearmain 3 6
Tsugaru 3
Golden Delicious 2 3
Fuji 3 9
Empire 2 9
Gala 3 5
Honeycrisp 3
Elstar 3
Marshall McIntosh 2 6
Cripps Pink 2 5
Granny Smith 5
Jonathan 15 3
Ralls Janet 3
Delicious 5 9
Discovery 15 6
Prima 2 6
821 13 14
Fiesta 15 3
Ingrid Marie 3 5
Idared 15 5
Esopus Spitzenburg 3 5
Braeburn 13 9
Sansa 15 3
Lodi 15 23
James Grieve 3 5
Cripps Red 2 5
Burgundy 15 6
Akane 15 6
Ambrosia 3 9
Aurora Golden Gala 3 5
Beacon 2 3
Ben Davis 13 3 5 9
Cameo 3 9
Chinook 2 5
Clivia 3 6
Co-op 17 2 9
Co-op 18 2 3
Dayton 15 2 3 6
Delblush 2 3
Delcorf 2
Delorgue 15 2
Dolgo 42 6
Geheimrat Dr. Oldenburg 3 6
Duchess of Oldenburg 2 3
Early Cortland 13 23 6
Empress 15 6
F2 26829-2-2 13 15
Fantazja 2 6
Fireside 2 6
Fortune 6 9
Frostbite 2 5
Ginger Gold 23 3
GMAL 4327 15 3
GMAL 4328 24 6
GMAL 4329 2 3
GMAL 4332 2 6
Goodland 2
Haralson 15 3
Honeygold 15 2
Hudson 3 9
Jersey Black 10 13
Jonamac 15 2
Keepsake 3 5
Kerr 15 6
Lady Williams 5 6
Liberty 13 15
Linda 13 2
Liveland Raspberry 3 43
Longfield 13 16
Macoun 13 6
Malinda 3 5
Mantet 6
Melba 2 43
Melrose 15 5
MN 1627 3
MN 1628 3 5
MN 1691 2 6
MN 1706 2 50
MN 1708 3
MN 1760 2 5
MN 1764 2 5
MN 1789 3 6
MN 1802 2 5
MN 1836 3 6
MN 1837 3 6
MN 1839 3
MN 1888 3 6
MN 1899 2 6
MN 2016 15 2
AA-44 15 3
Montgomery 13 15
Nicola 2 3
NJ 31 2
NJ 53 6
Oriole 15 3
PRI 14-126 13 2
PRI 14-510 2
PRI 1661-2 2 9
PRI 54-12 15
PRI 855-102 3
Primula 13
Raritan 13 60
Regent 3 6
Russian Seedling 2
Sawa 13 2
Sciros 2 5
Sharon 2 5
Silken 2 3
Wildung 2
Splendour 2 5
State Fair 15 6
NJ 55 3 6
Co-op 29 3 6
Sunrise 3
Sweet Sixteen 2 3
Topaz 2 3
Vista Bella 6
Wealthy 15 2
Winesap 5 8
Winter Banana 14 2
Yellow Newtown 13 14
Yellow Transparent 14 23
0407-0001 2 5
0407-0005 15 5
0407-0006 2 3
0407-0007 2 5
0407-0008 15 5
0408-0003 3
0408-0004 5 9
0408-0005 5 9
0408-0007 9
0408-0008 5 9
0408-0010 5 9
0408-0011 3
0408-0014 3
0408-0015 3
0409-0022 3
0409-0024 3
0409-0028 3
0409-0030 3 5
0409-0032 3
0409-0035 3 5
0409-0036 3
0409-0038 3 5
0409-0039 3 5
0409-0040 3 5
0409-0043 3
0409-0045 3
0410-0002 5
0410-0003 5
0410-0005 3 5
0410-0006 5
0410-0010 5
0410-0011 5
0410-0012 5
0410-0013 3 5
0410-0015 5
0410-0017 3 5
0410-0018 5
0414-0010 2 3
0414-0015 15 3
0414-0017 15 3
0414-0018 3 9
0414-0019 15 3
0414-0020 3
0414-0021 15 3
0415-0001 3
0415-0004 3 9
0415-0005 3
0415-0011 3 9
0415-0012 3 9
0415-0013 3
0415-0014 3
0415-0016 3 9
0415-0017 3
0415-0019 3 9
0415-0020 3
0415-0025 3 9
AE_HCxJonf-145 2 3
AE_HCXJonf-148 3
AE_HCxJonf-157 3
AE_HCXJonf-162 3
AE_HCXJonf-168 3 6
AE_HCxJonf-175 2 3
AE_HCxJonf-183 3
AE_HCxJonf-185 3
AE0118-237 3 6
AE0118-238 3 6
AE0118-239 3
AE0118-240 3
AE0118-243 3 6
AE0118-244 3 6
AE0118-245 3 6
AE0118-246 3 6
AE0118-249 3 6
AE0206-159 15 5
AE0206-160 15 5
AE0206-161 2 5
AE0206-162 15 3
AE0206-163 2 3
AE0206-164 2 3
AE0206-165 2 3
AE0206-167 2 5
AE0206-168 2 3
AE0206-169 15 3
AE0206-170 2 5
AE0210-146 3
AE0210-147 3
AE0210-149 3
AE0210-150 3
AE0210-151 2 3
AE0210-152 2 3
AE0210-153 2 3
AE0210-154 2 3
AE0210-157 2 3
AE0210-158 3
AE0210-159 3
AE0210-162 3
AE0210-163 2 3
AE0210-164 2 3
AE0210-165 3
AE0210-166 2 3
AE0210-168 3
AE0210-169 3
AE0210-170 2 3
AE0210-171 2 3
AE0210-172 3
AE0210-173 2 3
AE0210-174 2 3
AE0213-175 23 6
AE0213-176 23 6
AE0213-177 3 6
AE0213-178 23 6
AE0213-179 3 6
AE0213-180 3 6
AE0213-181 3 6
AE0213-182 3 6
AE0213-183 2 3
AE0213-186 2 3
AE0213-187 23 6
AE0213-190 23 6
AE0213-193 23 6
AE0213-194 23 6
AE0213-195 2 3
AE0213-196 3 6
AE0213-197 2 3
AE0213-198 15 3
AE0213-199 3 6
AE0213-200 2 3
AE0213-201 2 3
AE0213-202 2 3
AE0213-205 2 23
AE0213-206 2 23
AE0251-323 2 5
AE0251-325 3
AE0251-327 3
AE0251-329 3
AE0251-330 2 3
AE0251-331 3 5
AE0251-342 2 3
AE0251-343 2 3
AE0406-239 3
AE0406-254 3
AE0406-258 3
AE0406-259 3
AE0406-263 2 3
AE0406-264 3
AE0406-266 2 3
AE0406-271 2 3
AE0406-274 3
AE0406-278 2 3
AE0406-281 2 3
AE0406-286 2 3
AE0406-288 2 3
AE0406-289 2 3
AE0406-294 3
AE0406-298 2 3
Minneiska 2 3
NJ 303955 6
PRI 612-1 2 9
Arlet 15 2
Co-op 39 2 24
Pinova 2 6
Scired 2 5
Scifresh 3 9
0409-0025 3
0409-0026 3
0409-0027 3 5
0409-0031 3 5
0409-0033 3 5
0409-0047 3 5
G-14-050 2 9
G-14-052 2 3
G-14-054 3 6
G-14-055 3 6
G-14-056 6 9
G-14-057 2 3
G-14-059 6 9
G-14-060 3 6
G-14-061 2 9
G-14-062 3 6
G-14-064 2 9
G-14-065 3 6
G-14-069 2 3
G-14-067 6 9
G-14-068 2 3
G-14-071 6 9
G-14-073 6 9
G-14-074 2 9
G-14-075 2 9
G-14-076 2 3
G-14-077 2 3
G-14-078 2 9
G-14-080 2 9
G-09-232 3 9
G-09-234 13 3
G-09-235 13 23
G-09-236 3 9
G-09-237 3 9
G-09-238 23 9
G-09-239 3 9
G-09-241 3 9
G-09-242 13 23
G-09-243 3 9
G-09-245 23 9
G-09-246 13 23
G-09-258 13 3
G-09-259 3 9
G-09-260 13 23
G-09-261 23 9
G-09-262 13 3
G-09-263 3 9
G-09-264 13 23
G-09-265 23 9
G-09-266 3 9
G-09-267 13 3
G-09-268 13 23
0408-0021 5 9
Wijcik McIntosh 14 25
Beauty of Bath 15 52
Priam 13 15
Northern Spy 3 6
Co-op 15 2
MN 1702 2
WA 2 3 5
WA 5 2 5
Pitmaston Pineapple 3 5
0411-0011 15 3
0411-0017 2 9
0411-0023 15 3
AE0250-086 2 3
AE0250-087 3 5
AE0250-089 3
AE0250-090 2 5
AE0250-092 3
AE0250-093 2 5
AE0250-094 3
AE0250-095 3
Sonya 3 9
Co-op 38 3 9
AE0250-096 15 2
AE0250-327 15 2
Co-op 30 3 9
AE0211-036 14 23
G-07-039 15 56
G-07-041 3
BC-8S-27-43 3 5
AE0250-091 3
AE0250-097 3
AE0250-325 3
AE0250-326 3
AE0250-329 3
AE0250-333 15 3
AE0250-334 15 3
AE0250-335 3
AE0250-336 15 3
AE0250-338 15 3
AE0250-341 3
AE0211-038 23 6
AE0211-043 3 6
AE0211-045 23 24
AE0211-051 24 3
G-07-010 15 5
G-07-014 15 5
G-07-015 15 5
G-07-019 3 5
G-07-020 15 5
G-07-024 3 5
G-07-032 3 5
G-07-033 15 5
G-07-034 3 5
G-07-035 3 5
G-07-044 15 5
AE0211-053 15 23
AE0211-054 2 23
AE0250-088 2 3
AE0250-324 15 3
AE0250-328 15 3
AE0250-331 15 3
AE0250-332 2 3
AE0250-337 2 3
AE0250-339 15 3
Minnewashta 15 2
Autumn Crisp 15 3
G-14-066 6 9
Lu1-11-010 3 6
Lu1-11-013 6 9
Lu1-11-016 3 6
Lu1-11-017 6 9
Lu1-11-018 6 9
NJ 90 6 9
Lord Lambourne 3 5
Antonovka GH 13 14
Kidds Orange Red 3 5
Malus baccata Hansen #2 58 59
Malus baccata Jackii 62 63
William's Pride 6
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-03-12Apple-RosBREED-3.9K-201939.5210.08
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Haplotypes
Marker 23456789101112131415161718192021222324252627282930313233343536373839404142434445464748495051525354555657585960616263646566
RosBREEDSNP_SNP_AG_7146440_Lg3_01493_MAF20_MDP0000315272_exon4AAABBBAAAAABAAA--BB-ABAB-------ABABA--B-AB-ABAAABBB---BABAA-BBABB
RosBREEDSNP_SNP_CT_7138274_Lg3_01493_MAF10_MDP0000137959_exon3BBBBA--A---BABBBABBBBABBABB--AA--BAB--ABAA---BB-ABBABBAA--ABBBBAB
RosBREEDSNP_SNP_CT_9987791_Lg9_02031_MAF20_1656683_exon2BBBABABB---BBBABB-ABBABBABB-BABB-B--BBB--------BBBBBBABBBBA-ABBBA
RosBREEDSNP_SNP_GA_7151129_Lg3_01493_MAF50_163326_exon3AB-BBBAA---BBAAAABABABBA-----BBB----BA-----ABB-AB-B---A-BBB---BAB
RosBREEDSNP_SNP_TC_7157009_Lg3_01493_MAF20_1685346_exon2AAAAAAAA-BAAABAAAAAA-ABAAB-AAAAB----AAA-AAB--AABB--BAAAAAAAAAA--B
Alignments
Feature NameTypeLocationAnalysis
Chr03 chromosome Chr03:5591798..5830685. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation