scaffold_1:47263

Marker Overview
Namescaffold_1:47263
dbSNP IDN/A
SNP Array ID
Cherry 6+9K SNP array:scaffold_1:47263
TypeSNP
SNP AllelesT/G
5' Flanking SequenceTACTCATTTAGTGATAAATGTGTCCTTCCAACTGTAGTCGATTTCTGTTTAAAGAAGATA ACAGAGCCTGAACCAGATGTGTTAACGTTTGAGCAGTTTCT
3' Flanking SequenceATTCAATGTATGGTAATGGTTAAGTGTGTATTGGAATGTAAAGAGTACAAGCCAAGTCTC ACTGGTCGGGTGATGGATGAAAATGTGGTTACACTGGAGCA
SpeciesPrunus cerasus
Publication[view all]
ContactStijn Vanderzande
Commentntragenic SNPs representing the fruticosa subgenome of tart cherry identified by Peace et al (2012) but not used for the original 6K SNP array
Contact
NameDetails
Stijn Vanderzande
First name:Stijn
Last name:Vanderzande
Address:Laboratory for Fruit Breeding and Biotechnology - Willem de Croylaan 42 - B-3001 Heverlee - Belgium
Country:Belgium
Email:stijn.vanderzande@wsu.edu
Libraries
Library NameType
Cherry 6+9K SNP arraySNP_chip
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Sweet Cherry-RosBREED-3.8K-20201N/A0.02scaffold_1:47263View
Sequence
>scaffold_1:47263 ID=scaffold_1:47263; Name=scaffold_1:47263; organism=Prunus cerasus; type=genetic_marker; length=203bp
TACTCATTTAGTGATAAATGTGTCCTTCCAACTGTAGTCGATTTCTGTTT
AAAGAAGATAACAGAGCCTGAACCAGATGTGTTAACGTTTGAGCAGTTTC
TKATTCAATGTATGGTAATGGTTAAGTGTGTATTGGAATGTAAAGAGTAC
AAGCCAAGTCTCACTGGTCGGGTGATGGATGAAAATGTGGTTACACTGGA
GCA
Alignments
Feature NameTypeLocationAnalysis
Pp01 chromosome Pp01:47261..47261. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)
PAV_r1.0chr1 chromosome PAV_r1.0chr1:71555..71555. Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)