Mdo-HB-02-61

Haplotype Block Overview
Name Mdo-HB-02-61
Species Malus x domestica
Stock Haplotype [view all 419]
Haplotype [view all]
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 5
Rome Beauty Law 10 11
Jonafree 4 5
Redfree 11
Spartan 10 11
Wagener 10 5
Worcester Pearmain 22 5
Tsugaru 12 4
Golden Delicious 4 5
Fuji 11 4
Empire 11 4
Gala 4 5
Honeycrisp 10 11
Elstar 4 5
Marshall McIntosh 10 4
Cripps Pink 12 5
Granny Smith 11 12
Jonathan 12 4
Ralls Janet 4
Delicious 11
Discovery 4 5
Prima 20 4
821 13
Fiesta 4 5
Ingrid Marie 11 5
Idared 4 5
Esopus Spitzenburg 4
Braeburn 11 12
Sansa 4 5
Lodi 11 4
James Grieve 4 5
Cripps Red 12 4
Burgundy 11 20
Akane 12 5
Ambrosia 11 4
Aurora Golden Gala 11 4
Beacon 11 23
Ben Davis 11 4
Cameo 11 5
Chinook 4 5
Clivia 11 5
Co-op 17 10 13
Co-op 18 4 5
Dayton 10 11 13 5
Delblush 11 5
Delorgue 20 5
Dolgo 11 13
Geheimrat Dr. Oldenburg 11 12
Duchess of Oldenburg 11 7
Early Cortland 11 4
Empress 10 13
F2 26829-2-2 10 11
Fantazja 10 11
Fireside 11 4
Fortune 4 5
Frostbite 10 11
Ginger Gold 11 4
GMAL 4327 11
GMAL 4328 11 4
GMAL 4329 4
GMAL 4332 20 4
Goodland 10 13
Haralson 10 11
Honeygold 10 4
Hudson 11
Jonamac 10 4
Keepsake 10 5
Kerr 10 13
Lady Williams 10 12
Liberty 10 11
Linda 11 4
Liveland Raspberry 10 7
Longfield 11
Malinda 10
Mantet 11
Melba 10 7
Melrose 11 12
MN 1628 10 5
MN 1691 10 11
MN 1706 11 13
MN 1708 10 11
MN 1760 11 5
MN 1764 11 12
MN 1789 10 11
MN 1802 10
MN 1836 11 5
MN 1837 10 11
MN 1839 11 4
MN 1888 11
MN 1899 10 11
MN 1940 10 13
MN 2016 11 5
AA-44 11 12
Monroe 11 12
Montgomery 13 4
Nicola 4
NJ 31 5
NJ 53 10 11
Oriole 10 11
PRI 14-126 11 4
PRI 14-510 10 4
PRI 1661-2 10 11
PRI 54-12 10 11
PRI 855-102 4
Primula 4 7
Raritan 11
Regent 10
Rubin 5
Russian Seedling 4
Sawa 10 4
Sciros 11 5
Sharon 11 4
Silken 10 4
Wildung 4
Splendour 11 4
State Fair 11
NJ 55 4 5
Co-op 29 11 4
Sunrise 10
Sweet Sixteen 10 11
Topaz 5
Vanda 5
Vista Bella 11 13
Wealthy 11 12
Winesap 10 11
Winter Banana 11 5
Yellow Newtown 11 5
Yellow Transparent 11 20
0407-0001 4 5
0407-0005 11 5
0407-0006 11 5
0407-0007 11 5
0407-0008 11 5
0408-0003 12 4
0408-0004 10 11
0408-0005 11 12
0408-0007 10 11
0408-0008 12 4
0408-0010 10 11
0408-0011 10 4
0408-0014 10 4
0408-0015 12 4
0409-0022 11 4
0409-0024 11 4
0409-0028 10 4
0409-0030 11
0409-0032 11
0409-0035 10 4
0409-0036 11
0409-0038 10 11
0409-0039 10 4
0409-0040 10 4
0409-0043 10 11
0409-0045 11
0410-0002 11 4
0410-0003 11 12
0410-0005 11
0410-0006 11 12
0410-0010 11 4
0410-0011 11 12
0410-0012 12 4
0410-0013 12 4
0410-0015 11 4
0410-0017 12 4
0410-0018 11 12
0414-0010 10 5
0414-0015 10 5
0414-0017 11 5
0414-0018 10 12
0414-0019 11 5
0414-0020 10 12
0414-0021 10 4
0415-0001 10
0415-0004 11 12
0415-0005 10 12
0415-0011 11 12
0415-0012 11 12
0415-0013 10 11
0415-0014 11 5
0415-0016 11 12
0415-0017 10
0415-0019 11 12
0415-0020 10 12
0415-0025 10 12
AE_HCxJonf-145 11 4
AE_HCXJonf-148 11 5
AE_HCXJonf-162 10 4
AE_HCXJonf-168 10 4
AE_HCxJonf-175 11 5
AE_HCxJonf-183 10 5
AE_HCxJonf-185 10 4
AE0118-237 10
AE0118-238 10 11
AE0118-239 11
AE0118-240 10
AE0118-243 10 11
AE0118-244 10 11
AE0118-245 10 11
AE0118-246 10
AE0118-249 10
AE0206-159 10 4
AE0206-160 10 4
AE0206-161 11 4
AE0206-162 11 4
AE0206-163 11 4
AE0206-164 11 4
AE0206-165 10 4
AE0206-167 10 4
AE0206-168 11 4
AE0206-169 10 4
AE0206-170 11 4
AE0210-146 10 4
AE0210-147 10 4
AE0210-149 10 4
AE0210-150 10 4
AE0210-151 10 4
AE0210-152 10
AE0210-153 10 4
AE0210-154 10 4
AE0210-157 10 4
AE0210-158 10 4
AE0210-159 10 4
AE0210-162 10 4
AE0210-163 10 4
AE0210-164 10 4
AE0210-165 10 4
AE0210-166 10 4
AE0210-168 10 4
AE0210-169 10 4
AE0210-170 10 4
AE0210-171 10 4
AE0210-172 10 4
AE0210-173 10 4
AE0210-174 10 4
AE0213-175 4
AE0213-176 4
AE0213-178 11 4
AE0213-183 20 4
AE0213-186 4
AE0213-187 4
AE0213-193 20 4
AE0213-194 20 4
AE0213-195 11 4
AE0213-196 11 4
AE0213-197 4
AE0213-198 4
AE0213-199 4
AE0213-200 20 4
AE0213-202 20 4
AE0213-206 11 4
AE0251-323 10 4
AE0251-327 10 4
AE0251-329 10 4
AE0251-330 11 4
AE0251-331 11 4
AE0251-342 10 4
AE0251-343 10 4
AE0406-239 11 4
AE0406-254 11 4
AE0406-258 11 4
AE0406-259 11 4
AE0406-263 10 4
AE0406-264 11 4
AE0406-266 11 4
AE0406-271 11 4
AE0406-274 11 4
AE0406-278 10 4
AE0406-281 11 4
AE0406-286 10 11
AE0406-288 11 4
AE0406-289 11 4
AE0406-294 10 4
AE0406-298 10 11
Minneiska 10
NJ 303955 5
PRI 612-1 11 4
Arlet 4 5
Co-op 39 10 11
Pinova 11 5
Scired 11 4
Scifresh 12 5
0409-0025 10 4
0409-0026 10 4
0409-0027 11
0409-0031 10 11
0409-0033 11 4
0409-0047 11 4
G-14-050 11 5
G-14-052 11 5
G-14-054 11 4
G-14-055 11 4
G-14-056 11 4
G-14-057 11 5
G-14-059 11
G-14-060 4 5
G-14-061 11 5
G-14-062 11
G-14-064 11
G-14-065 11 5
G-14-069 11
G-14-067 11
G-14-068 11 5
G-14-071 4 5
G-14-073 11
G-14-074 4 5
G-14-075 11
G-14-076 4 5
G-14-077 11
G-14-078 11 5
G-14-080 4 5
G-09-232 12 4
G-09-233 11 12
G-09-234 12 4
G-09-235 12 4
G-09-236 12 4
G-09-237 11 4
G-09-238 11
G-09-239 11 4
G-09-240 11 4
G-09-241 11 4
G-09-242 11
G-09-243 11 4
G-09-245 11 12
G-09-246 11 12
G-09-258 11
G-09-259 11 12
G-09-260 11 12
G-09-261 11
G-09-262 12 4
G-09-263 11 4
G-09-264 12 4
G-09-265 12 4
G-09-266 11 12
G-09-267 11
G-09-268 11
0408-0021 11 12
Wijcik McIntosh 10 4
Beauty of Bath 4
Priam 12 4
Northern Spy 11 5
Co-op 15 10 4
MN 1702 11 4
WA 2 4 5
WA 5 11 4
Pitmaston Pineapple 12 5
0411-0011 12 5
0411-0017 12 5
0411-0023 12 5
AE0250-086 10 4
AE0250-087 10 4
AE0250-089 10 4
AE0250-090 10 4
AE0250-092 10 4
AE0250-093 10 4
AE0250-094 10 4
AE0250-095 10 4
Sonya 12 4
Co-op 38 10 5
AE0250-096 11 5
AE0250-327 11 5
Co-op 30 10 12
AE0211-036 11 4
G-07-039 11 4
PRI 14-152 11 4
PRI 47-176 10 12
G-07-041 4 5
BC-8S-27-43 4
AE0250-091 11
AE0250-097 11
AE0250-325 10 11
AE0250-326 11
AE0250-329 10 11
AE0250-333 11
AE0250-334 10 11
AE0250-335 10 11
AE0250-336 10 11
AE0250-338 10 11
AE0250-341 11
AE0211-038 4
AE0211-043 11 4
AE0211-045 11 4
AE0211-051 11 4
G-07-010 12 4
G-07-014 11 5
G-07-015 12 4
G-07-019 11 4
G-07-020 12 5
G-07-024 11 4
G-07-032 11 5
G-07-033 12 5
G-07-034 12 5
G-07-035 11 5
G-07-044 12 4
AE0211-053 11 4
AE0211-054 10 4
AE0250-088 10 11
AE0250-324 10 11
AE0250-328 10
AE0250-331 10 11
AE0250-332 10 11
AE0250-337 10
AE0250-339 11
Minnewashta 10 11
Autumn Crisp 11 4
G-14-066 11 4
Lu1-11-010 4
Lu1-11-013 10 4
Lu1-11-016 10 4
Lu1-11-017 10 11
Lu1-11-018 4
NJ 90 10 11
Lord Lambourne 5
Antonovka GH 11 20
Grimes Golden 2 4
Kidds Orange Red 11 5
Malus baccata Hansen #2 13 4
Malus baccata Jackii 11 4
Summerred 11 2
William's Pride 11
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-02-61Apple-RosBREED-3.9K-2019261.4261.47
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Haplotypes
Marker 23456789101112131415161718192021222324252627282930313233
RosBREEDSNP_SNP_AG_38977655_Lg2_00995_MAF40_487282_exon1BAABAA--BAAA-BABABA-AB--BA--AABB
RosBREEDSNP_SNP_CT_38921890_Lg2_00995_MAF20_520403_exon1BBBB--ABAABBB-BBBBA-ABBA----AAAA
RosBREEDSNP_SNP_GA_38984202_Lg2_00995_MAF10_1659423_exon2--BBBABBBBBAAB-BBBAB-ABA--ABBBB-
RosBREEDSNP_SNP_TG_38924310_Lg2_00995_MAF20_MDP0000568968_exon3AAAAAAAAAABAAAB--BA-AA--AA-AB-BA
Alignments
Feature NameTypeLocationAnalysis
Chr02 chromosome Chr02:36319485..36393438. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation