Mdo-HB-02-7

Haplotype Block Overview
Name Mdo-HB-02-7
Species Malus x domestica
Stock Haplotype [view all 428]
Haplotype [view all]
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 4 6
Rome Beauty Law 3 5
Jonafree 3 5
Redfree 13 14
Spartan 2 6
Wagener 2 3
Worcester Pearmain 2 6
Tsugaru 3 6
Golden Delicious 2 3
Fuji 3 6
Empire 3 6
Gala 3 6
Honeycrisp 2
Elstar 2 3
Marshall McIntosh 2 3
Cripps Pink 2
Granny Smith 3 7
Jonathan 3 6
Ralls Janet 2 3
Delicious 5 6
Discovery 2
Prima 3
821 6
Fiesta 3 4
Ingrid Marie 2 6
Idared 3 6
Esopus Spitzenburg 2 6
Braeburn 4 5
Sansa 2 3
Lodi 4 5
James Grieve 6
Cripps Red 2 3
Burgundy 2 3
Akane 2 3
Ambrosia 2 5
Aurora Golden Gala 5 6
Beacon 4 5
Ben Davis 2 5
Cameo 2 6
Chinook 5 6
Clivia 4
Co-op 17 3 5
Co-op 18 25 26
Dayton 3 6
Delblush 2
Delorgue 2 3
Dolgo 2
Geheimrat Dr. Oldenburg 4 6
Duchess of Oldenburg 4 5
Early Cortland 2 5
Empress 2 6
F2 26829-2-2 5 6
Fantazja 3 5
Fireside 6
Fortune 3 6
Frostbite 3 5
Ginger Gold 3 4
GMAL 4327 3 5
GMAL 4328 3 5
GMAL 4329 5 6
GMAL 4332 4 5
Goodland 2 6
Haralson 5 6
Honeygold 2 6
Hudson 2 6
Jersey Black 2 5
Jonamac 2 3
Keepsake 2 5
Kerr 2 5
Lady Williams 2 3
Liberty 3 6
Linda 5 6
Longfield 5 6
Macoun 2 3
Malinda 5
Melba 2 3
Melrose 3 6
MN 1627 2 5
MN 1628 2 3
MN 1691 2 6
MN 1706 2
MN 1708 5
MN 1760 2 6
MN 1764 2 3
MN 1789 2
MN 1802 5
MN 1836 2 5
MN 1837 2 5
MN 1839 2 6
MN 1888 5 6
MN 1899 2 6
MN 1940 2 6
MN 2016 2 6
AA-44 2 3
Monroe 3 6
Montgomery 3 5
Nicola 5 6
NJ 31 3
NJ 53 2 6
Oriole 3 4
PRI 14-126 3 5
PRI 14-510 3 5
PRI 16-144 5
PRI 1661-2 3 5
PRI 54-12 6
PRI 855-102 5
Primula 3 5
Raritan 3 6
Regent 2 6
Rubin 3
Russian Seedling 4 5
Sawa 5
Sciros 5 6
Sharon 2 4
Silken 6
Wildung 4 6
Splendour 3 5
State Fair 2 6
NJ 55 2 6
Co-op 29 2 3
Sunrise 3 6
Sweet Sixteen 2 3
Topaz 3 6
Vanda 6
Vista Bella 4 6
Wealthy 4 6
Winesap 5 6
Winter Banana 4
Yellow Newtown 2
Yellow Transparent 4 6
0407-0001 6
0407-0005 5 6
0407-0006 2 5
0407-0007 2 5
0407-0008 6
0408-0003 5
0408-0004 5 6
0408-0005 5
0408-0007 5 6
0408-0008 5 6
0408-0010 5 6
0408-0011 6
0408-0014 5 6
0408-0015 5 6
0409-0022 2 6
0409-0024 2 5
0409-0028 2 5
0409-0030 2 6
0409-0032 2 5
0409-0035 2 6
0409-0036 2 5
0409-0038 2 5
0409-0039 2 6
0409-0040 2 6
0409-0043 2 6
0409-0045 2 5
0410-0002 5 7
0410-0003 3 6
0410-0005 3 5
0410-0006 5 7
0410-0010 5 7
0410-0011 3 5
0410-0012 5 7
0410-0013 3 6
0410-0015 5 7
0410-0017 3 6
0410-0018 3 5
0414-0010 2 6
0414-0015 2
0414-0017 2
0414-0018 2 5
0414-0019 2 6
0414-0020 2 5
0414-0021 2 6
0415-0001 2 6
0415-0004 2 5
0415-0005 2 6
0415-0011 2 6
0415-0012 2 5
0415-0013 2 5
0415-0014 2 4
0415-0016 2 6
0415-0017 2 5
0415-0019 2 6
0415-0020 2 5
0415-0025 2 6
AE_HCxJonf-145 2 5
AE_HCXJonf-148 2 5
AE_HCxJonf-157 2 3
AE_HCXJonf-162 2 5
AE_HCXJonf-168 2
AE_HCxJonf-175 2 5
AE_HCxJonf-183 2 5
AE_HCxJonf-185 2 5
AE0118-237 2
AE0118-238 2 6
AE0118-239 2
AE0118-240 2
AE0118-243 2 6
AE0118-244 2 6
AE0118-245 2 6
AE0118-246 2 6
AE0118-249 2 6
AE0206-159 2 6
AE0206-160 2 6
AE0206-161 6
AE0206-162 6
AE0206-163 2 3
AE0206-164 2 3
AE0206-165 6
AE0206-167 3 6
AE0206-168 2 6
AE0206-169 2 3
AE0206-170 2 6
AE0210-146 3 5
AE0210-147 5 6
AE0210-149 5 6
AE0210-150 6
AE0210-151 5 6
AE0210-152 3 6
AE0210-153 3 6
AE0210-154 3 5
AE0210-157 6
AE0210-158 5 6
AE0210-159 3 6
AE0210-162 5 6
AE0210-163 3 6
AE0210-164 3 6
AE0210-165 3 6
AE0210-166 5 6
AE0210-168 5 6
AE0210-169 5 6
AE0210-170 6
AE0210-171 3 6
AE0210-172 6
AE0210-173 3 6
AE0210-174 6
AE0213-175 4
AE0213-176 4 5
AE0213-177 3 5
AE0213-178 3 5
AE0213-179 4 5
AE0213-180 4
AE0213-181 3 5
AE0213-182 4 5
AE0213-183 3 5
AE0213-186 3 4
AE0213-187 4
AE0213-190 3 4
AE0213-193 3 5
AE0213-194 3 5
AE0213-195 4
AE0213-196 3 5
AE0213-197 3 4
AE0213-198 4 5
AE0213-199 3 5
AE0213-200 3 5
AE0213-201 3 5
AE0213-202 3 5
AE0213-205 4 5
AE0213-206 3 5
AE0251-323 3
AE0251-325 3
AE0251-327 2 3
AE0251-329 2 3
AE0251-330 2 6
AE0251-331 2 3
AE0251-342 3 6
AE0251-343 2 3
AE0406-239 2 6
AE0406-254 2 6
AE0406-258 2 6
AE0406-259 2 6
AE0406-263 2 6
AE0406-264 2 6
AE0406-266 2 6
AE0406-271 2
AE0406-274 2 6
AE0406-278 2 6
AE0406-281 2 6
AE0406-286 2 6
AE0406-288 2 6
AE0406-289 2 6
AE0406-294 2 6
AE0406-298 2 6
Minneiska 2 6
NJ 303955 6
PRI 612-1 5
Arlet 2 6
Co-op 39 13 14
Pinova 2 4
Scired 3 6
Scifresh 3 4
0409-0025 2 6
0409-0026 2 5
0409-0027 2 6
0409-0031 2 6
0409-0033 2 5
0409-0047 2 6
G-14-050 2 6
G-14-052 2 6
G-14-054 4 6
G-14-055 4 6
G-14-056 2 6
G-14-057 4 6
G-14-059 4 6
G-14-060 2 6
G-14-061 4 6
G-14-062 2
G-14-064 2 4
G-14-065 2 6
G-14-069 2 6
G-14-067 2
G-14-068 2
G-14-071 2
G-14-073 4 6
G-14-074 2
G-14-075 2 4
G-14-076 2 4
G-14-077 2 6
G-14-078 2
G-14-080 4 6
G-09-232 4
G-09-233 4 5
G-09-234 4
G-09-235 3 5
G-09-236 3 4
G-09-237 3 4
G-09-238 3 5
G-09-239 3 4
G-09-240 3 4
G-09-241 4 5
G-09-242 3 4
G-09-243 3 4
G-09-245 3 4
G-09-246 4
G-09-258 4
G-09-259 3 4
G-09-260 3 5
G-09-261 4
G-09-262 3 5
G-09-263 3 4
G-09-264 3 4
G-09-265 4 5
G-09-266 4
G-09-267 3 5
G-09-268 3 5
0408-0021 5
Wijcik McIntosh 13 14
Priam 5 6
Northern Spy 2
Co-op 15 3 5
MN 1702 3 6
WA 2 5 6
WA 5 3 5
Pitmaston Pineapple 4 5
0411-0011 6
0411-0017 5 6
0411-0023 5 6
AE0250-086 3 6
AE0250-087 3 6
AE0250-089 3
AE0250-090 2 3
AE0250-092 3
AE0250-093 2 6
AE0250-094 3 6
AE0250-095 2 3
Sonya 5 6
Co-op 38 2 5
AE0250-096 2 3
AE0250-327 3 6
Co-op 30 5 6
Jonagrimes 2 4
AE0211-036 4 6
G-07-039 3 6
PRI 14-152 3 6
PRI 47-176 6
G-07-041 3
BC-8S-27-43 3 6
AE0250-091 2 3
AE0250-097 2 3
AE0250-325 2 5
AE0250-326 2 3
AE0250-329 2 3
AE0250-333 2 5
AE0250-334 2 5
AE0250-335 2 3
AE0250-336 2 3
AE0250-338 2 5
AE0250-341 2 3
AE0211-045 3
AE0211-051 3
G-07-010 2 7
G-07-014 2 7
G-07-015 2 3
G-07-019 2 3
G-07-020 2 3
G-07-024 2 3
G-07-032 3 7
G-07-033 3
G-07-035 3 7
G-07-044 2 7
AE0211-053 2 3
AE0211-054 3 6
AE0250-088 2 6
AE0250-324 2 6
AE0250-328 2 6
AE0250-331 2 6
AE0250-332 2 6
AE0250-337 2
AE0250-339 2
Minnewashta 2 6
Autumn Crisp 2 6
G-14-066 2
Lu1-11-010 3 6
Lu1-11-013 3
Lu1-11-016 3
Lu1-11-017 3
Lu1-11-018 2 3
NJ 90 2 3
Lord Lambourne 6
Antonovka GH 2 5
Grimes Golden 2
Kidds Orange Red 4 6
Malus baccata Hansen #2 8
Malus baccata Jackii 8
Summerred 2 5
William's Pride 2
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-02-7Apple-RosBREED-3.9K-201925.335.33
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Haplotypes
Marker 234567891011121314151617181920212223242526
GDsnp01641BABBBAB--BBAB--AABBBAAABA
RosBREEDSNP_SNP_AG_3463154_Lg2_01641_MAF30_MDP0000943030_exon1BAAAAAAAABAABB-A-BA--BBAA
RosBREEDSNP_SNP_CT_3420282_Lg2_01641_MAF40_1669340_exon1BBAABA-----BB-B-BBA--BBBA
RosBREEDSNP_SNP_GA_3428296_Lg2_01641_MAF50_MDP0000244230_exon9BABABBBAB--BAB-A---BABAAA
Alignments
Feature NameTypeLocationAnalysis
Chr02 chromosome Chr02:2796809..2840151. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation