scaffold_1:7459443

Marker Overview
Namescaffold_1:7459443
dbSNP IDN/A
SNP Array ID
Cherry 6+9K SNP array:scaffold_1:7459443
TypeSNP
SNP AllelesT/G
5' Flanking SequenceACGACTGGTTTGAGATACTAAAATAATGCTATTCCTATTTCATATAAATTTCTCCGTGAA AAACGACTTCACTCAACTTACCACAAACAATTTAAATTAAT
3' Flanking SequenceAATTAAACTTTAGTTGTTACTTGGTGGGCCCCACCACCGCAGTGTGCTGAACTGGCAAAA GTTTGGTAGCGAGAGTGTGTGAGTCACATACAGAAGGTACA
SpeciesPrunus avium
Publication[view all]
ContactStijn Vanderzande
Commentweet cherry SNPs identified by Peace et al (2012) that were not used for the original 6K SNP array - intergenic SNPs
Contact
NameDetails
Stijn Vanderzande
First name:Stijn
Last name:Vanderzande
Address:Laboratory for Fruit Breeding and Biotechnology - Willem de Croylaan 42 - B-3001 Heverlee - Belgium
Country:Belgium
Email:stijn.vanderzande@wsu.edu
Libraries
Library NameType
Cherry 6+9K SNP arraySNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Pp01chromosomePp01:7908805..7908805 .Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Sweet Cherry-RosBREED-3.8K-20201N/A18.75scaffold_1:7459443View
2Sweet Cherry-C-F1-6+9K_array1N/A16.24scaffold_1:7459443View
3Sweet Cherry-VxC-F1-6+9K_array1N/A1.94scaffold_1:7459443View
Sequence
>scaffold_1:7459443 ID=scaffold_1:7459443; Name=scaffold_1:7459443; organism=Prunus avium; type=genetic_marker; length=203bp
ACGACTGGTTTGAGATACTAAAATAATGCTATTCCTATTTCATATAAATT
TCTCCGTGAAAAACGACTTCACTCAACTTACCACAAACAATTTAAATTAA
TKAATTAAACTTTAGTTGTTACTTGGTGGGCCCCACCACCGCAGTGTGCT
GAACTGGCAAAAGTTTGGTAGCGAGAGTGTGTGAGTCACATACAGAAGGT
ACA