Mdo-HB-03-11

Haplotype Block Overview
Name Mdo-HB-03-11
Species Malus x domestica
Stock Haplotype [view all 427]
Haplotype [view all]
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 5
Rome Beauty Law 4
Jonafree 4
Redfree 10
Spartan 10 9
Wagener 10
Worcester Pearmain 5 8
Tsugaru 5
Golden Delicious 4 5
Fuji 5 9
Empire 10 9
Gala 4 5
Honeycrisp 5
Elstar 5
Marshall McIntosh 10 11
Cripps Pink 10 4
Granny Smith 10
Jonathan 5 8
Ralls Janet 5
Delicious 4 9
Discovery 10 8
Prima 10 4
821 12
Fiesta 5 8
Ingrid Marie 10 5
Idared 10 8
Esopus Spitzenburg 10 5
Braeburn 10 9
Sansa 5 8
Lodi 10 4
James Grieve 10 5
Cripps Red 10 4
Burgundy 4 8
Akane 8
Ambrosia 5 9
Aurora Golden Gala 4 5
Beacon 21 22
Ben Davis 4 5 9
Chinook 4
Clivia 5 8
Co-op 17 4 9
Co-op 18 4
Dayton 10 4 5 8
Delblush 4 5
Delorgue 4 8
Dolgo 4
Geheimrat Dr. Oldenburg 5 8
Duchess of Oldenburg 5 6
Early Cortland 10 11 5
Empress 10 8
F2 26829-2-2 4 5
Fantazja 11 6
Fireside 11 6
Fortune 10 9
Frostbite 5 6
Ginger Gold 10 5
GMAL 4327 5 8
GMAL 4328 6 9
GMAL 4329 6 9
GMAL 4332 9
Goodland 10 6
Haralson 5 8
Honeygold 4 8
Hudson 5 9
Jersey Black 5
Jonamac 10 8
Keepsake 5
Kerr 4 8
Lady Williams 10 5
Liberty 5 8
Linda 6 9
Longfield 40 5
Macoun 11 5
Malinda 10 5
Melba 10 5
Melrose 4 8
MN 1627 5
MN 1628 5
MN 1691 11 6
MN 1706 8
MN 1708 5
MN 1760 27 9
MN 1764 5 6
MN 1789 11 5
MN 1802 5 6
MN 1836 11 5
MN 1837 11 5
MN 1839 5
MN 1888 11 5
MN 1899 11 6
MN 1940 8
MN 2016 4 8
AA-44 5 8
Monroe 4 8
Montgomery 10 4
Nicola 4 5
NJ 53 10 11
Oriole 5 8
PRI 14-126 4 5
PRI 14-510 4 5
PRI 16-144 4
PRI 1661-2 10 9
PRI 54-12 4 8
PRI 855-102 4
Primula 5
Raritan 10
Regent 11 5
Russian Seedling 16 36
Sawa 5 6
Sciros 4
Sharon 10
Silken 4 5
Wildung 10 6
Splendour 4
State Fair 11 8
NJ 55 11 5
Co-op 29 11 5
Sunrise 5
Sweet Sixteen 5 6
Topaz 4 5
Vista Bella 10 11
Wealthy 6 8
Winesap 4 9
Winter Banana 11 21
Yellow Newtown 10 8
Yellow Transparent 10 5
0407-0001 4
0407-0005 4 8
0407-0006 4 5
0407-0007 4
0407-0008 4 8
0408-0003 5
0408-0004 4 9
0408-0005 4 9
0408-0007 5 9
0408-0008 4 9
0408-0010 4 9
0408-0011 5
0408-0014 5
0408-0015 5
0409-0022 5
0409-0024 5
0409-0028 5
0409-0030 4 5
0409-0032 4 5
0409-0035 4 5
0409-0036 5
0409-0038 4 5
0409-0039 4 5
0409-0040 4 5
0409-0043 5
0409-0045 5
0410-0002 10 4
0410-0003 10 4
0410-0005 10 5
0410-0006 10 4
0410-0010 10 4
0410-0011 10 4
0410-0012 10 4
0410-0013 10 5
0410-0015 10 4
0410-0017 10 5
0410-0018 10 4
0414-0010 4 5
0414-0015 5 8
0414-0017 5 8
0414-0018 5 9
0414-0019 5 8
0414-0020 5
0414-0021 5 8
0415-0001 5 9
0415-0004 5 9
0415-0005 5
0415-0011 5 9
0415-0012 5 9
0415-0013 5
0415-0014 5
0415-0016 5 9
0415-0017 5
0415-0019 5 9
0415-0020 5
0415-0025 5 9
AE_HCxJonf-145 4 5
AE_HCXJonf-148 4 5
AE_HCxJonf-157 4 5
AE_HCXJonf-162 4 5
AE_HCXJonf-168 11 5
AE_HCxJonf-175 4 5
AE_HCxJonf-183 4 5
AE_HCxJonf-185 4 5
AE0118-237 11 5
AE0118-238 11 5
AE0118-239 5
AE0118-240 5
AE0118-243 11 5
AE0118-244 11 5
AE0118-245 11 5
AE0118-246 11 5
AE0118-249 11 5
AE0206-159 4 8
AE0206-160 4 8
AE0206-161 4 6
AE0206-162 5 6
AE0206-163 5 6
AE0206-164 5 8
AE0206-165 5 6
AE0206-167 4 6
AE0206-168 5 6
AE0206-169 5 8
AE0206-170 4 6
AE0210-146 5 6
AE0210-147 5 9
AE0210-149 5 9
AE0210-150 5 9
AE0210-151 5 6
AE0210-152 5 6
AE0210-153 5 6
AE0210-154 5 6
AE0210-157 5 6
AE0210-158 5 9
AE0210-159 5 9
AE0210-162 5 9
AE0210-163 5 6
AE0210-164 5 6
AE0210-165 5 9
AE0210-166 5 6
AE0210-168 5 9
AE0210-169 5 9
AE0210-170 5 6
AE0210-171 5 6
AE0210-172 5 9
AE0210-173 5 6
AE0210-174 5 6
AE0213-175 10 9
AE0213-176 10 9
AE0213-177 5 9
AE0213-178 10 9
AE0213-179 5 9
AE0213-180 5 9
AE0213-181 5 9
AE0213-182 5 9
AE0213-183 5 9
AE0213-186 5 9
AE0213-187 10 9
AE0213-190 10 9
AE0213-193 10 9
AE0213-194 10 9
AE0213-195 5 9
AE0213-196 5 9
AE0213-197 5 9
AE0213-198 5 8
AE0213-199 5 9
AE0213-200 5 9
AE0213-201 5 9
AE0213-202 5 9
AE0213-205 10 9
AE0213-206 10 9
AE0251-323 4 6
AE0251-325 5
AE0251-327 5
AE0251-329 5
AE0251-330 5 6
AE0251-331 4 5
AE0251-342 5 6
AE0251-343 5 6
AE0406-239 5
AE0406-254 5
AE0406-258 5
AE0406-259 5
AE0406-263 4 5
AE0406-264 5
AE0406-266 4 5
AE0406-271 4 5
AE0406-274 5
AE0406-278 4 5
AE0406-281 4 5
AE0406-286 4 5
AE0406-288 4 5
AE0406-289 4 5
AE0406-294 5
AE0406-298 4 5
Minneiska 5 6
PRI 612-1 4 9
Arlet 4 8
Co-op 39 8
Pinova 5 8
Scired 4
Scifresh 5 9
0409-0025 5
0409-0026 5
0409-0027 4 5
0409-0031 4 5
0409-0033 4 5
0409-0047 4 5
G-14-050 5 9
G-14-052 5
G-14-054 8 9
G-14-055 8 9
G-14-056 8 9
G-14-057 5
G-14-059 8 9
G-14-060 5 8
G-14-061 5 9
G-14-062 5 8
G-14-064 5 9
G-14-065 5 8
G-14-069 5
G-14-067 8 9
G-14-068 5
G-14-071 8 9
G-14-073 8 9
G-14-074 5 9
G-14-075 5
G-14-076 5
G-14-077 5
G-14-078 5 9
G-14-080 5 9
G-09-232 5 9
G-09-233 10 5
G-09-234 10 5
G-09-235 10
G-09-236 10 5
G-09-237 5 9
G-09-238 10 9
G-09-239 5 9
G-09-240 5 9
G-09-241 10 5
G-09-242 10
G-09-243 5 9
G-09-245 10 9
G-09-246 10
G-09-258 10 5
G-09-259 5 9
G-09-260 10
G-09-261 10 9
G-09-262 10 5
G-09-263 5 9
G-09-264 10
G-09-265 5 9
G-09-266 5 9
G-09-267 10 5
G-09-268 10
0408-0021 4 9
Wijcik McIntosh 39 5
Beauty of Bath 10
Priam 5 8
Northern Spy 5 8
Co-op 15 4 6
MN 1702 6
WA 2 4 5
WA 5 4 6
Pitmaston Pineapple 10 5
0411-0011 5 8
0411-0017 4 9
0411-0023 5 8
AE0250-086 5 6
AE0250-087 4 5
AE0250-089 5
AE0250-090 4 6
AE0250-092 4 5
AE0250-093 4 5
AE0250-094 5
AE0250-095 5
Sonya 5 9
Co-op 38 5 9
AE0250-096 5 6
AE0250-327 5 6
Co-op 30 5 9
Jonagrimes 4 6
AE0211-036 10 5
G-07-039 12 8
PRI 14-152 4
PRI 47-176 4 5
G-07-041 5
BC-8S-27-43 4 5
AE0250-091 5
AE0250-097 5
AE0250-325 5
AE0250-326 5
AE0250-329 5
AE0250-333 5
AE0250-334 5 8
AE0250-335 5
AE0250-336 5 8
AE0250-338 5 8
AE0250-341 5
AE0211-038 10 9
AE0211-043 5 9
AE0211-045 10 6
AE0211-051 5 6
G-07-010 10 8
G-07-014 10 8
G-07-015 10 5
G-07-019 10 5
G-07-020 10 8
G-07-024 10 5
G-07-032 10 5
G-07-033 10 8
G-07-034 10 5
G-07-035 10 5
G-07-044 10 8
AE0211-053 10 8
AE0211-054 10 8
AE0250-088 5 6
AE0250-324 5 8
AE0250-328 5 8
AE0250-331 5 8
AE0250-332 5 8
AE0250-337 5 6
AE0250-339 5 8
Minnewashta 6 8
Autumn Crisp 5 8
G-14-066 8 9
Lu1-11-010 11 5
Lu1-11-013 11 9
Lu1-11-016 11 5
Lu1-11-017 11 9
Lu1-11-018 11 9
NJ 90 11 9
Lord Lambourne 10 5
Antonovka GH 16 28
Grimes Golden 2 4
Kidds Orange Red 4 5
Malus baccata Hansen #2 12
Malus baccata Jackii 4
Summerred 10 11
William's Pride 10 11
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-03-11Apple-RosBREED-3.9K-201937.748.27
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Haplotypes
Marker 234567891011121314151617181920212223242526272829303132333435363738394041424344
GDsnp01263--ABBBABBBA-BBA----BBAB--BAAA-AABABBABBBBAA
RosBREEDSNP_SNP_CA_5949706_Lg3_01263_MAF50_581465_exon1ABBAB-BBABBB------BAB--A-A-AA---AB-BBBBAABA
RosBREEDSNP_SNP_CA_6160259_Lg3_00073_MAF20_1653735_exon1BBBBABABBBBBBABB-BABA--BAAAABBABBBBBBBAB--B
RosBREEDSNP_SNP_GA_6162720_Lg3_00073_MAF20_1629415_exon4BBBBBBBBABBBBBBBB-BBB--ABBBABBBABBBBAAA---B
RosBREEDSNP_SNP_TC_5968340_Lg3_01263_MAF50_20343_exon1ABBAB-BBAAAAABB---BBA--A-ABAAA----B-BABAABB
Alignments
Feature NameTypeLocationAnalysis
Chr03 chromosome Chr03:4525989..4776896. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation