RosBREED_Apple_CRS_Haplotype_2020

Project Overview

Project Name	RosBREED_Apple_CRS_Haplotype_2020
Description	The apple ‘Crop Reference Sets’, consisting of 421 individuals from three apple breeding programs (Washington State University, the University of Minnesota, and Cornell University), represents US breeding germplasm for the RosBREED project, were genotyped using the Illumina Infinium 8K apple SNP array and haplotypes were determined. The genotype calls of 18 additional apple individuals genotyped with the 20K SNP array in the FruitBreedomics project or genotyped with the 8K SNP array at KU Leuven, Belgium were added to the data set to complete genotypic data of key ancestors.
Crop	apple
Project type	genotype
Sub type	haplotype

Genetic Maps

This project contains 3 Maps:

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Stocks

This project contains 1,263 stocks:


Name	Type
Nova Easygro	accession
Jonafree	accession
Maigold	accession
Redfree	accession
Spartan	accession
Telamon	accession
Telamon_x_Braeburn-F1	population
Starkrimson_x_Granny Smith-F1	population
Golden Delicious_x_M floribunda 821-F1	population
Idared_x_U 211-F1	population
Fiesta_x_Discovery-F1	population
Tsugaru	accession
Jonagold	accession
Golden Delicious	accession
Fuji	accession
Empire	accession
Gala	accession
Honeycrisp	accession
Elstar	accession
Cripps Pink	accession
Florina	accession
Jonathan	accession
Pinova	accession
Orin	accession
Delicious	accession

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Publications


Year	Publication
2019	Vanderzande S, Howard NP, Cai L, Da Silva Linge C, Antanaviciute L, Bink MCAM, Kruisselbrink JW, Bassil N, Gasic K, Iezzoni A, Van de Weg E, Peace C. High-quality, genome-wide SNP genotypic data for pedigreed germplasm of the diploid outbreeding species apple, peach, and sweet cherry through a common workflow. PloS one. 2019; 14(6):e0210928.