Mdo-HB-02-8

Haplotype Block Overview
Name Mdo-HB-02-8
Species Malus x domestica
Stock Haplotype [view all 429]
Haplotype [view all]
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 28
Rome Beauty Law 15 17
Jonafree 15 7
Redfree 15 22
Spartan 13 16
Wagener 13 15
Worcester Pearmain 13 4
Tsugaru 29 5
Golden Delicious 4 5
Fuji 13 15
Empire 13 15
Gala 13 5
Honeycrisp 4
Elstar 4 5
Marshall McIntosh 15 16
Cripps Pink 4
Granny Smith 15 7
Jonathan 29 5
Ralls Janet 15 2
Delicious 13 7
Discovery 15 4
Prima 15 5
821 19
Fiesta 15 28
Ingrid Marie 28 4
Idared 15 29
Esopus Spitzenburg 10 29
Braeburn 28 7
Sansa 4 5
Lodi 5
James Grieve 28 69
Cripps Red 4 5
Burgundy 15 4
Akane 4 5
Ambrosia 4 7
Aurora Golden Gala 13 7
Beacon 5 6
Ben Davis 10 4 7
Cameo 13 4
Chinook 13 7
Clivia 13 28
Co-op 17 15 7
Co-op 18 15 7
Dayton 15 5
Delblush 4
Delcorf 4
Delorgue 4 5
Dolgo 65 7
Geheimrat Dr. Oldenburg 13 49
Duchess of Oldenburg 6 7
Early Cortland 16 5 7
Empress 16 5
F2 26829-2-2 15 7
Fantazja 15 5
Fireside 28 29
Fortune 13 5
Frostbite 5 7
Ginger Gold 5
GMAL 4327 15 7
GMAL 4328 15 5
GMAL 4329 5 52
GMAL 4332 56 57
Goodland 16 29
Haralson 29 7
Honeygold 29 4
Hudson 13 4
Jersey Black 10 31
Jonamac 16 5
Keepsake 4 7
Kerr 7
Lady Williams 15 4
Liberty 15 29
Linda 29 5
Liveland Raspberry 5 74
Longfield 105 106
Macoun 10 15
Malinda 5 7
Mantet 7
Melba 15 74
Melrose 13 5
MN 1627 4 7
MN 1628 4 5
MN 1691 16 29
MN 1706 77 78
MN 1708 7
MN 1760 10 29
MN 1764 10 5
MN 1789 16 4
MN 1802 7
MN 1836 4 7
MN 1837 16 7
MN 1839 28 4
MN 1888 29 7
MN 1899 16 28
MN 1940 16 29
MN 2016 29 4
AA-44 4 5
Monroe 15 29
Montgomery 5
Nicola 13 7
NJ 31 15
NJ 53 5 7
Oriole 5 6
PRI 14-126 5 7
PRI 14-510 5
PRI 16-144 7
PRI 1661-2 15 7
PRI 855-102 7
Primula 15 7
Raritan 15 5
Regent 16 29
Rubin 5
Russian Seedling 5 7
Sawa 5 7
Sciros 13 7
Sharon 16 6
Silken 29 5
Wildung 28 6
Splendour 5 7
State Fair 29 7
NJ 55 28 4
Co-op 29 16 5
Sunrise 15 5
Sweet Sixteen 4 5
Topaz 13 5
Vanda 13
Vista Bella 5 6
Wealthy 29 6
Winesap 12 7
Winter Banana 101 16
Yellow Newtown 102 5
Yellow Transparent 5 52
0407-0001 13 29
0407-0005 29 7
0407-0006 4 7
0407-0007 4 7
0407-0008 13 29
0408-0003 7
0408-0004 13 7
0408-0005 7
0408-0007 29 7
0408-0008 13 7
0408-0010 13 7
0408-0011 13 29
0408-0014 29 7
0408-0015 13 7
0409-0022 13 4
0409-0024 4 7
0409-0028 4 7
0409-0030 13 4
0409-0032 4 7
0409-0035 13 4
0409-0036 4 7
0409-0038 4 7
0409-0039 13 4
0409-0040 13 4
0409-0043 13 4
0409-0045 4 7
0410-0002 7
0410-0003 13 15
0410-0005 15 7
0410-0006 7
0410-0010 7
0410-0011 15 7
0410-0012 7
0410-0013 13 15
0410-0015 7
0410-0017 13 15
0410-0018 15 7
0414-0010 29 4
0414-0015 4
0414-0017 4
0414-0018 4 7
0414-0019 29 4
0414-0020 4 7
0414-0021 29 4
0415-0001 29 4
0415-0004 4 7
0415-0005 29 4
0415-0011 29 4
0415-0012 4 7
0415-0013 4 7
0415-0014 28 4
0415-0016 29 4
0415-0017 4 7
0415-0019 29 4
0415-0020 4 7
0415-0025 29 4
AE_HCxJonf-145 4 7
AE_HCXJonf-148 4 7
AE_HCxJonf-157 15 4
AE_HCXJonf-162 4 7
AE_HCXJonf-168 16 4
AE_HCxJonf-175 15 4
AE_HCxJonf-183 4 7
AE_HCxJonf-185 4 7
AE0118-237 16 4
AE0118-238 29 4
AE0118-239 4
AE0118-240 16 4
AE0118-243 16 4
AE0118-244 29 4
AE0118-245 29 4
AE0118-246 29 4
AE0118-249 29 4
AE0206-159 13 16
AE0206-160 13 16
AE0206-161 13 29
AE0206-162 13 29
AE0206-163 16 5
AE0206-164 16 5
AE0206-165 13 29
AE0206-167 29 5
AE0206-168 13 16
AE0206-169 16 5
AE0210-146 15 5
AE0210-147 5
AE0210-149 5
AE0210-150 5 52
AE0210-151 5
AE0210-152 15 29
AE0210-153 15 52
AE0210-154 15 5
AE0210-157 5 52
AE0210-158 5
AE0210-159 15 52
AE0210-162 5
AE0210-163 15 52
AE0210-164 15 52
AE0210-165 15 52
AE0210-166 5
AE0210-168 5
AE0210-169 5
AE0210-170 5 52
AE0210-171 15 52
AE0210-172 5 52
AE0210-173 15 52
AE0210-174 5 52
AE0213-175 5 56
AE0213-176 5 57
AE0213-177 5 57
AE0213-178 5 57
AE0213-179 5 57
AE0213-180 5 56
AE0213-181 5 57
AE0213-182 5 57
AE0213-183 5 57
AE0213-186 5 56
AE0213-187 5 56
AE0213-190 5 56
AE0213-193 5 57
AE0213-194 5 57
AE0213-195 5 56
AE0213-196 5 57
AE0213-197 5 56
AE0213-198 5 58
AE0213-199 5 57
AE0213-200 5 57
AE0213-201 5 57
AE0213-202 5 57
AE0213-205 5 57
AE0213-206 5 57
AE0251-323 5
AE0251-327 4 5
AE0251-329 4 5
AE0251-330 13 4
AE0251-331 4 5
AE0251-342 13 5
AE0251-343 4 5
AE0406-239 4 5
AE0406-254 4 5
AE0406-258 4 5
AE0406-259 4 5
AE0406-263 29 4
AE0406-264 29 4
AE0406-266 4 5
AE0406-271 4
AE0406-274 4 5
AE0406-278 29 4
AE0406-281 29 4
AE0406-286 4 5
AE0406-288 29 4
AE0406-289 4 5
AE0406-294 29 4
AE0406-298 29 4
Minneiska 29 4
NJ 303955 28
PRI 612-1 7
Arlet 29 4
Co-op 39 4 5
Pinova 28 4
Scired 13 5
Scifresh 28 5
0409-0025 13 4
0409-0026 4 7
0409-0027 13 4
0409-0031 13 4
0409-0033 4 7
0409-0047 13 4
G-14-050 13 4
G-14-052 13 4
G-14-054 13 28
G-14-055 13 28
G-14-056 13 4
G-14-057 13 28
G-14-059 13 28
G-14-060 13 4
G-14-061 13 28
G-14-062 4
G-14-064 28 4
G-14-065 13 4
G-14-069 13 4
G-14-067 4
G-14-068 4
G-14-071 4
G-14-073 13 28
G-14-074 4
G-14-075 28 4
G-14-076 28 4
G-14-077 13 4
G-14-078 4
G-14-080 28 4
G-09-232 28 5
G-09-233 5 7
G-09-234 28 5
G-09-235 5 7
G-09-236 28 5
G-09-237 28 5
G-09-238 5 7
G-09-239 28 5
G-09-240 28 5
G-09-241 5 7
G-09-242 28 5
G-09-243 28 5
G-09-245 28 5
G-09-246 28 5
G-09-258 28 5
G-09-259 28 5
G-09-260 5 7
G-09-261 28 5
G-09-262 5 7
G-09-263 28 5
G-09-264 28 5
G-09-265 5 7
G-09-266 28 5
G-09-267 5 7
G-09-268 5 7
0408-0021 7
Wijcik McIntosh 100 99
Beauty of Bath 15
Priam 29 7
Northern Spy 10 4
Co-op 15 15 7
MN 1702 28 5
WA 2 13 7
WA 5 5 7
Pitmaston Pineapple 13 7
0411-0011 29
0411-0017 29
0411-0023 29 7
AE0250-086 13 5
AE0250-087 13 5
AE0250-089 5
AE0250-090 4 5
AE0250-092 5
AE0250-093 13 4
AE0250-094 13 5
AE0250-095 5
Sonya 13 7
Co-op 38 4 7
AE0250-096 16 5
AE0250-327 29 5
Co-op 30 29 7
Jonagrimes 4 6
AE0211-036 5 54
G-07-039 13 5
G-07-041 15 5
BC-8S-27-43 13 5
AE0250-091 15 4
AE0250-097 15 4
AE0250-325 4 7
AE0250-326 15 4
AE0250-329 15 4
AE0250-333 4 7
AE0250-334 4 7
AE0250-335 15 4
AE0250-336 15 4
AE0250-338 4 7
AE0250-341 15 4
AE0211-038 5
AE0211-043 15 5
AE0211-051 15 5
G-07-010 4 7
G-07-014 4 7
G-07-015 15 4
G-07-019 15 4
G-07-020 15 4
G-07-024 15 4
G-07-032 5 7
G-07-033 15 5
G-07-034 15 5
G-07-035 5 7
G-07-044 4 7
AE0211-053 16 5
AE0211-054 29 5
AE0250-088 29 4
AE0250-324 29 4
AE0250-328 29 4
AE0250-331 29 4
AE0250-332 29 4
AE0250-337 16 4
AE0250-339 16 4
Minnewashta 16 29
Autumn Crisp 29 4
G-14-066 4
Lu1-11-010 13 15
Lu1-11-013 15
Lu1-11-016 15
Lu1-11-017 15
Lu1-11-018 15 4
NJ 90 15 16
Lord Lambourne 13 28
Antonovka GH 103 104
Grimes Golden 2 4
Kidds Orange Red 13 28
Malus baccata Hansen #2 19
Malus baccata Jackii 19
Summerred 107 16
William's Pride 7
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-02-8Apple-RosBREED-3.9K-201926.857.17
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Haplotypes
Marker 23456789101112131415161718192021222324252627282930313233343536373839404142434445464748495051525354555657585960616263646566676869707172737475767778798081828384858687888990919293949596979899100101102103104105106107108109
GDsnp01476AAABBBBAABBBBBBBBBBBBBBBABBBBBABA-ABBBB--BA-AB-B--BBBBBBB-BBBB-AB--B--BBBBBBABBBBB-ABA--BBBBBBBBBBBBABABBBBB
RosBREEDSNP_SNP_AG_4025888_Lg2_01476_MAF10_203524_exon1--AAAAAABAAA-AAAAAAAAAAAAAAA--AAAAAABA-AA--AAA-AAABABAAAAA-AAA-----A--A--AAABAAA-AABAAAAAAAAAAAAAAAABAAAAAAA
RosBREEDSNP_SNP_AG_7249592_Lg1--ABABBAABBA-BBABB--BBB-ABAB--ABBA--BBB--BABAA-B--BBB-ABB--B-------B--A--BABA-BB-B-AAB--ABB-ABABABBAABABBBBA
RosBREEDSNP_SNP_GA_4023123_Lg2_01476_MAF20_512064_exon1--BBBBBBBBBB-BBBBBBBBBBBBBAB--BBBBBBBBBBBBBBBB-BBBB--B---B-BBA-----B-----BBBBBBB--BABBBBBABBBBBBBBBABBBBBBBB
RosBREEDSNP_SNP_GT_4012052_Lg2_01476_MAF30_143988_exon1ABBBAB--ABABBBABBABABBBBBBAAAB--BBBBBBBB---BBB-A--BBBAABBBBABA-AB--A--BBB--ABBBABBAABBBBBABBB--BAABBABBABBAB
RosBREEDSNP_SNP_GT_4015212_Lg2_01476_MAF20_795360_exon1--BBBBBBBBAB-BBBBBBBBBBBBBBA----BBBBBBBB-BBBBBBBBBBBBABBBB-ABB-BB--A--BBBBBBBB---BAB--BBBBBBBABBBBBBBBBAB--B
RosBREEDSNP_SNP_TC_4030165_Lg2_01476_MAF50_MDP0000298759_exon1BBBABAABBABBAABBABABAAAA--BBBA--ABBBAB---ABABB-B--BABBBAA-B-BB-BABAB--BAAABABAABAA-BABBA---AABBABABABBABAABA
RosBREEDSNP_SNP_TC_4045153_Lg2_01476_MAF40_MDP0000283610_exon27--AAABBAA--A-AA--A--BAB-AAAA--AAAAAAAAA----A---AAAAAA-ABBA-A--AAB--ABAAAB--AB----BAAAAAAAAAAAAAAAAAABBAABBAA
Alignments
Feature NameTypeLocationAnalysis
Chr02 chromosome Chr02:3473106..3617363. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation