Mdo-HB-02-64

Haplotype Block Overview
Name Mdo-HB-02-64
Species Malus x domestica
Stock Haplotype [view all 427]
Haplotype [view all]
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 5
Rome Beauty Law 4 5
Jonafree 4 5
Redfree 4
Spartan 4 5
Wagener 5
Worcester Pearmain 5
Tsugaru 4 7
Golden Delicious 4 5
Fuji 4
Empire 4 8
Gala 4 5
Honeycrisp 4 7
Marshall McIntosh 5 8
Cripps Pink 5 7
Granny Smith 4 7
Jonathan 4 7
Ralls Janet 4
Delicious 4
Discovery 5
Prima 4
Fiesta 4 5
Ingrid Marie 4 5
Idared 4 5
Esopus Spitzenburg 4
Braeburn 4 5
Sansa 4 5
Lodi 4
James Grieve 4 5
Cripps Red 4 7
Burgundy 4
Akane 5 7
Ambrosia 4
Aurora Golden Gala 4
Beacon 16 8
Ben Davis 4
Cameo 4 5
Chinook 4 5
Clivia 4 5
Co-op 17 4 5
Co-op 18 22 23
Dayton 4 5
Delblush 4 5
Delorgue 4 5
Dolgo 18 4
Geheimrat Dr. Oldenburg 4 5
Duchess of Oldenburg 4
Early Cortland 4 8
Empress 4 5
F2 26829-2-2 4 5
Fantazja 4 5
Fireside 4
Fortune 4 5
Frostbite 4 7
Ginger Gold 4
GMAL 4327 4
GMAL 4328 4
GMAL 4329 4
GMAL 4332 4
Goodland 4 5
Haralson 4 5
Honeygold 4 5
Hudson 4
Jersey Black 4
Jonamac 4 5
Keepsake 5 7
Kerr 4 5
Lady Williams 7 8
Liberty 4
Linda 4
Liveland Raspberry 4 5
Longfield 4
Macoun 4 8
Malinda 5
Melba 4 5
Melrose 4 7
MN 1628 5 7
MN 1691 4 5
MN 1706 4
MN 1708 4 7
MN 1760 4 5
MN 1764 4 7
MN 1789 4 5
MN 1802 5 7
MN 1836 4 5
MN 1837 4 5
MN 1839 4
MN 1888 4
MN 1899 4 5
MN 1940 4 5
MN 2016 4 5
AA-44 4 7
Monroe 4 7
Montgomery 4
Nicola 4
NJ 31 5
NJ 53 19 20
Oriole 4 5
PRI 14-126 4
PRI 14-510 4 5
PRI 1661-2 4 5
PRI 54-12 4 5
PRI 855-102 4
Primula 4
Raritan 4
Regent 5
Rubin 5
Russian Seedling 4
Sawa 4 5
Sciros 4 5
Sharon 4 8
Silken 4 5
Wildung 4 8
Splendour 4
State Fair 4
NJ 55 5
Co-op 29 4
Sunrise 5
Sweet Sixteen 4 7
Topaz 5
Vanda 5
Vista Bella 19 4
Wealthy 4 7
Winesap 4
Winter Banana 22 23
Yellow Newtown 4
Yellow Transparent 4
0407-0001 4 5
0407-0005 4 5
0407-0006 4 5
0407-0007 4 5
0407-0008 4 5
0408-0003 4 7
0408-0004 4 5
0408-0005 4 7
0408-0007 4 5
0408-0008 4 7
0408-0010 4 5
0408-0011 4 5
0408-0014 4 5
0408-0015 4 7
0409-0022 4
0409-0024 4
0409-0028 4 7
0409-0030 4
0409-0032 4
0409-0035 4 7
0409-0036 4
0409-0038 4 7
0409-0039 4 7
0409-0040 4 7
0409-0043 4 7
0409-0045 4
0410-0002 4
0410-0003 4 7
0410-0005 4
0410-0006 4 7
0410-0010 4
0410-0011 4 7
0410-0012 4 7
0410-0013 4 7
0410-0015 4
0410-0017 4 7
0410-0018 4 7
0414-0010 5 7
0414-0015 4 7
0414-0017 4
0414-0018 7
0414-0019 4 5
0414-0020 7
0414-0021 4 7
0415-0001 5 7
0415-0004 4 7
0415-0005 7
0415-0011 4 7
0415-0012 4 7
0415-0013 4 5
0415-0014 4 5
0415-0016 4 7
0415-0017 7
0415-0019 4 7
0415-0020 7
0415-0025 7
AE_HCxJonf-145 4
AE_HCXJonf-148 4 5
AE_HCXJonf-162 4 7
AE_HCXJonf-168 4 7
AE_HCxJonf-175 5 7
AE_HCxJonf-183 5 7
AE_HCxJonf-185 4 7
AE0118-237 5 7
AE0118-238 4 5
AE0118-239 4
AE0118-240 5 7
AE0118-243 4 5
AE0118-244 4 5
AE0118-245 4 5
AE0118-246 5 7
AE0118-249 5 7
AE0206-159 4 5
AE0206-160 4 5
AE0206-161 4
AE0206-162 4
AE0206-163 4
AE0206-164 4
AE0206-165 4 5
AE0206-167 4 5
AE0206-168 4
AE0206-169 4 5
AE0206-170 4
AE0210-146 4 5
AE0210-147 4 5
AE0210-149 4 5
AE0210-150 4 5
AE0210-151 4 5
AE0210-152 4 5
AE0210-153 4 5
AE0210-154 4 5
AE0210-157 4 5
AE0210-158 4 5
AE0210-159 4 5
AE0210-162 4 5
AE0210-163 4 5
AE0210-164 4 5
AE0210-165 4 5
AE0210-166 4 5
AE0210-168 4 5
AE0210-169 4 5
AE0210-170 4 5
AE0210-171 4 5
AE0210-172 4 5
AE0210-173 4 5
AE0210-174 4 5
AE0213-175 4
AE0213-176 4
AE0213-177 4
AE0213-178 4
AE0213-179 4
AE0213-180 4
AE0213-181 4
AE0213-182 4
AE0213-183 4
AE0213-186 4
AE0213-187 4
AE0213-190 4
AE0213-193 4
AE0213-194 4
AE0213-195 4
AE0213-196 4
AE0213-197 4
AE0213-198 4
AE0213-199 4
AE0213-200 4
AE0213-201 4
AE0213-202 4
AE0213-205 4
AE0213-206 4
AE0251-323 4 7
AE0251-327 4 7
AE0251-329 4 7
AE0251-330 4
AE0251-331 4
AE0251-342 4 7
AE0251-343 4 7
AE0406-239 4
AE0406-254 4
AE0406-258 4
AE0406-259 4
AE0406-263 4 7
AE0406-264 4
AE0406-266 4
AE0406-271 4
AE0406-274 4
AE0406-278 4 7
AE0406-281 4
AE0406-286 4 5
AE0406-288 4
AE0406-289 4
AE0406-294 4 7
AE0406-298 4 5
Minneiska 5 7
NJ 303955 5
PRI 612-1 4
Arlet 4 5
Co-op 39 22 23
Pinova 4 5
Scired 4
Scifresh 5
0409-0025 4 7
0409-0026 4 7
0409-0027 4
0409-0031 4 7
0409-0033 4
0409-0047 4
G-14-050 4 5
G-14-052 4 5
G-14-054 4
G-14-055 4
G-14-056 4
G-14-057 4 5
G-14-059 4
G-14-060 4 5
G-14-061 4 5
G-14-062 4
G-14-064 4
G-14-065 4 5
G-14-069 4
G-14-067 4
G-14-068 4 5
G-14-071 4 5
G-14-073 4
G-14-074 4 5
G-14-075 4
G-14-076 4 5
G-14-077 4
G-14-078 4 5
G-14-080 4 5
G-09-232 4 5
G-09-233 4 5
G-09-234 4 5
G-09-235 4 5
G-09-236 4 5
G-09-237 4
G-09-238 4
G-09-239 4
G-09-240 4
G-09-241 4
G-09-242 4
G-09-243 4
G-09-245 4 5
G-09-246 4 5
G-09-258 4
G-09-259 4 5
G-09-260 4 5
G-09-261 4
G-09-262 4 5
G-09-263 4
G-09-264 4 5
G-09-265 4 5
G-09-266 4 5
G-09-267 4
G-09-268 4 5
0408-0021 4 7
Wijcik McIntosh 20 23
Beauty of Bath 21 5
Priam 4 7
Northern Spy 4 5
Co-op 15 4 5
MN 1702 4
WA 2 4 5
WA 5 4 5
Pitmaston Pineapple 5
0411-0011 5 7
0411-0017 5 7
0411-0023 5 7
AE0250-086 4 7
AE0250-087 4 7
AE0250-089 4 7
AE0250-090 4 7
AE0250-092 4 7
AE0250-093 4 7
AE0250-094 4 7
AE0250-095 4 7
Sonya 4 5
Co-op 38 5
AE0250-096 4 5
AE0250-327 4 5
Co-op 30 5 7
Jonagrimes 2 4
AE0211-036 4
G-07-039 4
PRI 14-152 4
PRI 47-176 5 7
G-07-041 4 5
BC-8S-27-43 4
AE0250-091 4
AE0250-097 4
AE0250-325 4 7
AE0250-326 4
AE0250-329 4 7
AE0250-333 4
AE0250-334 4 7
AE0250-335 4 7
AE0250-336 4 7
AE0250-338 4 7
AE0250-341 4
AE0211-038 4
AE0211-043 4
AE0211-045 4
AE0211-051 4
G-07-010 5 7
G-07-014 4 5
G-07-015 4 7
G-07-019 4
G-07-020 5 7
G-07-024 4
G-07-032 4 5
G-07-033 5 7
G-07-034 5 7
G-07-035 4 5
G-07-044 4 7
AE0211-053 4
AE0211-054 4 5
AE0250-088 4 7
AE0250-324 4 7
AE0250-328 5 7
AE0250-331 4 5
AE0250-332 4 7
AE0250-337 5 7
AE0250-339 4 5
Minnewashta 4 5
Autumn Crisp 4
G-14-066 4
Lu1-11-010 4 5
Lu1-11-013 4 5
Lu1-11-016 4 5
Lu1-11-017 4 5
Lu1-11-018 4 5
NJ 90 4 5
Lord Lambourne 5
Antonovka GH 4
Grimes Golden 2 4
Kidds Orange Red 4 5
Malus baccata Hansen #2 8
Malus baccata Jackii 8
Summerred 4 9
William's Pride 4
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-02-64Apple-RosBREED-3.9K-2019262.6162.61
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Haplotypes
Marker 23456789101112131415161718192021222324252627282930
GDsnp02535BAAB-BABB----BBBAABABA-----B-
RosBREEDSNP_SNP_CA_40085225_Lg2_02535_MAF40_MDP0000320988_exon20ABBA-BB-BBBBA-AABAB-BABA--B-A
RosBREEDSNP_SNP_CT_40079809_Lg2_02535_MAF50_1678854_exon4ABBA-AAAA-BAAABBABABBA--B--A-
RosBREEDSNP_SNP_TC_40082868_Lg2_02535_MAF20_MDP0000320988_exon27--AAABAA--ABA-A--AAAAAAAABBB-
Alignments
Feature NameTypeLocationAnalysis
Chr02 chromosome Chr02:37532890..37543196. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation