PBC Bioinformatics

       
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RESULTS SUMMARY
View contig list


  Total sequences analysed = 191925

  Sequences sorted into 23868 contigs and 0 singletons

  Total SNPs detected = 14298

  Total consensus size = 20360530 bp

  SNP frequency = 0.07/100 bp

  Smallest contig = 2 sequences

  Total transitions = 7060

  Total transversions = 3836

  Total indels = 3402

  7200 contigs containing 2 sequences

    (0.00)% of these contigs contain snps

  4013 contigs containing 3 sequences

    (0.00)% of these contigs contain snps

  2681 contigs containing 4 sequences

    634(23.65)% of these contigs contain snps

    with a total of 1509 snps

  1901 contigs containing 5 sequences

    (0.00)% of these contigs contain snps

  1310 contigs containing 6 sequences

    124(9.47)% of these contigs contain snps

    with a total of 231 snps

  1053 contigs containing 7 sequences

    215(20.42)% of these contigs contain snps

    with a total of 466 snps

  789 contigs containing 8 sequences

    230(29.15)% of these contigs contain snps

    with a total of 648 snps

  621 contigs containing 9 sequences

    63(10.14)% of these contigs contain snps

    with a total of 142 snps

  491 contigs containing 10 sequences

    85(17.31)% of these contigs contain snps

    with a total of 237 snps

  416 contigs containing 11 sequences

    105(25.24)% of these contigs contain snps

    with a total of 307 snps

  347 contigs containing 12 sequences

    117(33.72)% of these contigs contain snps

    with a total of 328 snps

  289 contigs containing 13 sequences

    50(17.30)% of these contigs contain snps

    with a total of 117 snps

  258 contigs containing 14 sequences

    65(25.19)% of these contigs contain snps

    with a total of 137 snps

  215 contigs containing 15 sequences

    66(30.70)% of these contigs contain snps

    with a total of 212 snps

  178 contigs containing 16 sequences

    58(32.58)% of these contigs contain snps

    with a total of 227 snps

  153 contigs containing 17 sequences

    54(35.29)% of these contigs contain snps

    with a total of 199 snps

  135 contigs containing 18 sequences

    51(37.78)% of these contigs contain snps

    with a total of 137 snps

  148 contigs containing 19 sequences

    64(43.24)% of these contigs contain snps

    with a total of 265 snps

  103 contigs containing 20 sequences

    49(47.57)% of these contigs contain snps

    with a total of 172 snps

  111 contigs containing 21 sequences

    45(40.54)% of these contigs contain snps

    with a total of 159 snps

  82 contigs containing 22 sequences

    30(36.59)% of these contigs contain snps

    with a total of 118 snps

  83 contigs containing 23 sequences

    41(49.40)% of these contigs contain snps

    with a total of 142 snps

  63 contigs containing 24 sequences

    27(42.86)% of these contigs contain snps

    with a total of 72 snps

  62 contigs containing 25 sequences

    33(53.23)% of these contigs contain snps

    with a total of 98 snps

  70 contigs containing 26 sequences

    33(47.14)% of these contigs contain snps

    with a total of 99 snps

  53 contigs containing 27 sequences

    23(43.40)% of these contigs contain snps

    with a total of 88 snps

  64 contigs containing 28 sequences

    26(40.62)% of these contigs contain snps

    with a total of 108 snps

  61 contigs containing 29 sequences

    32(52.46)% of these contigs contain snps

    with a total of 129 snps

  47 contigs containing 30 sequences

    27(57.45)% of these contigs contain snps

    with a total of 120 snps

  40 contigs containing 31 sequences

    19(47.50)% of these contigs contain snps

    with a total of 66 snps

  36 contigs containing 32 sequences

    21(58.33)% of these contigs contain snps

    with a total of 68 snps

  33 contigs containing 33 sequences

    18(54.55)% of these contigs contain snps

    with a total of 60 snps

  28 contigs containing 34 sequences

    15(53.57)% of these contigs contain snps

    with a total of 91 snps

  29 contigs containing 35 sequences

    19(65.52)% of these contigs contain snps

    with a total of 50 snps

  29 contigs containing 36 sequences

    22(75.86)% of these contigs contain snps

    with a total of 132 snps

  26 contigs containing 37 sequences

    16(61.54)% of these contigs contain snps

    with a total of 107 snps

  30 contigs containing 38 sequences

    24(80.00)% of these contigs contain snps

    with a total of 119 snps

  33 contigs containing 39 sequences

    26(78.79)% of these contigs contain snps

    with a total of 127 snps

  23 contigs containing 40 sequences

    17(73.91)% of these contigs contain snps

    with a total of 136 snps

  20 contigs containing 41 sequences

    15(75.00)% of these contigs contain snps

    with a total of 94 snps

  18 contigs containing 42 sequences

    14(77.78)% of these contigs contain snps

    with a total of 63 snps

  20 contigs containing 43 sequences

    15(75.00)% of these contigs contain snps

    with a total of 118 snps

  22 contigs containing 44 sequences

    19(86.36)% of these contigs contain snps

    with a total of 91 snps

  20 contigs containing 45 sequences

    14(70.00)% of these contigs contain snps

    with a total of 54 snps

  13 contigs containing 46 sequences

    12(92.31)% of these contigs contain snps

    with a total of 87 snps

  15 contigs containing 47 sequences

    10(66.67)% of these contigs contain snps

    with a total of 54 snps

  11 contigs containing 48 sequences

    10(90.91)% of these contigs contain snps

    with a total of 39 snps

  16 contigs containing 49 sequences

    14(87.50)% of these contigs contain snps

    with a total of 89 snps

  14 contigs containing 50 sequences

    12(85.71)% of these contigs contain snps

    with a total of 90 snps

  8 contigs containing 51 sequences

    7(87.50)% of these contigs contain snps

    with a total of 53 snps

  12 contigs containing 52 sequences

    9(75.00)% of these contigs contain snps

    with a total of 52 snps

  14 contigs containing 53 sequences

    14(100.00)% of these contigs contain snps

    with a total of 135 snps

  15 contigs containing 54 sequences

    15(100.00)% of these contigs contain snps

    with a total of 214 snps

  14 contigs containing 55 sequences

    14(100.00)% of these contigs contain snps

    with a total of 118 snps

  6 contigs containing 56 sequences

    6(100.00)% of these contigs contain snps

    with a total of 42 snps

  16 contigs containing 57 sequences

    15(93.75)% of these contigs contain snps

    with a total of 116 snps

  16 contigs containing 58 sequences

    13(81.25)% of these contigs contain snps

    with a total of 90 snps

  9 contigs containing 59 sequences

    8(88.89)% of these contigs contain snps

    with a total of 53 snps

  6 contigs containing 60 sequences

    5(83.33)% of these contigs contain snps

    with a total of 49 snps

  8 contigs containing 61 sequences

    6(75.00)% of these contigs contain snps

    with a total of 35 snps

  6 contigs containing 62 sequences

    6(100.00)% of these contigs contain snps

    with a total of 42 snps

  6 contigs containing 63 sequences

    6(100.00)% of these contigs contain snps

    with a total of 35 snps

  2 contigs containing 64 sequences

    1(50.00)% of these contigs contain snps

    with a total of 6 snps

  8 contigs containing 65 sequences

    7(87.50)% of these contigs contain snps

    with a total of 59 snps

  7 contigs containing 66 sequences

    4(57.14)% of these contigs contain snps

    with a total of 21 snps

  10 contigs containing 67 sequences

    8(80.00)% of these contigs contain snps

    with a total of 62 snps

  10 contigs containing 68 sequences

    8(80.00)% of these contigs contain snps

    with a total of 92 snps

  1 contigs containing 69 sequences

    1(100.00)% of these contigs contain snps

    with a total of 29 snps

  7 contigs containing 70 sequences

    7(100.00)% of these contigs contain snps

    with a total of 49 snps

  2 contigs containing 71 sequences

    2(100.00)% of these contigs contain snps

    with a total of 11 snps

  4 contigs containing 72 sequences

    3(75.00)% of these contigs contain snps

    with a total of 27 snps

  4 contigs containing 73 sequences

    4(100.00)% of these contigs contain snps

    with a total of 50 snps

  8 contigs containing 74 sequences

    7(87.50)% of these contigs contain snps

    with a total of 53 snps

  1 contigs containing 75 sequences

    1(100.00)% of these contigs contain snps

    with a total of 5 snps

  9 contigs containing 76 sequences

    8(88.89)% of these contigs contain snps

    with a total of 83 snps

  2 contigs containing 78 sequences

    1(50.00)% of these contigs contain snps

    with a total of 8 snps

  6 contigs containing 79 sequences

    6(100.00)% of these contigs contain snps

    with a total of 53 snps

  3 contigs containing 80 sequences

    3(100.00)% of these contigs contain snps

    with a total of 21 snps

  5 contigs containing 81 sequences

    5(100.00)% of these contigs contain snps

    with a total of 54 snps

  3 contigs containing 82 sequences

    3(100.00)% of these contigs contain snps

    with a total of 24 snps

  2 contigs containing 83 sequences

    2(100.00)% of these contigs contain snps

    with a total of 20 snps

  1 contigs containing 84 sequences

    (0.00)% of these contigs contain snps

  7 contigs containing 85 sequences

    7(100.00)% of these contigs contain snps

    with a total of 44 snps

  1 contigs containing 86 sequences

    1(100.00)% of these contigs contain snps

    with a total of 4 snps

  4 contigs containing 87 sequences

    3(75.00)% of these contigs contain snps

    with a total of 22 snps

  3 contigs containing 88 sequences

    3(100.00)% of these contigs contain snps

    with a total of 22 snps

  1 contigs containing 89 sequences

    1(100.00)% of these contigs contain snps

    with a total of 17 snps

  3 contigs containing 90 sequences

    3(100.00)% of these contigs contain snps

    with a total of 74 snps

  1 contigs containing 91 sequences

    1(100.00)% of these contigs contain snps

    with a total of 9 snps

  1 contigs containing 92 sequences

    1(100.00)% of these contigs contain snps

    with a total of 3 snps

  1 contigs containing 93 sequences

    1(100.00)% of these contigs contain snps

    with a total of 21 snps

  2 contigs containing 94 sequences

    1(50.00)% of these contigs contain snps

    with a total of 1 snps

  1 contigs containing 95 sequences

    1(100.00)% of these contigs contain snps

    with a total of 3 snps

  5 contigs containing 96 sequences

    5(100.00)% of these contigs contain snps

    with a total of 102 snps

  3 contigs containing 97 sequences

    3(100.00)% of these contigs contain snps

    with a total of 42 snps

  4 contigs containing 98 sequences

    4(100.00)% of these contigs contain snps

    with a total of 70 snps

  2 contigs containing 99 sequences

    2(100.00)% of these contigs contain snps

    with a total of 24 snps

  3 contigs containing 100 sequences

    2(66.67)% of these contigs contain snps

    with a total of 17 snps

  1 contigs containing 101 sequences

    1(100.00)% of these contigs contain snps

    with a total of 6 snps

  4 contigs containing 103 sequences

    4(100.00)% of these contigs contain snps

    with a total of 79 snps

  1 contigs containing 105 sequences

    1(100.00)% of these contigs contain snps

    with a total of 32 snps

  1 contigs containing 107 sequences

    1(100.00)% of these contigs contain snps

    with a total of 2 snps

  2 contigs containing 108 sequences

    1(50.00)% of these contigs contain snps

    with a total of 15 snps

  2 contigs containing 110 sequences

    2(100.00)% of these contigs contain snps

    with a total of 15 snps

  2 contigs containing 111 sequences

    2(100.00)% of these contigs contain snps

    with a total of 36 snps

  2 contigs containing 112 sequences

    2(100.00)% of these contigs contain snps

    with a total of 18 snps

  1 contigs containing 113 sequences

    1(100.00)% of these contigs contain snps

    with a total of 9 snps

  1 contigs containing 115 sequences

    1(100.00)% of these contigs contain snps

    with a total of 33 snps

  1 contigs containing 116 sequences

    1(100.00)% of these contigs contain snps

    with a total of 27 snps

  2 contigs containing 117 sequences

    2(100.00)% of these contigs contain snps

    with a total of 35 snps

  2 contigs containing 118 sequences

    2(100.00)% of these contigs contain snps

    with a total of 7 snps

  1 contigs containing 120 sequences

    1(100.00)% of these contigs contain snps

    with a total of 1 snps

  1 contigs containing 121 sequences

    (0.00)% of these contigs contain snps

  1 contigs containing 123 sequences

    1(100.00)% of these contigs contain snps

    with a total of 14 snps

  1 contigs containing 124 sequences

    1(100.00)% of these contigs contain snps

    with a total of 7 snps

  1 contigs containing 128 sequences

    1(100.00)% of these contigs contain snps

    with a total of 33 snps

  2 contigs containing 129 sequences

    2(100.00)% of these contigs contain snps

    with a total of 42 snps

  3 contigs containing 130 sequences

    2(66.67)% of these contigs contain snps

    with a total of 27 snps

  1 contigs containing 132 sequences

    1(100.00)% of these contigs contain snps

    with a total of 1 snps

  2 contigs containing 133 sequences

    2(100.00)% of these contigs contain snps

    with a total of 35 snps

  1 contigs containing 134 sequences

    (0.00)% of these contigs contain snps

  1 contigs containing 135 sequences

    1(100.00)% of these contigs contain snps

    with a total of 20 snps

  2 contigs containing 136 sequences

    2(100.00)% of these contigs contain snps

    with a total of 51 snps

  1 contigs containing 137 sequences

    1(100.00)% of these contigs contain snps

    with a total of 10 snps

  2 contigs containing 138 sequences

    2(100.00)% of these contigs contain snps

    with a total of 17 snps

  1 contigs containing 141 sequences

    1(100.00)% of these contigs contain snps

    with a total of 24 snps

  1 contigs containing 143 sequences

    1(100.00)% of these contigs contain snps

    with a total of 35 snps

  4 contigs containing 145 sequences

    4(100.00)% of these contigs contain snps

    with a total of 72 snps

  3 contigs containing 146 sequences

    3(100.00)% of these contigs contain snps

    with a total of 45 snps

  1 contigs containing 147 sequences

    1(100.00)% of these contigs contain snps

    with a total of 34 snps

  2 contigs containing 149 sequences

    2(100.00)% of these contigs contain snps

    with a total of 78 snps

  1 contigs containing 150 sequences

    1(100.00)% of these contigs contain snps

    with a total of 13 snps

  1 contigs containing 152 sequences

    1(100.00)% of these contigs contain snps

    with a total of 21 snps

  1 contigs containing 157 sequences

    1(100.00)% of these contigs contain snps

    with a total of 3 snps

  1 contigs containing 158 sequences

    1(100.00)% of these contigs contain snps

    with a total of 7 snps

  1 contigs containing 159 sequences

    1(100.00)% of these contigs contain snps

    with a total of 10 snps

  2 contigs containing 160 sequences

    2(100.00)% of these contigs contain snps

    with a total of 28 snps

  1 contigs containing 162 sequences

    1(100.00)% of these contigs contain snps

    with a total of 14 snps

  1 contigs containing 163 sequences

    1(100.00)% of these contigs contain snps

    with a total of 68 snps

  3 contigs containing 165 sequences

    3(100.00)% of these contigs contain snps

    with a total of 44 snps

  2 contigs containing 168 sequences

    2(100.00)% of these contigs contain snps

    with a total of 48 snps

  1 contigs containing 172 sequences

    1(100.00)% of these contigs contain snps

    with a total of 45 snps

  1 contigs containing 176 sequences

    1(100.00)% of these contigs contain snps

    with a total of 4 snps

  2 contigs containing 177 sequences

    2(100.00)% of these contigs contain snps

    with a total of 13 snps

  1 contigs containing 178 sequences

    1(100.00)% of these contigs contain snps

    with a total of 20 snps

  1 contigs containing 185 sequences

    1(100.00)% of these contigs contain snps

    with a total of 29 snps

  1 contigs containing 187 sequences

    1(100.00)% of these contigs contain snps

    with a total of 29 snps

  1 contigs containing 191 sequences

    1(100.00)% of these contigs contain snps

    with a total of 5 snps

  2 contigs containing 195 sequences

    2(100.00)% of these contigs contain snps

    with a total of 59 snps

  2 contigs containing 196 sequences

    2(100.00)% of these contigs contain snps

    with a total of 20 snps

  1 contigs containing 198 sequences

    1(100.00)% of these contigs contain snps

    with a total of 36 snps

  1 contigs containing 207 sequences

    1(100.00)% of these contigs contain snps

    with a total of 46 snps

  1 contigs containing 208 sequences

    1(100.00)% of these contigs contain snps

    with a total of 29 snps

  2 contigs containing 214 sequences

    2(100.00)% of these contigs contain snps

    with a total of 64 snps

  1 contigs containing 216 sequences

    1(100.00)% of these contigs contain snps

    with a total of 5 snps

  1 contigs containing 217 sequences

    1(100.00)% of these contigs contain snps

    with a total of 55 snps

  1 contigs containing 225 sequences

    1(100.00)% of these contigs contain snps

    with a total of 62 snps

  1 contigs containing 230 sequences

    1(100.00)% of these contigs contain snps

    with a total of 38 snps

  1 contigs containing 233 sequences

    1(100.00)% of these contigs contain snps

    with a total of 40 snps

  1 contigs containing 237 sequences

    1(100.00)% of these contigs contain snps

    with a total of 74 snps

  1 contigs containing 248 sequences

    1(100.00)% of these contigs contain snps

    with a total of 19 snps

  2 contigs containing 260 sequences

    2(100.00)% of these contigs contain snps

    with a total of 52 snps

  1 contigs containing 261 sequences

    1(100.00)% of these contigs contain snps

    with a total of 25 snps

  1 contigs containing 264 sequences

    1(100.00)% of these contigs contain snps

    with a total of 10 snps

  1 contigs containing 265 sequences

    1(100.00)% of these contigs contain snps

    with a total of 7 snps

  1 contigs containing 267 sequences

    1(100.00)% of these contigs contain snps

    with a total of 14 snps

  1 contigs containing 282 sequences

    1(100.00)% of these contigs contain snps

    with a total of 62 snps

  1 contigs containing 293 sequences

    1(100.00)% of these contigs contain snps

    with a total of 50 snps

  1 contigs containing 317 sequences

    1(100.00)% of these contigs contain snps

    with a total of 102 snps

  1 contigs containing 331 sequences

    1(100.00)% of these contigs contain snps

    with a total of 9 snps

  1 contigs containing 332 sequences

    1(100.00)% of these contigs contain snps

    with a total of 106 snps

  1 contigs containing 340 sequences

    1(100.00)% of these contigs contain snps

    with a total of 53 snps

  1 contigs containing 367 sequences

    1(100.00)% of these contigs contain snps

    with a total of 24 snps

  1 contigs containing 383 sequences

    1(100.00)% of these contigs contain snps

    with a total of 98 snps

  1 contigs containing 390 sequences

    1(100.00)% of these contigs contain snps

    with a total of 101 snps

  1 contigs containing 395 sequences

    1(100.00)% of these contigs contain snps

    with a total of 20 snps

  1 contigs containing 398 sequences

    1(100.00)% of these contigs contain snps

    with a total of 81 snps

  1 contigs containing 399 sequences

    1(100.00)% of these contigs contain snps

    with a total of 108 snps

  1 contigs containing 408 sequences

    1(100.00)% of these contigs contain snps

    with a total of 95 snps

  1 contigs containing 416 sequences

    1(100.00)% of these contigs contain snps

    with a total of 49 snps

  1 contigs containing 421 sequences

    1(100.00)% of these contigs contain snps

    with a total of 145 snps

  1 contigs containing 446 sequences

    1(100.00)% of these contigs contain snps

    with a total of 31 snps

  1 contigs containing 454 sequences

    1(100.00)% of these contigs contain snps

    with a total of 62 snps

  1 contigs containing 474 sequences

    1(100.00)% of these contigs contain snps

    with a total of 179 snps

  1 contigs containing 488 sequences

    1(100.00)% of these contigs contain snps

    with a total of 105 snps

  1 contigs containing 686 sequences

    1(100.00)% of these contigs contain snps

    with a total of 65 snps

  1 contigs containing 723 sequences

    1(100.00)% of these contigs contain snps

    with a total of 33 snps

  1 contigs containing 830 sequences

    1(100.00)% of these contigs contain snps

    with a total of 80 snps

  1 contigs containing 915 sequences

    1(100.00)% of these contigs contain snps

    with a total of 17 snps

  1 contigs containing 1015 sequences

    1(100.00)% of these contigs contain snps

    with a total of 269 snps


        Credits & Disclaimer        
               
               
(C) Plant Biotechnology Centre Australia, DPI
Comments/suggestions to Dave Edwards
Dave.Edwards.vic.gov.au
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