VIM1_2

Marker Overview
NameVIM1_2
dbSNP IDN/A
SNP Array ID
Cherry 6+9K SNP array:VIM1_2
TypeSNP
SNP AllelesT/G
5' Flanking SequenceCCAGTTACAAAAACCTAAAATAAAATAACTTACATCAAAGTCCCAAGATG
3' Flanking SequenceACTTTGCGTCCTCTCTGTTATATCTGTGGCTTTCTTCAGCTCAGGAATAG
SpeciesPrunus avium
Publication[view all]
ContactStijn Vanderzande
Commentsweet cherry SNPs from ESTs discovered by Castede et al (2015)
Contact
NameDetails
Stijn Vanderzande
First name:Stijn
Last name:Vanderzande
Address:Laboratory for Fruit Breeding and Biotechnology - Willem de Croylaan 42 - B-3001 Heverlee - Belgium
Country:Belgium
Email:stijn.vanderzande@wsu.edu
Libraries
Library NameType
Cherry 6+9K SNP arraySNP_chip
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Sweet Cherry-RosBREED-3.8K-20205N/A34.6VIM1_2View
Sequence
>VIM1_2 ID=VIM1_2; Name=VIM1_2; organism=Prunus avium; type=genetic_marker; length=101bp
CCAGTTACAAAAACCTAAAATAAAATAACTTACATCAAAGTCCCAAGATG
KACTTTGCGTCCTCTCTGTTATATCTGTGGCTTTCTTCAGCTCAGGAATA
G
Alignments
Feature NameTypeLocationAnalysis
Pp05 chromosome Pp05:13125563..13125563. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)
PAV_r1.0chr5 chromosome PAV_r1.0chr5:11135136..11135136. Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)