Mdo-HB-02-9a

Haplotype Block Overview
Name Mdo-HB-02-9a
Species Malus x domestica
Stock Haplotype [view all 432]
Haplotype [view all]
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 17
Rome Beauty Law 5 9
Jonafree 4 9
Redfree 28 37
Spartan 3
Wagener 5 9
Worcester Pearmain 3
Tsugaru 3 4
Golden Delicious 3 4
Fuji 3 9
Empire 3 9
Gala 3 4
Honeycrisp 3
Elstar 3 4
Marshall McIntosh 3 9
Cripps Pink 3
Granny Smith 4 9
Jonathan 3 4
Ralls Janet 7 9
Delicious 3 4
Discovery 3
Prima 4 9
821 10 11
Fiesta 17 9
Ingrid Marie 17 3
Idared 3 9
Esopus Spitzenburg 3 6
Braeburn 17 4
Sansa 3 4
Lodi 4 9
James Grieve 17
Cripps Red 3 4
Burgundy 3 9
Akane 3 4
Ambrosia 3 4
Aurora Golden Gala 3 4
Beacon 10 31
Ben Davis 3 4 6
Cameo 3
Chinook 3 4
Clivia 17 26
Co-op 17 4 9
Co-op 18 28 37
Dayton 4 9
Delblush 3
Delorgue 3 4
Dolgo 21 4
Geheimrat Dr. Oldenburg 17 26
Duchess of Oldenburg 4 5
Early Cortland 3 4 9
Empress 4 9
F2 26829-2-2 4 9
Fantazja 9
Fireside 17 3
Fortune 3 4
Frostbite 4
Ginger Gold 4
GMAL 4327 28 9
GMAL 4328 28 9
GMAL 4329 26 28
GMAL 4332 17 28
Goodland 3
Haralson 17 3
Honeygold 3
Hudson 3
Jersey Black 6 8
Jonamac 3 4
Keepsake 3 4
Kerr 17 4
Lady Williams 3 9
Liberty 3 9
Linda 3 9
Longfield 17 26
Macoun 6 9
Malinda 17 9
Mantet 4
Melba 4 9
Melrose 3 4
MN 1627 3 4
MN 1628 3 4
MN 1691 3
MN 1706 4 6
MN 1708 4
MN 1760 3 6
MN 1764 4 6
MN 1789 3
MN 1802 4
MN 1836 3 4
MN 1837 3 4
MN 1839 17 3
MN 1888 3 4
MN 1899 17 3
MN 1940 3 4
MN 2016 3
AA-44 3 4
Monroe 3 9
Montgomery 4 9
Nicola 3 4
NJ 31 9
NJ 53 4 9
Oriole 4 5
PRI 14-126 4
PRI 14-510 4
PRI 16-144 4
PRI 1661-2 4 9
PRI 54-12 3 9
PRI 855-102 4
Primula 4 9
Raritan 9
Regent 3
Rubin 4
Russian Seedling 4
Sawa 4 9
Sciros 3 4
Sharon 3 5
Silken 3 9
Wildung 17 5
Splendour 4
State Fair 3 4
NJ 55 17 3
Co-op 29 3 4
Sunrise 9
Sweet Sixteen 3 4
Topaz 3 4
Vanda 3
Vista Bella 5 9
Wealthy 3 5
Winesap 3 4
Winter Banana 11 4
Yellow Newtown 28 5
Yellow Transparent 3 4
0407-0001 3
0407-0005 3 4
0407-0006 3 4
0407-0007 3 4
0407-0008 3
0408-0003 4
0408-0004 3 4
0408-0005 4
0408-0007 3 4
0408-0008 3 4
0408-0010 3 4
0408-0011 3
0408-0014 3 4
0408-0015 3 4
0409-0022 3
0409-0024 3 4
0409-0028 3 4
0409-0030 3
0409-0032 3 4
0409-0035 3
0409-0036 3 4
0409-0038 3 4
0409-0039 3
0409-0040 3
0409-0043 3
0409-0045 3 4
0410-0002 4
0410-0003 3 9
0410-0005 4 9
0410-0006 4
0410-0010 4
0410-0011 4 9
0410-0012 4
0410-0013 3 9
0410-0015 4
0410-0017 3 9
0410-0018 4 9
0414-0010 3
0414-0015 3
0414-0017 3
0414-0018 3 4
0414-0019 3
0414-0020 3 4
0414-0021 3
0415-0001 3
0415-0004 3 4
0415-0005 3
0415-0011 3
0415-0012 3 4
0415-0013 3 4
0415-0014 17 3
0415-0016 3
0415-0017 3 4
0415-0019 3
0415-0020 3 4
0415-0025 3
AE_HCxJonf-145 3 4
AE_HCXJonf-148 3 4
AE_HCxJonf-157 3 9
AE_HCXJonf-162 3 4
AE_HCXJonf-168 3
AE_HCxJonf-175 3 9
AE_HCxJonf-183 3 4
AE_HCxJonf-185 3 4
AE0118-237 3
AE0118-238 3
AE0118-239 3
AE0118-240 3
AE0118-243 3
AE0118-244 3
AE0118-245 3
AE0118-246 3
AE0118-249 3
AE0206-159 3
AE0206-160 3
AE0206-161 3
AE0206-162 3
AE0206-163 3 4
AE0206-164 3 4
AE0206-165 3
AE0206-167 3 4
AE0206-168 3
AE0206-169 3 4
AE0206-170 3
AE0210-146 28 9
AE0210-147 28 9
AE0210-149 28 9
AE0210-150 26 9
AE0210-151 28 9
AE0210-152 3 9
AE0210-153 26 9
AE0210-154 28 9
AE0210-157 26 9
AE0210-158 28 9
AE0210-159 26 9
AE0210-162 28 9
AE0210-163 26 9
AE0210-164 26 9
AE0210-165 26 9
AE0210-166 28 9
AE0210-168 28 9
AE0210-169 28 9
AE0210-170 26 9
AE0210-171 26 9
AE0210-172 26 9
AE0210-173 26 9
AE0210-174 26 9
AE0213-175 17 4
AE0213-176 28 4
AE0213-177 28 4
AE0213-178 28 4
AE0213-179 28 4
AE0213-180 17 4
AE0213-181 28 4
AE0213-182 28 4
AE0213-183 28 4
AE0213-186 17 4
AE0213-187 17 4
AE0213-190 17 4
AE0213-193 28 4
AE0213-194 28 4
AE0213-195 17 4
AE0213-196 28 4
AE0213-197 17 4
AE0213-198 4 9
AE0213-199 28 4
AE0213-200 28 4
AE0213-201 28 4
AE0213-202 28 4
AE0213-205 28 4
AE0213-206 28 4
AE0251-323 4
AE0251-325 4
AE0251-327 3 4
AE0251-329 3 4
AE0251-330 3
AE0251-331 3 4
AE0251-342 3 4
AE0251-343 3 4
AE0406-239 3 9
AE0406-254 3 9
AE0406-258 3 9
AE0406-259 3 9
AE0406-263 3
AE0406-264 3
AE0406-266 3 9
AE0406-271 3
AE0406-274 3 9
AE0406-278 3
AE0406-281 3
AE0406-286 3 9
AE0406-288 3
AE0406-289 3 9
AE0406-294 3
AE0406-298 3
Minneiska 3
NJ 303955 17
PRI 612-1 4
Arlet 3
Co-op 39 3 4
Pinova 17 3
Scired 3 4
Scifresh 17 4
0409-0025 3
0409-0026 3 4
0409-0027 3
0409-0031 3
0409-0033 3 4
0409-0047 3
G-14-050 3
G-14-052 3
G-14-054 17 3
G-14-055 17 3
G-14-056 3
G-14-057 17 3
G-14-059 17 3
G-14-060 3
G-14-061 17 3
G-14-062 3
G-14-064 17 3
G-14-065 3
G-14-069 3
G-14-067 3
G-14-068 3
G-14-071 3
G-14-073 17 3
G-14-074 3
G-14-075 17 3
G-14-076 17 3
G-14-077 3
G-14-078 3
G-14-080 17 3
G-09-232 17 4
G-09-233 4
G-09-234 17 4
G-09-235 4
G-09-236 17 4
G-09-237 17 4
G-09-238 4
G-09-239 17 4
G-09-240 17 4
G-09-241 4
G-09-242 17 4
G-09-243 17 4
G-09-245 17 4
G-09-246 17 4
G-09-258 17 4
G-09-259 17 4
G-09-260 4
G-09-261 17 4
G-09-262 4
G-09-263 17 4
G-09-264 17 4
G-09-265 4
G-09-266 17 4
G-09-267 4
G-09-268 4
0408-0021 4
Wijcik McIntosh 11 26
Priam 3 4
Northern Spy 3 6
Co-op 15 4 9
MN 1702 17 4
WA 2 3 4
WA 5 4
Pitmaston Pineapple 26 4
0411-0011 3
0411-0017 3
0411-0023 3 4
AE0250-086 3 4
AE0250-087 3 4
AE0250-089 4
AE0250-090 3 4
AE0250-092 4
AE0250-093 3
AE0250-094 3 4
AE0250-095 4
Sonya 3 4
Co-op 38 3 4
AE0250-096 3 4
AE0250-327 3 4
Co-op 30 3 4
Jonagrimes 3 5
AE0211-036 3 4
G-07-039 3 4
PRI 14-152 4 9
PRI 47-176 4 9
G-07-041 4 9
BC-8S-27-43 3 4
AE0250-091 3 9
AE0250-097 3 9
AE0250-325 28 3
AE0250-326 3 9
AE0250-329 3 9
AE0250-333 28 3
AE0250-334 28 3
AE0250-335 3 9
AE0250-336 3 9
AE0250-338 28 3
AE0250-341 3 9
AE0211-038 28 4
AE0211-043 4 9
AE0211-045 4 9
AE0211-051 4 9
G-07-010 3 4
G-07-014 3 4
G-07-015 3 9
G-07-019 3 9
G-07-020 3 9
G-07-024 3 9
G-07-032 4
G-07-033 4 9
G-07-034 4 9
G-07-035 4
G-07-044 3 4
AE0211-053 3 4
AE0211-054 3 4
AE0250-088 3
AE0250-324 3
AE0250-328 3
AE0250-331 3
AE0250-332 3
AE0250-337 3
AE0250-339 3
Minnewashta 3
Autumn Crisp 3
G-14-066 3
Lu1-11-010 3 9
Lu1-11-013 9
Lu1-11-016 9
Lu1-11-017 9
Lu1-11-018 3 9
NJ 90 3 9
Lord Lambourne 17 3
Antonovka GH 17 26
Grimes Golden 3
Kidds Orange Red 17 3
Malus baccata Hansen #2 11 9
Malus baccata Jackii 10 11
Summerred 16 3
William's Pride 4
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-02-9aApple-RosBREED-3.9K-201927.177.17
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Haplotypes
Marker 234567891011121314151617181920212223242526272829303132333435363738
RosBREEDSNP_SNP_CA_4183020_Lg2_00203_MAF40_1638035_exon3-ABAB--BAABA-BBA--A-A---B-BBABBABAAB-
RosBREEDSNP_SNP_CT_4173601_Lg2_00203_MAF20_405292_exon1BBBBBBAABA--BABBBBBBBA--B-BBBAB--AAAA
RosBREEDSNP_SNP_GA_4194273_Lg2_00203_MAF30_436930_exon1AABAAABBBB--BBBBB-AA--BAA-BABA-ABAABB
RosBREEDSNP_SNP_TC_4170859_Lg2_00203_MAF40_1650517_exon1-AABBBBBBBBBA--A-A-AAB--AAB--BA--B-AA
Alignments
Feature NameTypeLocationAnalysis
Chr02 chromosome Chr02:3627175..3666490. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation