scaffold_5:80039

Marker Overview
Namescaffold_5:80039
dbSNP IDN/A
SNP Array ID
Cherry 6+9K SNP array:scaffold_5:80039
TypeSNP
SNP AllelesT/C
5' Flanking SequenceTCTGAATCTAGATTGGAAGTAGAGCTATGGTTGTCGTCGTTGCGGTTGGTCAGCCGTTAA CTTTGTGGTGGCGGACATCGAGGGCAAAGGGTAGTTTTCCT
3' Flanking SequenceATTGCAAAAGGGACAGCATCAGACTAAGAGTAAGACCAGCGCGGTCAGTTCTGGTGGAGG CAGAAGCCAGACCAGCACCTACGCTCAGAGTCAGAGATATT
SpeciesPrunus cerasus
Publication[view all]
ContactStijn Vanderzande
Commentntragenic SNPs representing the fruticosa subgenome of tart cherry identified by Peace et al (2012) but not used for the original 6K SNP array
Contact
NameDetails
Stijn Vanderzande
First name:Stijn
Last name:Vanderzande
Address:Laboratory for Fruit Breeding and Biotechnology - Willem de Croylaan 42 - B-3001 Heverlee - Belgium
Country:Belgium
Email:stijn.vanderzande@wsu.edu
Libraries
Library NameType
Cherry 6+9K SNP arraySNP_chip
Sequence
>scaffold_5:80039 ID=scaffold_5:80039; Name=scaffold_5:80039; organism=Prunus cerasus; type=genetic_marker; length=203bp
TCTGAATCTAGATTGGAAGTAGAGCTATGGTTGTCGTCGTTGCGGTTGGT
CAGCCGTTAACTTTGTGGTGGCGGACATCGAGGGCAAAGGGTAGTTTTCC
TYATTGCAAAAGGGACAGCATCAGACTAAGAGTAAGACCAGCGCGGTCAG
TTCTGGTGGAGGCAGAAGCCAGACCAGCACCTACGCTCAGAGTCAGAGAT
ATT
Alignments
Feature NameTypeLocationAnalysis
Pp05 chromosome Pp05:80039..80039. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)
PAV_r1.0chr5 chromosome PAV_r1.0chr5:72368..72368. Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)