Mdo-HB-02-9

Haplotype Block Overview
Name Mdo-HB-02-9
Species Malus x domestica
Stock Haplotype [view all 430]
Haplotype [view all]
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 17
Rome Beauty Law 11 9
Jonafree 6 9
Redfree 17 69
Spartan 3
Wagener 3 9
Worcester Pearmain 11 4
Tsugaru 4 7
Golden Delicious 3 4
Fuji 3 9
Empire 3 9
Gala 3 4
Honeycrisp 3
Elstar 3 4
Marshall McIntosh 3 9
Cripps Pink 3
Granny Smith 10 9
Jonathan 4 7
Ralls Janet 2 9
Delicious 3 6
Discovery 4
Prima 4 9
821 13
Fiesta 17 9
Ingrid Marie 17 3
Idared 4 9
Esopus Spitzenburg 3 7
Braeburn 17 6
Sansa 4
Lodi 23 31
James Grieve 17 47
Cripps Red 3 4
Burgundy 3 9
Akane 4
Ambrosia 3 6
Aurora Golden Gala 3 6
Beacon 31 5
Ben Davis 3 6
Cameo 3
Chinook 3 6
Clivia 17 7
Co-op 17 6 9
Co-op 18 56 57
Dayton 31 4 9
Delblush 3
Delorgue 3 4
Dolgo 2 23
Geheimrat Dr. Oldenburg 4 7
Duchess of Oldenburg 4 5
Early Cortland 3 31 6
Empress 31 4
F2 26829-2-2 6 9
Fantazja 31 9
Fireside 17 7
Fortune 4 5
Frostbite 4 6
Ginger Gold 23 4
GMAL 4327 37 9
GMAL 4328 3 9
GMAL 4329 3 7
GMAL 4332 17 37
Goodland 3
Haralson 17 7
Honeygold 3 7
Hudson 3
Jersey Black 3
Jonamac 3 4
Keepsake 3 6
Kerr 17 23
Lady Williams 3 9
Liberty 7 9
Linda 31 7
Liveland Raspberry 4 9
Longfield 3 66
Macoun 3 9
Malinda 17 31
Melba 9
Melrose 3 4
MN 1627 3 4
MN 1628 3 4
MN 1691 3 7
MN 1706 47 51
MN 1708 4 6
MN 1760 3 7
MN 1764 3 4
MN 1789 3
MN 1802 6
MN 1836 23 3
MN 1837 3 4
MN 1839 17 3
MN 1888 4 7
MN 1899 17 3
MN 1940 4 7
MN 2016 3 7
AA-44 3 4
Monroe 7 9
Montgomery 31 4
Nicola 3 6
NJ 31 3 9
NJ 53 23 31
Oriole 4 5
PRI 14-126 4 6
PRI 14-510 4
PRI 16-144 6
PRI 1661-2 6 9
PRI 54-12 7 9
PRI 855-102 6
Primula 6 9
Raritan 67 68
Regent 3 7
Rubin 4
Russian Seedling 24 67
Sawa 31 6
Sciros 3 6
Sharon 3 5
Silken 34 7
Wildung 17 5
Splendour 4 6
State Fair 23 7
NJ 55 17 3
Co-op 29 3 4
Sunrise 34 9
Sweet Sixteen 3 4
Topaz 3 4
Vanda 3
Vista Bella 31 5
Wealthy 5 7
Winesap 6 7
Winter Banana 17 9
Yellow Newtown 37 70
Yellow Transparent 23 3
0407-0001 3 4
0407-0005 4 6
0407-0006 3 6
0407-0007 3 6
0407-0008 3 4
0408-0003 6
0408-0004 3 6
0408-0005 6
0408-0007 6 7
0408-0008 3 6
0408-0010 3 6
0408-0011 3 7
0408-0014 6 7
0408-0015 3 6
0409-0022 3
0409-0024 3 6
0409-0028 3 6
0409-0030 3
0409-0032 3 6
0409-0035 3
0409-0036 3 6
0409-0038 3 6
0409-0039 3
0409-0040 3
0409-0043 3
0410-0002 10 6
0410-0003 3 9
0410-0005 6 9
0410-0006 10 6
0410-0010 10 6
0410-0011 6 9
0410-0012 10 6
0410-0013 3 9
0410-0015 10 6
0410-0017 3 9
0410-0018 6 9
0414-0010 3 4
0414-0015 3
0414-0017 3
0414-0018 3 6
0414-0019 3 4
0414-0020 3 6
0414-0021 3 4
0415-0001 3 7
0415-0004 3 6
0415-0005 3 7
0415-0011 3 7
0415-0012 3 6
0415-0013 3 6
0415-0014 17 3
0415-0016 3 7
0415-0017 3 6
0415-0019 3 7
0415-0020 3 6
0415-0025 3 7
AE_HCxJonf-145 3 6
AE_HCXJonf-148 3 6
AE_HCxJonf-157 3 9
AE_HCXJonf-162 3 6
AE_HCXJonf-168 3
AE_HCxJonf-175 3 9
AE_HCxJonf-183 3 6
AE_HCxJonf-185 3 6
AE0118-237 3
AE0118-238 3 7
AE0118-239 3
AE0118-240 3
AE0118-243 3
AE0118-244 3 7
AE0118-245 3 7
AE0118-246 3 7
AE0118-249 3 7
AE0206-159 3
AE0206-160 3
AE0206-161 3 7
AE0206-162 3 7
AE0206-163 3 4
AE0206-164 3 4
AE0206-165 3 7
AE0206-167 4 7
AE0206-168 3
AE0206-169 3 4
AE0206-170 3 7
AE0210-146 3 9
AE0210-147 3 34
AE0210-149 3 34
AE0210-150 34 7
AE0210-151 3 34
AE0210-152 7 9
AE0210-153 7 9
AE0210-154 3 9
AE0210-157 34 7
AE0210-158 3 34
AE0210-159 7 9
AE0210-162 3 34
AE0210-163 7 9
AE0210-164 7 9
AE0210-165 7 9
AE0210-166 3 34
AE0210-168 3 34
AE0210-169 3 34
AE0210-170 34 7
AE0210-171 7 9
AE0210-172 34 7
AE0210-173 7 9
AE0210-174 34 7
AE0213-175 17 23
AE0213-176 23 37
AE0213-177 37 4
AE0213-178 37 4
AE0213-179 23 37
AE0213-180 17 23
AE0213-181 37 4
AE0213-182 23 37
AE0213-183 37 4
AE0213-186 17 4
AE0213-187 17 23
AE0213-190 17 4
AE0213-193 37 4
AE0213-194 37 4
AE0213-195 17 23
AE0213-196 37 4
AE0213-197 17 4
AE0213-198 23 9
AE0213-199 37 4
AE0213-200 37 4
AE0213-201 37 4
AE0213-202 37 4
AE0213-205 23 37
AE0213-206 37 4
AE0251-323 4
AE0251-325 4
AE0251-327 3 4
AE0251-329 3 4
AE0251-330 3
AE0251-331 3 4
AE0251-342 3 4
AE0251-343 3 4
AE0406-239 3 34
AE0406-254 3 34
AE0406-258 3 34
AE0406-259 3 34
AE0406-263 3 7
AE0406-264 3 7
AE0406-266 3 34
AE0406-271 3
AE0406-274 3 34
AE0406-278 3 7
AE0406-281 3 7
AE0406-286 3 34
AE0406-288 3 7
AE0406-289 3 34
AE0406-294 3 7
AE0406-298 3 7
Minneiska 3 7
NJ 303955 17
PRI 612-1 6
Arlet 3 4
Co-op 39 3 4
Pinova 17 3
Scired 3 4
Scifresh 17 4
0409-0025 3
0409-0026 3 6
0409-0027 3
0409-0031 3
0409-0033 3 6
0409-0047 3
G-14-050 3
G-14-052 3
G-14-054 17 3
G-14-055 17 3
G-14-056 3
G-14-057 17 3
G-14-059 17 3
G-14-060 3
G-14-061 17 3
G-14-062 3
G-14-064 17 3
G-14-065 3
G-14-069 3
G-14-067 3
G-14-068 3
G-14-071 3
G-14-073 17 3
G-14-074 3
G-14-075 17 3
G-14-076 17 3
G-14-077 3
G-14-078 3
G-14-080 17 3
G-09-232 17 23
G-09-233 23 6
G-09-234 17 23
G-09-235 23 6
G-09-236 17 4
G-09-237 17 4
G-09-238 23 6
G-09-239 17 23
G-09-240 17 4
G-09-241 23 6
G-09-242 17 4
G-09-243 17 4
G-09-245 17 4
G-09-246 17 23
G-09-258 17 23
G-09-259 17 4
G-09-260 4 6
G-09-261 17 23
G-09-262 4 6
G-09-263 17 4
G-09-264 17 4
G-09-265 23 6
G-09-266 17 23
G-09-267 4 6
G-09-268 4 6
0408-0021 6
Wijcik McIntosh 47 66
Beauty of Bath 4 9
Priam 6 7
Northern Spy 3
Co-op 15 6 9
MN 1702 17 4
WA 2 3 6
WA 5 4 6
Pitmaston Pineapple 4 7
0411-0011 4 7
0411-0017 4 7
0411-0023 4 6
AE0250-086 3 4
AE0250-087 3 4
AE0250-089 4
AE0250-090 3 4
AE0250-092 4
AE0250-093 3
AE0250-094 3 4
AE0250-095 4
Sonya 3 6
Co-op 38 3 6
AE0250-096 3 4
AE0250-327 4 7
Co-op 30 6 7
AE0211-036 23 3
G-07-039 3 4
PRI 47-176 4 9
G-07-041 4 9
BC-8S-27-43 3 4
AE0250-091 3 9
AE0250-097 3 9
AE0250-325 3 37
AE0250-326 3 9
AE0250-329 3 9
AE0250-333 3 37
AE0250-334 3 37
AE0250-335 3 9
AE0250-336 3 9
AE0250-338 3 37
AE0250-341 3 9
AE0211-038 3 4
AE0211-043 23 9
AE0211-045 4 9
AE0211-051 4 9
G-07-010 10 4
G-07-014 10 4
G-07-015 4 9
G-07-019 4 9
G-07-020 4 9
G-07-024 4 9
G-07-032 10 4
G-07-033 4 9
G-07-034 4 9
G-07-035 10 4
G-07-044 10 4
AE0211-053 3 4
AE0211-054 4 7
AE0250-088 3 7
AE0250-324 3 7
AE0250-328 3 7
AE0250-331 3 7
AE0250-332 3 7
AE0250-337 3
AE0250-339 3
Minnewashta 3 7
Autumn Crisp 3 7
G-14-066 3
Lu1-11-010 3 9
Lu1-11-013 9
Lu1-11-016 9
Lu1-11-017 9
Lu1-11-018 3 9
NJ 90 3 9
Lord Lambourne 11 17
Antonovka GH 22 5
Grimes Golden 3
Kidds Orange Red 17 3
Malus baccata Hansen #2 3
Malus baccata Jackii 3
Summerred 3 4
William's Pride 23
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-02-9Apple-RosBREED-3.9K-201927.177.96
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Haplotypes
Marker 234567891011121314151617181920212223242526272829303132333435363738394041424344454647484950515253545556575859606162636465666768697071
GDsnp00203-ABABA-BAAB----A--ABBAB----BAA--AABA-ABAAABABAABAA----BB-ABABA-ABBABAB
RosBREEDSNP_SNP_AG_4227094_Lg2_00203_MAF50_MDP0000251579_exon2AAAAABBBBABA--ABB-AAABABA----A--ABBBAAAABAA--AB--BBBABBABB--ABBABBABAA
RosBREEDSNP_SNP_GA_4215730_Lg2_00203_MAF30_1629274_exon2-ABBBA-BA--ABA-B--ABAABAB--BAB--B--BB------ABA-BAA----BBB-BA--BABBBAAA
RosBREEDSNP_SNP_GT_4340866_Lg2_01945_MAF20_MDP0000457988_exon1-BBBAB-BBBBBBB-B----BBBBBBABBBBBB--BB----BA--BB--B--BBABBBBABBBABBBBBA
RosBREEDSNP_SNP_TG_4243315_Lg2_00203_MAF10_1663560_exon1-AAAAA-AA--A--AB-AAAABB--AA--BAABAAAA--ABAA--A-AABAAAAAA-BAAAAAAABAABA
RosBREEDSNP_SNP_TG_4345275_Lg2_01945_MAF40_888400_exon1AAAAAABBBABA--ABAAAAABABA----AABBABAAAAABAA--BBAAABAAAABBBAAABBAAABBAA
Alignments
Feature NameTypeLocationAnalysis
Chr02 chromosome Chr02:3676439..3801983. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation