PHYC

Marker Overview
NamePHYC
dbSNP IDN/A
SNP Array ID
Cherry 6+9K SNP array:PHYC
TypeSNP
SNP AllelesA/G
5' Flanking SequenceAGATATAATTGTTTGGAATTAAATAGAGATACCTCTTCTGGATTCTTTTT
3' Flanking SequenceTTTCCATCTCATGCATGTCAAGTAAGTGGAAATTACAGTTATGCATGTCA
SpeciesPrunus avium
Publication[view all]
ContactStijn Vanderzande
Commentsweet cherry SNPs from ESTs discovered by Castede et al (2015)
Contact
NameDetails
Stijn Vanderzande
First name:Stijn
Last name:Vanderzande
Address:Laboratory for Fruit Breeding and Biotechnology - Willem de Croylaan 42 - B-3001 Heverlee - Belgium
Country:Belgium
Email:stijn.vanderzande@wsu.edu
Libraries
Library NameType
Cherry 6+9K SNP arraySNP_chip
Relationships

The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
PHYCPHYCPrunus aviummarker_locus


Sequence
>PHYC ID=PHYC|Name=PHYC|organism=Prunus avium|type=genetic_marker|length=101bp
AGATATAATTGTTTGGAATTAAATAGAGATACCTCTTCTGGATTCTTTTT
RTTTCCATCTCATGCATGTCAAGTAAGTGGAAATTACAGTTATGCATGTC
A
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Sweet Cherry-RosBREED-3.8K-20203N/A60.34PHYCView
2Sweet Cherry-V-F1-6+9K_array3N/A39.29PHYCView
3Sweet Cherry-VxC-F1-6+9K_array3N/A68.96PHYCView
Alignments
Feature NameTypeLocationAnalysis
Pp03 chromosome Pp03:20802080..20802080. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)
PAV_r1.0chr3 chromosome PAV_r1.0chr3:14702905..14702905. Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)