PBC Bioinformatics

       
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RESULTS SUMMARY
View contig list


  Total sequences analysed = 11656

  Sequences sorted into 2939 contigs and 0 singletons

  Total SNPs detected = 342

  Total consensus size = 2567433 bp

  SNP frequency = 0.01/100 bp

  Smallest contig = 2 sequences

  Total transitions = 132

  Total transversions = 83

  Total indels = 127

  1533 contigs containing 2 sequences

    (0.00)% of these contigs contain snps

  548 contigs containing 3 sequences

    (0.00)% of these contigs contain snps

  296 contigs containing 4 sequences

    36(12.16)% of these contigs contain snps

    with a total of 93 snps

  144 contigs containing 5 sequences

    (0.00)% of these contigs contain snps

  93 contigs containing 6 sequences

    5(5.38)% of these contigs contain snps

    with a total of 10 snps

  74 contigs containing 7 sequences

    8(10.81)% of these contigs contain snps

    with a total of 21 snps

  53 contigs containing 8 sequences

    10(18.87)% of these contigs contain snps

    with a total of 38 snps

  32 contigs containing 9 sequences

    3(9.38)% of these contigs contain snps

    with a total of 5 snps

  26 contigs containing 10 sequences

    3(11.54)% of these contigs contain snps

    with a total of 11 snps

  19 contigs containing 11 sequences

    1(5.26)% of these contigs contain snps

    with a total of 1 snps

  19 contigs containing 12 sequences

    5(26.32)% of these contigs contain snps

    with a total of 22 snps

  18 contigs containing 13 sequences

    2(11.11)% of these contigs contain snps

    with a total of 10 snps

  6 contigs containing 14 sequences

    2(33.33)% of these contigs contain snps

    with a total of 4 snps

  9 contigs containing 15 sequences

    1(11.11)% of these contigs contain snps

    with a total of 2 snps

  6 contigs containing 16 sequences

    1(16.67)% of these contigs contain snps

    with a total of 1 snps

  8 contigs containing 17 sequences

    2(25.00)% of these contigs contain snps

    with a total of 7 snps

  4 contigs containing 18 sequences

    2(50.00)% of these contigs contain snps

    with a total of 4 snps

  3 contigs containing 19 sequences

    (0.00)% of these contigs contain snps

  4 contigs containing 20 sequences

    (0.00)% of these contigs contain snps

  2 contigs containing 21 sequences

    1(50.00)% of these contigs contain snps

    with a total of 3 snps

  1 contigs containing 22 sequences

    (0.00)% of these contigs contain snps

  3 contigs containing 23 sequences

    (0.00)% of these contigs contain snps

  4 contigs containing 24 sequences

    (0.00)% of these contigs contain snps

  1 contigs containing 25 sequences

    (0.00)% of these contigs contain snps

  1 contigs containing 26 sequences

    (0.00)% of these contigs contain snps

  2 contigs containing 27 sequences

    1(50.00)% of these contigs contain snps

    with a total of 28 snps

  1 contigs containing 28 sequences

    (0.00)% of these contigs contain snps

  3 contigs containing 29 sequences

    1(33.33)% of these contigs contain snps

    with a total of 7 snps

  2 contigs containing 31 sequences

    1(50.00)% of these contigs contain snps

    with a total of 1 snps

  1 contigs containing 33 sequences

    (0.00)% of these contigs contain snps

  2 contigs containing 34 sequences

    (0.00)% of these contigs contain snps

  5 contigs containing 35 sequences

    3(60.00)% of these contigs contain snps

    with a total of 5 snps

  1 contigs containing 38 sequences

    (0.00)% of these contigs contain snps

  1 contigs containing 39 sequences

    1(100.00)% of these contigs contain snps

    with a total of 1 snps

  2 contigs containing 40 sequences

    (0.00)% of these contigs contain snps

  2 contigs containing 44 sequences

    1(50.00)% of these contigs contain snps

    with a total of 1 snps

  1 contigs containing 45 sequences

    (0.00)% of these contigs contain snps

  1 contigs containing 46 sequences

    (0.00)% of these contigs contain snps

  2 contigs containing 51 sequences

    (0.00)% of these contigs contain snps

  1 contigs containing 52 sequences

    1(100.00)% of these contigs contain snps

    with a total of 4 snps

  1 contigs containing 55 sequences

    1(100.00)% of these contigs contain snps

    with a total of 35 snps

  1 contigs containing 68 sequences

    1(100.00)% of these contigs contain snps

    with a total of 9 snps

  1 contigs containing 69 sequences

    1(100.00)% of these contigs contain snps

    with a total of 2 snps

  1 contigs containing 91 sequences

    1(100.00)% of these contigs contain snps

    with a total of 3 snps

  1 contigs containing 103 sequences

    1(100.00)% of these contigs contain snps

    with a total of 14 snps


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(C) Plant Biotechnology Centre Australia, DPI
Comments/suggestions to Dave Edwards
Dave.Edwards.vic.gov.au
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