Mdo-HB-03-11a

Haplotype Block Overview
Name Mdo-HB-03-11a
Species Malus x domestica
Stock Haplotype [view all 418]
Haplotype [view all]
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 5
Rome Beauty Law 4
Jonafree 4 5
Redfree 14 5
Spartan 12 14
Wagener 14 21
Worcester Pearmain 5 9
Tsugaru 5
Golden Delicious 4 5
Fuji 12 5
Empire 12 14
Gala 5 8
Honeycrisp 5
Elstar 5
Marshall McIntosh 14 9
Cripps Pink 14 4
Granny Smith 13 14
Jonathan 5 9
Ralls Janet 5
Delicious 12 8
Discovery 47 9
Prima 14 4
821 5
Fiesta 5 9
Ingrid Marie 14 5
Idared 14 9
Esopus Spitzenburg 14 5
Braeburn 12 13
Sansa 5 9
Lodi 4 8
James Grieve 14 5
Cripps Red 14 4
Burgundy 4 9
Akane 9
Ambrosia 12 5
Aurora Golden Gala 5 8
Beacon 36 37
Ben Davis 12 5 8
Chinook 4 8
Clivia 5 9
Co-op 17 12 4
Co-op 18 4 5
Dayton 14 4 9
Delblush 4 5
Delcorf 4
Delorgue 4 9
Dolgo 4 40
Geheimrat Dr. Oldenburg 5 9
Duchess of Oldenburg 5 6
Early Cortland 5 8 9
F2 26829-2-2 4 5
Fantazja 6 9
Fireside 6 9
Fortune 12 13
Frostbite 6 8
Ginger Gold 5 8
GMAL 4327 4 5
GMAL 4328 12
GMAL 4329 12 6
GMAL 4332 12 4
Haralson 5 9
Honeygold 4 9
Hudson 12 5
Jersey Black 5
Jonamac 14 9
Keepsake 5 8
Kerr 4 9
Lady Williams 14 8
Liberty 5 9
Linda 36 6
Longfield 45 56
Macoun 5 9
Malinda 14 5
Melba 14 5
Melrose 8 9
MN 1627 5
MN 1628 5 8
MN 1691 6 9
MN 1706 16
MN 1708 5
MN 1760 4 43
MN 1764 6 8
MN 1789 5 9
MN 1802 6 8
MN 1836 5 9
MN 1837 5 9
MN 1839 5
MN 1888 5 9
MN 1899 6 9
MN 1940 9
MN 2016 4 9
AA-44 5 9
Monroe 4 9
Montgomery 4 5
Nicola 4 5
NJ 53 14 9
Oriole 5 9
PRI 14-126 4 5
PRI 14-510 4 5
PRI 1661-2 12 14
PRI 54-12 4 9
PRI 855-102 5
Primula 5
Raritan 14 5
Regent 5 9
Russian Seedling 33 4
Sawa 5 6
Sciros 4 8
Sharon 14 8
Silken 4 5
Wildung 14 6
Splendour 4 8
State Fair 9
NJ 55 5 9
Co-op 29 5 9
Sunrise 5
Sweet Sixteen 5 6
Topaz 4 5
Vanda 4
Vista Bella 14 9
Wealthy 6 9
Winesap 11 8
Winter Banana 36 4
Yellow Newtown 4 52
Yellow Transparent 5 8
0407-0001 4 8
0407-0005 8 9
0407-0006 4 5
0407-0007 4 8
0407-0008 8 9
0408-0003 5
0408-0004 12 8
0408-0005 12 8
0408-0007 12 5
0408-0008 12 8
0408-0010 12 8
0408-0011 5
0408-0014 5
0408-0015 5
0409-0022 5
0409-0024 5
0409-0028 5
0409-0030 5 8
0409-0032 5 8
0409-0035 5 8
0409-0036 5
0409-0038 5 8
0409-0039 5 8
0409-0040 5 8
0409-0043 5
0409-0045 5
0410-0002 13 8
0410-0003 14 8
0410-0005 13 5
0410-0006 14 8
0410-0010 14 8
0410-0011 14 8
0410-0012 13 8
0410-0013 14 5
0410-0015 13 8
0410-0017 13 5
0410-0018 14 8
0414-0010 4 5
0414-0015 5 9
0414-0017 5 9
0414-0018 12 5
0414-0019 5 9
0414-0020 5
0414-0021 5 9
0415-0001 5
0415-0004 12 5
0415-0005 5
0415-0011 12 5
0415-0012 12 5
0415-0013 5
0415-0014 5
0415-0016 12 5
0415-0017 5
0415-0019 12 5
0415-0020 5
0415-0025 12 5
AE_HCxJonf-145 4 5
AE_HCXJonf-148 5
AE_HCXJonf-162 4 5
AE_HCXJonf-168 5 9
AE_HCxJonf-175 4 5
AE_HCxJonf-183 5
AE_HCxJonf-185 5
AE0118-237 5 9
AE0118-238 5 9
AE0118-239 5
AE0118-240 5
AE0118-243 5 9
AE0118-244 5 9
AE0118-245 5 9
AE0118-246 5 9
AE0118-249 5 9
AE0206-159 8 9
AE0206-160 8 9
AE0206-161 6 8
AE0206-162 5 9
AE0206-163 5 6
AE0206-164 5 9
AE0206-165 5 6
AE0206-167 6 8
AE0206-168 5 6
AE0206-169 5 9
AE0206-170 6 8
AE0210-146 5 6
AE0210-147 12 5
AE0210-149 12 5
AE0210-150 12 5
AE0210-151 5 6
AE0210-152 5 6
AE0210-153 5 6
AE0210-154 5 6
AE0210-157 5 6
AE0210-158 12 5
AE0210-159 12 5
AE0210-162 12 5
AE0210-163 5 6
AE0210-164 5 6
AE0210-165 12 5
AE0210-166 5 6
AE0210-168 12 5
AE0210-169 12 5
AE0210-170 5 6
AE0210-171 5 6
AE0210-172 12 5
AE0210-173 5 6
AE0210-174 5 6
AE0213-175 12 8
AE0213-176 12 8
AE0213-177 12 5
AE0213-178 12 8
AE0213-179 12 5
AE0213-180 12 5
AE0213-181 12 5
AE0213-182 12 5
AE0213-183 4 5
AE0213-186 4 5
AE0213-187 12 8
AE0213-190 12 8
AE0213-193 12 8
AE0213-194 12 8
AE0213-195 4 5
AE0213-196 12 5
AE0213-197 4 5
AE0213-198 4 5
AE0213-199 12 5
AE0213-200 4 5
AE0213-201 4 5
AE0213-202 4 5
AE0213-205 4 8
AE0213-206 4 8
AE0251-323 6 8
AE0251-325 5
AE0251-327 5
AE0251-329 5
AE0251-330 5 6
AE0251-331 5 8
AE0251-342 5 6
AE0251-343 5 6
AE0406-239 5
AE0406-254 5
AE0406-258 5
AE0406-259 5
AE0406-263 4 5
AE0406-264 5
AE0406-266 4 5
AE0406-271 4 5
AE0406-274 5
AE0406-278 4 5
AE0406-281 4 5
AE0406-286 4 5
AE0406-288 4 5
AE0406-289 4 5
AE0406-294 5
AE0406-298 4 5
Minneiska 5 6
PRI 612-1 12 4
Arlet 4 9
Co-op 39 16
Pinova 5 9
Scired 4 8
Scifresh 12 5
0409-0025 5
0409-0026 5
0409-0027 5 8
0409-0031 5 8
0409-0033 5 8
0409-0047 5 8
G-14-050 12 5
G-14-052 5
G-14-056 12 9
G-14-057 5
G-14-059 12 9
G-14-060 5 9
G-14-061 12 5
G-14-062 5 9
G-14-064 12 5
G-14-065 5 9
G-14-069 5
G-14-067 12 9
G-14-068 5
G-14-071 12 9
G-14-073 12 9
G-14-074 12 5
G-14-075 5
G-14-076 5
G-14-077 5
G-14-078 12 5
G-14-080 12 5
G-09-232 12 5
G-09-233 13 5
G-09-234 13 5
G-09-235 13 8
G-09-237 12 5
G-09-238 12 8
G-09-239 12 5
G-09-240 12 5
G-09-241 13 5
G-09-242 13 8
G-09-243 12 5
G-09-245 12 8
G-09-246 13 8
G-09-258 13 5
G-09-259 12 5
G-09-260 13 8
G-09-261 12 8
G-09-262 13 5
G-09-263 12 5
G-09-264 13 8
G-09-265 12 5
G-09-266 12 5
G-09-267 13 5
G-09-268 13 8
0408-0021 12 8
Wijcik McIntosh 47 51
Beauty of Bath 47 8
Priam 5 9
Northern Spy 5 9
Co-op 15 4 6
MN 1702 6
WA 2 5 8
WA 5 6 8
Pitmaston Pineapple 14 5
0411-0011 5 9
0411-0017 12 4
0411-0023 5 9
AE0250-086 5 6
AE0250-087 5 8
AE0250-089 5
AE0250-090 6 8
AE0250-092 5
AE0250-094 5
AE0250-095 5
Sonya 12 5
Co-op 38 12 5
AE0250-096 4 6
AE0250-327 4 6
Co-op 30 12 5
Jonagrimes 4 6
AE0211-036 5 8
G-07-039 5 9
PRI 14-152 4
PRI 47-176 4 5
G-07-041 5
BC-8S-27-43 5 8
AE0250-091 5
AE0250-097 5
AE0250-325 5
AE0250-326 5
AE0250-329 5
AE0250-333 4 5
AE0250-334 4 5
AE0250-335 5
AE0250-336 4 5
AE0250-338 4 5
AE0250-341 5
AE0211-038 12 8
AE0211-043 12 5
AE0211-051 12 5
G-07-010 14 9
G-07-014 13 9
G-07-015 14
G-07-019 13 5
G-07-020 14 9
G-07-024 14 5
G-07-033 13 9
G-07-035 13 5
G-07-044 14 9
AE0211-053 8 9
AE0211-054 8 9
AE0250-088 5 6
AE0250-324 5 9
AE0250-328 5 9
AE0250-331 5 9
AE0250-332 5 9
AE0250-337 5 6
AE0250-339 5 9
Minnewashta 6 9
Autumn Crisp 5 9
G-14-066 12 9
Lu1-11-010 5 9
Lu1-11-013 12 9
Lu1-11-016 5 9
Lu1-11-017 12 9
Lu1-11-018 12 9
NJ 90 12 9
Lord Lambourne 14 5
Antonovka GH 4 5
Grimes Golden 2 4
Kidds Orange Red 5 8
Malus baccata Hansen #2 5
Malus baccata Jackii 36 5
Summerred 14 9
William's Pride 13 45
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-03-11aApple-RosBREED-3.9K-201938.278.79
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Haplotypes
Marker 234567891011121314151617181920212223242526272829303132333435363738394041424344454647484950515253545556575859
RosBREEDSNP_SNP_AG_6588194_Lg3_01921_MAF10_MDP0000217309_exon3--AABAAAAAAAAAAA--AAAAAAAABABA-AB-ABA--A-BAAAAAAAAAAA-BAAA
RosBREEDSNP_SNP_CA_6212477_Lg3_00073_MAF40_1667405_exon2BBBBABBABAABBBABABBBBBBB--ABA-BBBAABA-ABBABAABB--AABB-BABB
RosBREEDSNP_SNP_CT_6561113_Lg3_01921_MAF40_962276_exon1ABBAB-ABABBBABBABAABB-----BAB-BBBBABB-BAAAAAABA--AA---B---
RosBREEDSNP_SNP_GA_6181881_Lg3_00073_MAF10_1646857_exon1BBBBBBBBBBBAABBBBB--BABBBBBAB-BBBBBBB-BAABBBAAABBBABA-AB--
RosBREEDSNP_SNP_GA_6242616_Lg3_00073_MAF30_1679536_exon2BBBBA-BABBBBBB--ABBB-BBB---AB-BABABAA-BBBAAAABBABAABB-BABB
RosBREEDSNP_SNP_GA_6539382_Lg3_01921_MAF30_1666387_exon1--BBBBAB--BAA-BABBABBAABB-BAB-BBB-BB-BB-AABBBBBBBAA--AA-B-
Alignments
Feature NameTypeLocationAnalysis
Chr03 chromosome Chr03:4807582..5208105. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation