Mdo-HB-02-63

Haplotype Block Overview
Name Mdo-HB-02-63
Species Malus x domestica
Stock Haplotype [view all 427]
Haplotype [view all]
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 20 23
Rome Beauty Law 12 4
Jonafree 4 5
Redfree 4
Spartan 12 4
Wagener 19 5
Worcester Pearmain 10 8
Tsugaru 4 8
Golden Delicious 4 5
Fuji 4
Empire 11 4
Gala 20 4
Honeycrisp 4 8
Elstar 23 4
Marshall McIntosh 11 12
Cripps Pink 5 8
Granny Smith 4 8
Jonathan 4 8
Ralls Janet 10 4
Delicious 4
Discovery 8
Prima 4
Fiesta 23 4
Ingrid Marie 23 4
Idared 4 5
Esopus Spitzenburg 4
Braeburn 4 8
Sansa 4 8
Lodi 4
James Grieve 20 4
Cripps Red 4 8
Burgundy 4
Akane 8
Ambrosia 4
Aurora Golden Gala 4
Beacon 34 8
Ben Davis 4
Cameo 4 5
Chinook 20 4
Clivia 23 4
Co-op 17 11 12
Co-op 18 4 5
Dayton 12 4 5
Delblush 4 5
Delcorf 36 6
Delorgue 6 8
Dolgo 28
Geheimrat Dr. Oldenburg 4 8
Duchess of Oldenburg 4 6
Early Cortland 11 4
Empress 12 4
F2 26829-2-2 12 4
Fantazja 12 4
Fireside 4
Fortune 4 5
Frostbite 4 8
Ginger Gold 4
GMAL 4327 4
GMAL 4328 4
GMAL 4329 4
GMAL 4332 4
Goodland 12 6
Haralson 23 4
Honeygold 23 4
Hudson 4
Jonamac 12 4
Keepsake 5 8
Kerr 23 28
Lady Williams 6 8
Liberty 4 8
Linda 4
Liveland Raspberry 23 4
Longfield 4
Macoun 11 8
Malinda 23 8
Melba 12 4
Melrose 4 8
MN 1627 4
MN 1628 5 8
MN 1691 12 4
MN 1706 4
MN 1708 4 8
MN 1760 4 5
MN 1764 4 8
MN 1789 12 4
MN 1802 12 8
MN 1836 4 5
MN 1837 12 4
MN 1839 4
MN 1888 4
MN 1899 12 4
MN 1940 12 4
MN 2016 4 5
AA-44 4 8
Monroe 4 8
Montgomery 11 4
Nicola 4
NJ 31 5
NJ 53 12 4
Oriole 23 4
PRI 14-126 4
PRI 14-510 12 4
PRI 1661-2 12 4
PRI 54-12 12 4
PRI 855-102 4
Primula 4
Raritan 4
Regent 12 23
Rubin 5
Russian Seedling 4 42
Sawa 12 4
Sciros 20 4
Sharon 11 4
Silken 12 4
Wildung 11 4
Splendour 4
State Fair 4
NJ 55 23 5
Co-op 29 4
Sunrise 12
Sweet Sixteen 4 8
Topaz 20 5
Vanda 20
Vista Bella 4
Wealthy 4 8
Winesap 4 9
Winter Banana 42 44
Yellow Newtown 11 25
Yellow Transparent 4
0407-0001 4 5
0407-0005 4 5
0407-0006 4 5
0407-0007 4 5
0407-0008 4 5
0408-0003 4 8
0408-0004 12 4
0408-0005 4 8
0408-0007 12 4
0408-0008 4 8
0408-0010 12 4
0408-0011 12 4
0408-0014 12 4
0408-0015 4 8
0409-0022 4
0409-0024 4
0409-0028 4 8
0409-0030 4
0409-0032 4
0409-0035 4 8
0409-0036 4
0409-0038 4 8
0409-0039 4 8
0409-0040 4 8
0409-0043 4 8
0409-0045 4
0410-0002 4
0410-0003 4 8
0410-0005 4
0410-0006 4 8
0410-0010 4
0410-0011 4 8
0410-0012 4 8
0410-0013 4 8
0410-0015 4
0410-0017 4 8
0410-0018 4 8
0414-0010 5 8
0414-0015 5 8
0414-0017 4
0414-0018 8
0414-0019 4 5
0414-0020 8
0414-0021 4 8
0415-0001 12 8
0415-0004 4 8
0415-0005 8
0415-0011 4 8
0415-0012 4 8
0415-0013 12 4
0415-0014 23 4
0415-0016 4 8
0415-0017 12 8
0415-0019 4 8
0415-0020 8
0415-0025 8
AE_HCxJonf-145 4
AE_HCXJonf-148 4 5
AE_HCXJonf-162 4 8
AE_HCXJonf-168 4 8
AE_HCxJonf-175 5 8
AE_HCxJonf-183 5 8
AE_HCxJonf-185 4 8
AE0118-237 23 8
AE0118-238 23 4
AE0118-239 4
AE0118-240 12 8
AE0118-243 23 4
AE0118-244 12 4
AE0118-245 12 4
AE0118-246 23 8
AE0118-249 12 8
AE0206-159 12 4
AE0206-160 12 4
AE0206-161 4
AE0206-162 4
AE0206-163 4
AE0206-164 4
AE0206-165 12 4
AE0206-167 12 4
AE0206-168 4
AE0206-169 12 4
AE0206-170 4
AE0210-146 12 4
AE0210-147 12 4
AE0210-149 12 4
AE0210-150 12 4
AE0210-151 12 4
AE0210-152 12 4
AE0210-153 12 4
AE0210-154 12 4
AE0210-157 12 4
AE0210-158 12 4
AE0210-159 12 4
AE0210-162 12 4
AE0210-163 12 4
AE0210-164 12 4
AE0210-165 12 4
AE0210-166 12 4
AE0210-168 12 4
AE0210-169 12 4
AE0210-170 12 4
AE0210-171 12 4
AE0210-172 12 4
AE0210-173 12 4
AE0210-174 12 4
AE0213-175 4
AE0213-176 4
AE0213-177 4
AE0213-178 4
AE0213-179 4
AE0213-180 4
AE0213-181 4
AE0213-182 4
AE0213-183 4
AE0213-186 4
AE0213-187 4
AE0213-190 4
AE0213-193 4
AE0213-194 4
AE0213-195 4
AE0213-196 4
AE0213-197 4
AE0213-198 4
AE0213-199 4
AE0213-200 4
AE0213-201 4
AE0213-202 4
AE0213-205 4
AE0213-206 4
AE0251-323 4 8
AE0251-327 4 8
AE0251-329 4 8
AE0251-330 4
AE0251-331 4
AE0251-342 4 8
AE0251-343 4 8
AE0406-239 4
AE0406-254 4
AE0406-258 4
AE0406-259 4
AE0406-263 4 8
AE0406-264 4
AE0406-266 4
AE0406-271 4
AE0406-274 4
AE0406-278 4 8
AE0406-281 4
AE0406-286 12 4
AE0406-288 4
AE0406-289 4
AE0406-294 4 8
AE0406-298 12 4
Minneiska 12 8
NJ 303955 23
PRI 612-1 4
Arlet 4 5
Co-op 39 12 4
Pinova 4 5
Scired 4
Scifresh 20 8
0409-0025 4 8
0409-0026 4 8
0409-0027 4
0409-0031 4 8
0409-0033 4
0409-0047 4
G-14-050 4 5
G-14-052 4 5
G-14-054 4
G-14-055 4
G-14-056 4
G-14-057 4 5
G-14-059 4
G-14-060 4 5
G-14-061 4 5
G-14-062 4
G-14-064 4
G-14-065 4 5
G-14-069 4
G-14-067 4
G-14-068 4 5
G-14-071 4 5
G-14-073 4
G-14-074 4 5
G-14-075 4
G-14-076 4 5
G-14-077 4
G-14-078 4 5
G-14-080 4 5
G-09-232 4 8
G-09-233 4 8
G-09-234 4 8
G-09-235 4 8
G-09-236 4 8
G-09-237 4
G-09-238 4
G-09-239 4
G-09-240 4
G-09-241 4
G-09-242 4
G-09-243 4
G-09-245 4 8
G-09-246 4 8
G-09-258 4
G-09-259 4 8
G-09-260 4 8
G-09-261 4
G-09-262 4 8
G-09-263 4
G-09-264 4 8
G-09-265 4 8
G-09-266 4 8
G-09-267 4
G-09-268 4 8
0408-0021 4 8
Wijcik McIntosh 41 43
Priam 4 8
Northern Spy 4 5
Co-op 15 12 4
MN 1702 4
WA 2 20 4
WA 5 4
Pitmaston Pineapple 20 8
0411-0011 5 8
0411-0017 5 8
0411-0023 5 8
AE0250-086 4 8
AE0250-087 4 8
AE0250-089 4 8
AE0250-090 4 8
AE0250-092 4 8
AE0250-093 4 8
AE0250-094 4 8
AE0250-095 4 8
Sonya 4 8
Co-op 38 12 5
AE0250-096 4 5
AE0250-327 4 5
Co-op 30 12 8
Jonagrimes 2 6
AE0211-036 4
G-07-039 4
PRI 14-152 4
PRI 47-176 12 8
G-07-041 4 8
BC-8S-27-43 4
AE0250-091 4
AE0250-097 4
AE0250-325 4 8
AE0250-326 4
AE0250-329 4 8
AE0250-333 4
AE0250-334 4 8
AE0250-335 4 8
AE0250-336 4 8
AE0250-338 4 8
AE0250-341 4
AE0211-038 4
AE0211-043 4
AE0211-045 4
AE0211-051 4
G-07-010 4 8
G-07-014 4 8
G-07-015 4 8
G-07-020 8
G-07-024 4
G-07-032 4 8
G-07-033 8
G-07-034 8
G-07-035 4 8
G-07-044 4 8
AE0211-053 4
AE0211-054 12 4
AE0250-088 4 8
AE0250-324 4 8
AE0250-328 12 8
AE0250-331 12 4
AE0250-332 4 8
AE0250-337 12 8
AE0250-339 4
Minnewashta 12 4
Autumn Crisp 4
G-14-066 4
Lu1-11-010 4 5
Lu1-11-013 12 4
Lu1-11-016 12 4
Lu1-11-017 12 4
Lu1-11-018 4 5
NJ 90 12 4
Lord Lambourne 20 8
Antonovka GH 4
Grimes Golden 2 4
Kidds Orange Red 20 4
Malus baccata Hansen #2 43
Malus baccata Jackii 11 43
Summerred 4 5
William's Pride 4
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-02-63Apple-RosBREED-3.9K-2019262.5562.55
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Haplotypes
Marker 234567891011121314151617181920212223242526272829303132333435363738394041424344454647
GDsnp00167BAABAAAAAAA-------A-AA-AABA--AAAA--A-AAAAAAAA-
RosBREEDSNP_SNP_AG_39576068_Lg2_00167_MAF10_775044_exon1AAAAAAAAAAAAAA--BBBAABAAAAAAAAAAB--BBBBABAA--B
RosBREEDSNP_SNP_CT_39558990_Lg2_00167_MAF30_MDP0000471340_exon1--BBA-B--BABA---AAABBABBBBBBA-B-AABA--BBBAABBA
RosBREEDSNP_SNP_GA_39526012_Lg2_00167_MAF50_1641137_exon4ABBAA-AAAAAAA-ABAAAA-ABB-----BAAB----ABAAABBA-
RosBREEDSNP_SNP_TC_39523918_Lg2_00167_MAF40_521654_exon1BAABB-BBAABAA---BBBB-BABBBA--B-BA--B-BABAABAB-
RosBREEDSNP_SNP_TC_39549680_Lg2_00167_MAF30_361462_exon1AAAAAAAAAABAA---BABAAAAAAAAABAABA--A-BABAAAAAB
Alignments
Feature NameTypeLocationAnalysis
Chr02 chromosome Chr02:36968058..37017220. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation