PBC Bioinformatics

       
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RESULTS SUMMARY
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  Total sequences analysed = 5020

  Sequences sorted into 1372 contigs and 0 singletons

  Total SNPs detected = 283

  Total consensus size = 949734 bp

  SNP frequency = 0.03/100 bp

  Smallest contig = 2 sequences

  Total transitions = 115

  Total transversions = 69

  Total indels = 99

  762 contigs containing 2 sequences

    (0.00)% of these contigs contain snps

  241 contigs containing 3 sequences

    (0.00)% of these contigs contain snps

  123 contigs containing 4 sequences

    24(19.51)% of these contigs contain snps

    with a total of 68 snps

  73 contigs containing 5 sequences

    (0.00)% of these contigs contain snps

  42 contigs containing 6 sequences

    9(21.43)% of these contigs contain snps

    with a total of 15 snps

  37 contigs containing 7 sequences

    7(18.92)% of these contigs contain snps

    with a total of 25 snps

  19 contigs containing 8 sequences

    8(42.11)% of these contigs contain snps

    with a total of 40 snps

  15 contigs containing 9 sequences

    2(13.33)% of these contigs contain snps

    with a total of 4 snps

  11 contigs containing 10 sequences

    2(18.18)% of these contigs contain snps

    with a total of 2 snps

  6 contigs containing 11 sequences

    (0.00)% of these contigs contain snps

  8 contigs containing 12 sequences

    4(50.00)% of these contigs contain snps

    with a total of 40 snps

  3 contigs containing 13 sequences

    (0.00)% of these contigs contain snps

  4 contigs containing 14 sequences

    2(50.00)% of these contigs contain snps

    with a total of 3 snps

  5 contigs containing 15 sequences

    (0.00)% of these contigs contain snps

  2 contigs containing 16 sequences

    (0.00)% of these contigs contain snps

  4 contigs containing 17 sequences

    3(75.00)% of these contigs contain snps

    with a total of 11 snps

  1 contigs containing 18 sequences

    1(100.00)% of these contigs contain snps

    with a total of 3 snps

  1 contigs containing 19 sequences

    1(100.00)% of these contigs contain snps

    with a total of 5 snps

  1 contigs containing 21 sequences

    (0.00)% of these contigs contain snps

  1 contigs containing 22 sequences

    1(100.00)% of these contigs contain snps

    with a total of 1 snps

  1 contigs containing 23 sequences

    (0.00)% of these contigs contain snps

  1 contigs containing 25 sequences

    (0.00)% of these contigs contain snps

  2 contigs containing 27 sequences

    1(50.00)% of these contigs contain snps

    with a total of 2 snps

  2 contigs containing 28 sequences

    1(50.00)% of these contigs contain snps

    with a total of 7 snps

  1 contigs containing 29 sequences

    (0.00)% of these contigs contain snps

  1 contigs containing 35 sequences

    1(100.00)% of these contigs contain snps

    with a total of 1 snps

  1 contigs containing 40 sequences

    (0.00)% of these contigs contain snps

  1 contigs containing 45 sequences

    (0.00)% of these contigs contain snps

  1 contigs containing 56 sequences

    1(100.00)% of these contigs contain snps

    with a total of 33 snps

  1 contigs containing 63 sequences

    1(100.00)% of these contigs contain snps

    with a total of 9 snps

  1 contigs containing 70 sequences

    1(100.00)% of these contigs contain snps

    with a total of 14 snps


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(C) Plant Biotechnology Centre Australia, DPI
Comments/suggestions to Dave Edwards
Dave.Edwards.vic.gov.au
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