RESULTS SUMMARY
View contig list
Total sequences analysed = 33006
Sequences sorted into 5047 contigs and 0 singletons
Total SNPs detected = 3776
Total consensus size = 4211138 bp
SNP frequency = 0.09/100 bp
Smallest contig = 2 sequences
Total transitions = 1838
Total transversions = 1050
Total indels = 888
2104 contigs containing 2 sequences
(0.00)% of these contigs contain snps
921 contigs containing 3 sequences
(0.00)% of these contigs contain snps
468 contigs containing 4 sequences
107(22.86)% of these contigs contain snps
with a total of 474 snps
356 contigs containing 5 sequences
(0.00)% of these contigs contain snps
216 contigs containing 6 sequences
25(11.57)% of these contigs contain snps
with a total of 96 snps
152 contigs containing 7 sequences
37(24.34)% of these contigs contain snps
with a total of 174 snps
100 contigs containing 8 sequences
41(41.00)% of these contigs contain snps
with a total of 211 snps
102 contigs containing 9 sequences
9(8.82)% of these contigs contain snps
with a total of 45 snps
69 contigs containing 10 sequences
18(26.09)% of these contigs contain snps
with a total of 68 snps
72 contigs containing 11 sequences
21(29.17)% of these contigs contain snps
with a total of 93 snps
58 contigs containing 12 sequences
23(39.66)% of these contigs contain snps
with a total of 151 snps
46 contigs containing 13 sequences
8(17.39)% of these contigs contain snps
with a total of 18 snps
38 contigs containing 14 sequences
15(39.47)% of these contigs contain snps
with a total of 72 snps
26 contigs containing 15 sequences
9(34.62)% of these contigs contain snps
with a total of 40 snps
19 contigs containing 16 sequences
6(31.58)% of these contigs contain snps
with a total of 31 snps
20 contigs containing 17 sequences
9(45.00)% of these contigs contain snps
with a total of 26 snps
19 contigs containing 18 sequences
8(42.11)% of these contigs contain snps
with a total of 51 snps
30 contigs containing 19 sequences
17(56.67)% of these contigs contain snps
with a total of 132 snps
20 contigs containing 20 sequences
9(45.00)% of these contigs contain snps
with a total of 67 snps
16 contigs containing 21 sequences
7(43.75)% of these contigs contain snps
with a total of 27 snps
14 contigs containing 22 sequences
10(71.43)% of these contigs contain snps
with a total of 93 snps
10 contigs containing 23 sequences
7(70.00)% of these contigs contain snps
with a total of 60 snps
16 contigs containing 24 sequences
10(62.50)% of these contigs contain snps
with a total of 56 snps
4 contigs containing 25 sequences
1(25.00)% of these contigs contain snps
with a total of 2 snps
5 contigs containing 26 sequences
4(80.00)% of these contigs contain snps
with a total of 34 snps
8 contigs containing 27 sequences
3(37.50)% of these contigs contain snps
with a total of 23 snps
3 contigs containing 28 sequences
2(66.67)% of these contigs contain snps
with a total of 7 snps
7 contigs containing 29 sequences
3(42.86)% of these contigs contain snps
with a total of 21 snps
5 contigs containing 30 sequences
5(100.00)% of these contigs contain snps
with a total of 26 snps
5 contigs containing 31 sequences
4(80.00)% of these contigs contain snps
with a total of 38 snps
5 contigs containing 32 sequences
4(80.00)% of these contigs contain snps
with a total of 42 snps
6 contigs containing 33 sequences
3(50.00)% of these contigs contain snps
with a total of 35 snps
10 contigs containing 34 sequences
7(70.00)% of these contigs contain snps
with a total of 83 snps
1 contigs containing 35 sequences
1(100.00)% of these contigs contain snps
with a total of 11 snps
3 contigs containing 36 sequences
2(66.67)% of these contigs contain snps
with a total of 34 snps
2 contigs containing 37 sequences
1(50.00)% of these contigs contain snps
with a total of 1 snps
4 contigs containing 38 sequences
3(75.00)% of these contigs contain snps
with a total of 35 snps
6 contigs containing 40 sequences
6(100.00)% of these contigs contain snps
with a total of 74 snps
6 contigs containing 41 sequences
1(16.67)% of these contigs contain snps
with a total of 7 snps
2 contigs containing 42 sequences
2(100.00)% of these contigs contain snps
with a total of 23 snps
6 contigs containing 43 sequences
6(100.00)% of these contigs contain snps
with a total of 74 snps
2 contigs containing 44 sequences
2(100.00)% of these contigs contain snps
with a total of 6 snps
2 contigs containing 47 sequences
1(50.00)% of these contigs contain snps
with a total of 6 snps
3 contigs containing 48 sequences
3(100.00)% of these contigs contain snps
with a total of 27 snps
2 contigs containing 49 sequences
2(100.00)% of these contigs contain snps
with a total of 26 snps
3 contigs containing 50 sequences
2(66.67)% of these contigs contain snps
with a total of 24 snps
1 contigs containing 51 sequences
1(100.00)% of these contigs contain snps
with a total of 11 snps
3 contigs containing 54 sequences
3(100.00)% of these contigs contain snps
with a total of 24 snps
1 contigs containing 56 sequences
1(100.00)% of these contigs contain snps
with a total of 4 snps
1 contigs containing 57 sequences
1(100.00)% of these contigs contain snps
with a total of 13 snps
1 contigs containing 59 sequences
1(100.00)% of these contigs contain snps
with a total of 4 snps
1 contigs containing 62 sequences
(0.00)% of these contigs contain snps
1 contigs containing 63 sequences
1(100.00)% of these contigs contain snps
with a total of 12 snps
2 contigs containing 66 sequences
2(100.00)% of these contigs contain snps
with a total of 11 snps
3 contigs containing 67 sequences
2(66.67)% of these contigs contain snps
with a total of 26 snps
2 contigs containing 68 sequences
2(100.00)% of these contigs contain snps
with a total of 20 snps
2 contigs containing 70 sequences
2(100.00)% of these contigs contain snps
with a total of 20 snps
1 contigs containing 73 sequences
1(100.00)% of these contigs contain snps
with a total of 29 snps
1 contigs containing 76 sequences
1(100.00)% of these contigs contain snps
with a total of 17 snps
1 contigs containing 82 sequences
1(100.00)% of these contigs contain snps
with a total of 29 snps
1 contigs containing 83 sequences
1(100.00)% of these contigs contain snps
with a total of 11 snps
1 contigs containing 85 sequences
1(100.00)% of these contigs contain snps
with a total of 1 snps
2 contigs containing 86 sequences
2(100.00)% of these contigs contain snps
with a total of 47 snps
1 contigs containing 87 sequences
1(100.00)% of these contigs contain snps
with a total of 19 snps
1 contigs containing 88 sequences
1(100.00)% of these contigs contain snps
with a total of 8 snps
1 contigs containing 89 sequences
1(100.00)% of these contigs contain snps
with a total of 16 snps
1 contigs containing 92 sequences
1(100.00)% of these contigs contain snps
with a total of 16 snps
2 contigs containing 94 sequences
2(100.00)% of these contigs contain snps
with a total of 16 snps
1 contigs containing 95 sequences
1(100.00)% of these contigs contain snps
with a total of 9 snps
1 contigs containing 99 sequences
1(100.00)% of these contigs contain snps
with a total of 44 snps
1 contigs containing 104 sequences
1(100.00)% of these contigs contain snps
with a total of 15 snps
1 contigs containing 107 sequences
1(100.00)% of these contigs contain snps
with a total of 13 snps
2 contigs containing 108 sequences
2(100.00)% of these contigs contain snps
with a total of 49 snps
1 contigs containing 112 sequences
1(100.00)% of these contigs contain snps
with a total of 20 snps
1 contigs containing 113 sequences
1(100.00)% of these contigs contain snps
with a total of 4 snps
2 contigs containing 114 sequences
2(100.00)% of these contigs contain snps
with a total of 47 snps
1 contigs containing 115 sequences
1(100.00)% of these contigs contain snps
with a total of 17 snps
1 contigs containing 123 sequences
1(100.00)% of these contigs contain snps
with a total of 14 snps
2 contigs containing 175 sequences
2(100.00)% of these contigs contain snps
with a total of 69 snps
1 contigs containing 183 sequences
1(100.00)% of these contigs contain snps
with a total of 27 snps
1 contigs containing 190 sequences
1(100.00)% of these contigs contain snps
with a total of 24 snps
1 contigs containing 229 sequences
1(100.00)% of these contigs contain snps
with a total of 13 snps
1 contigs containing 245 sequences
1(100.00)% of these contigs contain snps
with a total of 27 snps
2 contigs containing 249 sequences
2(100.00)% of these contigs contain snps
with a total of 56 snps
1 contigs containing 283 sequences
1(100.00)% of these contigs contain snps
with a total of 27 snps
1 contigs containing 400 sequences
1(100.00)% of these contigs contain snps
with a total of 43 snps
1 contigs containing 621 sequences
1(100.00)% of these contigs contain snps
with a total of 103 snps
1 contigs containing 1341 sequences
1(100.00)% of these contigs contain snps
with a total of 157 snps


(C)
Plant Biotechnology Centre Australia, DPI Comments/suggestions to Dave Edwards Dave.Edwards.vic.gov.au Best viewed at 800x600+ 