scaffold_7:11806103

Marker Overview
Namescaffold_7:11806103
dbSNP IDN/A
SNP Array ID
Cherry 6+9K SNP array:scaffold_7:11806103
TypeSNP
SNP AllelesT/C
5' Flanking SequenceATTTCACCACCTTCTCGCAAGCAATGGTCGTCTGCAAGTAGAAGTATAATAAATTATTTT CGAAACTACATATGGAATATTAATATATTATTGATAGAAAG
3' Flanking SequenceACTCATACTATTAGTTCAAGAGTCACCTGTTCCAATAAGGGCACAGTCCAGGAATCCCAC GATCCATCCCCAATTTCTCTACAGAGAAAAATGAAATCAGA
SpeciesPrunus cerasus
Publication[view all]
ContactStijn Vanderzande
Commentntragenic SNPs representing the fruticosa subgenome of tart cherry identified by Peace et al (2012) but not used for the original 6K SNP array
Contact
NameDetails
Stijn Vanderzande
First name:Stijn
Last name:Vanderzande
Address:Laboratory for Fruit Breeding and Biotechnology - Willem de Croylaan 42 - B-3001 Heverlee - Belgium
Country:Belgium
Email:stijn.vanderzande@wsu.edu
Libraries
Library NameType
Cherry 6+9K SNP arraySNP_chip
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Sweet Cherry-RosBREED-3.8K-20202N/A29.69scaffold_7:11806103View
2Sweet Cherry-C-F1-6+9K_array2N/A25.74scaffold_7:11806103View
3Sweet Cherry-VxC-F1-6+9K_array2N/A32.91scaffold_7:11806103View
Sequence
>scaffold_7:11806103 ID=scaffold_7:11806103; Name=scaffold_7:11806103; organism=Prunus cerasus; type=genetic_marker; length=203bp
ATTTCACCACCTTCTCGCAAGCAATGGTCGTCTGCAAGTAGAAGTATAAT
AAATTATTTTCGAAACTACATATGGAATATTAATATATTATTGATAGAAA
GYACTCATACTATTAGTTCAAGAGTCACCTGTTCCAATAAGGGCACAGTC
CAGGAATCCCACGATCCATCCCCAATTTCTCTACAGAGAAAAATGAAATC
AGA
Alignments
Feature NameTypeLocationAnalysis
Pp02 chromosome Pp02:18525154..18525154. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)
PAV_r1.0chr7 chromosome PAV_r1.0chr7:7554447..7554447. Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)