PBC Bioinformatics

       
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RESULTS SUMMARY
View contig list


  Total sequences analysed = 40818

  Sequences sorted into 5582 contigs and 0 singletons

  Total SNPs detected = 623

  Total consensus size = 5420231 bp

  SNP frequency = 0.01/100 bp

  Smallest contig = 2 sequences

  Total transitions = 252

  Total transversions = 137

  Total indels = 234

  2189 contigs containing 2 sequences

    (0.00)% of these contigs contain snps

  980 contigs containing 3 sequences

    (0.00)% of these contigs contain snps

  546 contigs containing 4 sequences

    29(5.31)% of these contigs contain snps

    with a total of 73 snps

  376 contigs containing 5 sequences

    (0.00)% of these contigs contain snps

  223 contigs containing 6 sequences

    5(2.24)% of these contigs contain snps

    with a total of 6 snps

  202 contigs containing 7 sequences

    5(2.48)% of these contigs contain snps

    with a total of 24 snps

  136 contigs containing 8 sequences

    10(7.35)% of these contigs contain snps

    with a total of 35 snps

  94 contigs containing 9 sequences

    2(2.13)% of these contigs contain snps

    with a total of 9 snps

  93 contigs containing 10 sequences

    4(4.30)% of these contigs contain snps

    with a total of 24 snps

  73 contigs containing 11 sequences

    7(9.59)% of these contigs contain snps

    with a total of 33 snps

  67 contigs containing 12 sequences

    7(10.45)% of these contigs contain snps

    with a total of 28 snps

  38 contigs containing 13 sequences

    2(5.26)% of these contigs contain snps

    with a total of 13 snps

  45 contigs containing 14 sequences

    3(6.67)% of these contigs contain snps

    with a total of 12 snps

  46 contigs containing 15 sequences

    2(4.35)% of these contigs contain snps

    with a total of 2 snps

  29 contigs containing 16 sequences

    (0.00)% of these contigs contain snps

  30 contigs containing 17 sequences

    (0.00)% of these contigs contain snps

  24 contigs containing 18 sequences

    1(4.17)% of these contigs contain snps

    with a total of 7 snps

  27 contigs containing 19 sequences

    3(11.11)% of these contigs contain snps

    with a total of 8 snps

  29 contigs containing 20 sequences

    2(6.90)% of these contigs contain snps

    with a total of 8 snps

  21 contigs containing 21 sequences

    1(4.76)% of these contigs contain snps

    with a total of 1 snps

  14 contigs containing 22 sequences

    (0.00)% of these contigs contain snps

  18 contigs containing 23 sequences

    1(5.56)% of these contigs contain snps

    with a total of 3 snps

  12 contigs containing 24 sequences

    1(8.33)% of these contigs contain snps

    with a total of 1 snps

  10 contigs containing 25 sequences

    2(20.00)% of these contigs contain snps

    with a total of 2 snps

  13 contigs containing 26 sequences

    1(7.69)% of these contigs contain snps

    with a total of 1 snps

  10 contigs containing 27 sequences

    (0.00)% of these contigs contain snps

  16 contigs containing 28 sequences

    (0.00)% of these contigs contain snps

  18 contigs containing 29 sequences

    5(27.78)% of these contigs contain snps

    with a total of 11 snps

  7 contigs containing 30 sequences

    2(28.57)% of these contigs contain snps

    with a total of 3 snps

  8 contigs containing 31 sequences

    (0.00)% of these contigs contain snps

  7 contigs containing 32 sequences

    1(14.29)% of these contigs contain snps

    with a total of 1 snps

  10 contigs containing 33 sequences

    1(10.00)% of these contigs contain snps

    with a total of 3 snps

  5 contigs containing 34 sequences

    2(40.00)% of these contigs contain snps

    with a total of 5 snps

  9 contigs containing 35 sequences

    1(11.11)% of these contigs contain snps

    with a total of 1 snps

  9 contigs containing 36 sequences

    (0.00)% of these contigs contain snps

  8 contigs containing 37 sequences

    (0.00)% of these contigs contain snps

  5 contigs containing 38 sequences

    2(40.00)% of these contigs contain snps

    with a total of 18 snps

  4 contigs containing 39 sequences

    (0.00)% of these contigs contain snps

  4 contigs containing 40 sequences

    2(50.00)% of these contigs contain snps

    with a total of 26 snps

  5 contigs containing 41 sequences

    3(60.00)% of these contigs contain snps

    with a total of 5 snps

  4 contigs containing 42 sequences

    1(25.00)% of these contigs contain snps

    with a total of 19 snps

  8 contigs containing 43 sequences

    1(12.50)% of these contigs contain snps

    with a total of 1 snps

  2 contigs containing 44 sequences

    (0.00)% of these contigs contain snps

  4 contigs containing 45 sequences

    (0.00)% of these contigs contain snps

  2 contigs containing 46 sequences

    (0.00)% of these contigs contain snps

  2 contigs containing 47 sequences

    1(50.00)% of these contigs contain snps

    with a total of 2 snps

  4 contigs containing 48 sequences

    2(50.00)% of these contigs contain snps

    with a total of 2 snps

  4 contigs containing 49 sequences

    1(25.00)% of these contigs contain snps

    with a total of 1 snps

  4 contigs containing 51 sequences

    1(25.00)% of these contigs contain snps

    with a total of 1 snps

  5 contigs containing 52 sequences

    2(40.00)% of these contigs contain snps

    with a total of 3 snps

  3 contigs containing 53 sequences

    (0.00)% of these contigs contain snps

  1 contigs containing 54 sequences

    (0.00)% of these contigs contain snps

  1 contigs containing 55 sequences

    (0.00)% of these contigs contain snps

  2 contigs containing 56 sequences

    1(50.00)% of these contigs contain snps

    with a total of 1 snps

  2 contigs containing 57 sequences

    1(50.00)% of these contigs contain snps

    with a total of 2 snps

  1 contigs containing 58 sequences

    1(100.00)% of these contigs contain snps

    with a total of 7 snps

  3 contigs containing 59 sequences

    (0.00)% of these contigs contain snps

  1 contigs containing 60 sequences

    1(100.00)% of these contigs contain snps

    with a total of 2 snps

  4 contigs containing 63 sequences

    1(25.00)% of these contigs contain snps

    with a total of 3 snps

  1 contigs containing 64 sequences

    (0.00)% of these contigs contain snps

  2 contigs containing 65 sequences

    (0.00)% of these contigs contain snps

  2 contigs containing 66 sequences

    (0.00)% of these contigs contain snps

  3 contigs containing 67 sequences

    1(33.33)% of these contigs contain snps

    with a total of 9 snps

  1 contigs containing 68 sequences

    1(100.00)% of these contigs contain snps

    with a total of 4 snps

  1 contigs containing 70 sequences

    (0.00)% of these contigs contain snps

  2 contigs containing 72 sequences

    (0.00)% of these contigs contain snps

  1 contigs containing 73 sequences

    (0.00)% of these contigs contain snps

  1 contigs containing 74 sequences

    (0.00)% of these contigs contain snps

  1 contigs containing 76 sequences

    1(100.00)% of these contigs contain snps

    with a total of 1 snps

  3 contigs containing 77 sequences

    1(33.33)% of these contigs contain snps

    with a total of 1 snps

  2 contigs containing 79 sequences

    (0.00)% of these contigs contain snps

  3 contigs containing 80 sequences

    (0.00)% of these contigs contain snps

  4 contigs containing 83 sequences

    (0.00)% of these contigs contain snps

  1 contigs containing 84 sequences

    (0.00)% of these contigs contain snps

  2 contigs containing 87 sequences

    1(50.00)% of these contigs contain snps

    with a total of 4 snps

  1 contigs containing 88 sequences

    1(100.00)% of these contigs contain snps

    with a total of 2 snps

  1 contigs containing 89 sequences

    1(100.00)% of these contigs contain snps

    with a total of 41 snps

  1 contigs containing 90 sequences

    (0.00)% of these contigs contain snps

  1 contigs containing 94 sequences

    1(100.00)% of these contigs contain snps

    with a total of 16 snps

  1 contigs containing 95 sequences

    1(100.00)% of these contigs contain snps

    with a total of 1 snps

  1 contigs containing 96 sequences

    1(100.00)% of these contigs contain snps

    with a total of 1 snps

  2 contigs containing 100 sequences

    2(100.00)% of these contigs contain snps

    with a total of 2 snps

  1 contigs containing 101 sequences

    (0.00)% of these contigs contain snps

  1 contigs containing 104 sequences

    (0.00)% of these contigs contain snps

  1 contigs containing 110 sequences

    (0.00)% of these contigs contain snps

  1 contigs containing 123 sequences

    1(100.00)% of these contigs contain snps

    with a total of 2 snps

  2 contigs containing 128 sequences

    2(100.00)% of these contigs contain snps

    with a total of 3 snps

  1 contigs containing 131 sequences

    (0.00)% of these contigs contain snps

  1 contigs containing 137 sequences

    (0.00)% of these contigs contain snps

  1 contigs containing 138 sequences

    1(100.00)% of these contigs contain snps

    with a total of 3 snps

  2 contigs containing 139 sequences

    1(50.00)% of these contigs contain snps

    with a total of 1 snps

  1 contigs containing 142 sequences

    1(100.00)% of these contigs contain snps

    with a total of 1 snps

  1 contigs containing 157 sequences

    (0.00)% of these contigs contain snps

  1 contigs containing 164 sequences

    1(100.00)% of these contigs contain snps

    with a total of 3 snps

  1 contigs containing 165 sequences

    (0.00)% of these contigs contain snps

  1 contigs containing 167 sequences

    (0.00)% of these contigs contain snps

  1 contigs containing 172 sequences

    1(100.00)% of these contigs contain snps

    with a total of 7 snps

  1 contigs containing 178 sequences

    1(100.00)% of these contigs contain snps

    with a total of 4 snps

  1 contigs containing 222 sequences

    1(100.00)% of these contigs contain snps

    with a total of 3 snps

  1 contigs containing 256 sequences

    1(100.00)% of these contigs contain snps

    with a total of 9 snps

  1 contigs containing 259 sequences

    1(100.00)% of these contigs contain snps

    with a total of 2 snps

  1 contigs containing 262 sequences

    1(100.00)% of these contigs contain snps

    with a total of 5 snps

  1 contigs containing 277 sequences

    1(100.00)% of these contigs contain snps

    with a total of 9 snps

  1 contigs containing 325 sequences

    1(100.00)% of these contigs contain snps

    with a total of 32 snps

  1 contigs containing 435 sequences

    (0.00)% of these contigs contain snps

  1 contigs containing 568 sequences

    1(100.00)% of these contigs contain snps

    with a total of 18 snps

  1 contigs containing 804 sequences

    1(100.00)% of these contigs contain snps

    with a total of 32 snps


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(C) Plant Biotechnology Centre Australia, DPI
Comments/suggestions to Dave Edwards
Dave.Edwards.vic.gov.au
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