scaffold_1:1313299

Marker Overview
Namescaffold_1:1313299
dbSNP IDN/A
SNP Array ID
Cherry 6+9K SNP array:scaffold_1:1313299
TypeSNP
SNP AllelesT/C
5' Flanking SequenceCTCGTATCAATTGCTTCCAACATTCTCACCACCTCACCCATTTCAGGACGTTTATTTGCA TTTGCGTCCCAGCACTTGCGCATGATGTTTGAAAAAGAACT
3' Flanking SequenceGGACAGCATCTGGGGATTTCTGGCCGTAAGTTCTGTTAACAAACCATATAGTACGTACAA TGAAACGCCCATGAAGAGTTAGATGTCAAATCTTCGACTAG
SpeciesPrunus avium
Publication[view all]
ContactStijn Vanderzande
Commentweet cherry SNPs identified by Peace et al (2012) that were not used for the original 6K SNP array - intragenic SNPs
Contact
NameDetails
Stijn Vanderzande
First name:Stijn
Last name:Vanderzande
Address:Laboratory for Fruit Breeding and Biotechnology - Willem de Croylaan 42 - B-3001 Heverlee - Belgium
Country:Belgium
Email:stijn.vanderzande@wsu.edu
Libraries
Library NameType
Cherry 6+9K SNP arraySNP_chip
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Sweet Cherry-V-F1-6+9K_array1N/A2.56scaffold_1:1313299View
2Sweet Cherry-RosBREED-3.8K-20201N/A5.62scaffold_1:1313299View
3Sweet Cherry-VxC-F1-6+9K_array1N/A6.74scaffold_1:1313299View
Sequence
>scaffold_1:1313299 ID=scaffold_1:1313299; Name=scaffold_1:1313299; organism=Prunus avium; type=genetic_marker; length=203bp
CTCGTATCAATTGCTTCCAACATTCTCACCACCTCACCCATTTCAGGACG
TTTATTTGCATTTGCGTCCCAGCACTTGCGCATGATGTTTGAAAAAGAAC
TYGGACAGCATCTGGGGATTTCTGGCCGTAAGTTCTGTTAACAAACCATA
TAGTACGTACAATGAAACGCCCATGAAGAGTTAGATGTCAAATCTTCGAC
TAG
Alignments
Feature NameTypeLocationAnalysis
Pp01 chromosome Pp01:1313158..1313158. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)
PAV_r1.0chr1 chromosome PAV_r1.0chr1:1376877..1376877. Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)