scaffold_1:7759966

Marker Overview
Namescaffold_1:7759966
dbSNP IDN/A
SNP Array ID
Cherry 6+9K SNP array:scaffold_1:7759966
TypeSNP
SNP AllelesT/C
5' Flanking SequenceTCACTTTGTTGAACAATTGGCTCCTTTAGCAGCTAGGCTGTTCAGCCACATGTTACATTA TTTTGAGGCTAATTGCTTAGTGCTCCCTAAAACTACAGTAT
3' Flanking SequenceACATTGCCCCTGGTAAGTCAAAGTAACCCACGTTGCCCCCTGGTAAGTCAAAGTAACCCA CCTTGCCCCCTTGATTGATTTTTGTGTCTCAGTTTGCCCCT
SpeciesPrunus avium
Publication[view all]
ContactStijn Vanderzande
Commentweet cherry SNPs identified by Peace et al (2012) that were not used for the original 6K SNP array - intragenic SNPs
Contact
NameDetails
Stijn Vanderzande
First name:Stijn
Last name:Vanderzande
Address:Laboratory for Fruit Breeding and Biotechnology - Willem de Croylaan 42 - B-3001 Heverlee - Belgium
Country:Belgium
Email:stijn.vanderzande@wsu.edu
Libraries
Library NameType
Cherry 6+9K SNP arraySNP_chip
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Sweet Cherry-RosBREED-3.8K-20201N/A19.2scaffold_1:7759966View
2Sweet Cherry-C-F1-6+9K_array1N/A16.24scaffold_1:7759966View
3Sweet Cherry-VxC-F1-6+9K_array1N/A1.94scaffold_1:7759966View
Sequence
>scaffold_1:7759966 ID=scaffold_1:7759966; Name=scaffold_1:7759966; organism=Prunus avium; type=genetic_marker; length=203bp
TCACTTTGTTGAACAATTGGCTCCTTTAGCAGCTAGGCTGTTCAGCCACA
TGTTACATTATTTTGAGGCTAATTGCTTAGTGCTCCCTAAAACTACAGTA
TYACATTGCCCCTGGTAAGTCAAAGTAACCCACGTTGCCCCCTGGTAAGT
CAAAGTAACCCACCTTGCCCCCTTGATTGATTTTTGTGTCTCAGTTTGCC
CCT
Alignments
Feature NameTypeLocationAnalysis
Pp01 chromosome Pp01:8209327..8209327. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)