PBC Bioinformatics

       
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RESULTS SUMMARY
View contig list


  Total sequences analysed = 33006

  Sequences sorted into 5047 contigs and 0 singletons

  Total SNPs detected = 3776

  Total consensus size = 4211138 bp

  SNP frequency = 0.09/100 bp

  Smallest contig = 2 sequences

  Total transitions = 1838

  Total transversions = 1050

  Total indels = 888

  2104 contigs containing 2 sequences

    (0.00)% of these contigs contain snps

  921 contigs containing 3 sequences

    (0.00)% of these contigs contain snps

  468 contigs containing 4 sequences

    107(22.86)% of these contigs contain snps

    with a total of 474 snps

  356 contigs containing 5 sequences

    (0.00)% of these contigs contain snps

  216 contigs containing 6 sequences

    25(11.57)% of these contigs contain snps

    with a total of 96 snps

  152 contigs containing 7 sequences

    37(24.34)% of these contigs contain snps

    with a total of 174 snps

  100 contigs containing 8 sequences

    41(41.00)% of these contigs contain snps

    with a total of 211 snps

  102 contigs containing 9 sequences

    9(8.82)% of these contigs contain snps

    with a total of 45 snps

  69 contigs containing 10 sequences

    18(26.09)% of these contigs contain snps

    with a total of 68 snps

  72 contigs containing 11 sequences

    21(29.17)% of these contigs contain snps

    with a total of 93 snps

  58 contigs containing 12 sequences

    23(39.66)% of these contigs contain snps

    with a total of 151 snps

  46 contigs containing 13 sequences

    8(17.39)% of these contigs contain snps

    with a total of 18 snps

  38 contigs containing 14 sequences

    15(39.47)% of these contigs contain snps

    with a total of 72 snps

  26 contigs containing 15 sequences

    9(34.62)% of these contigs contain snps

    with a total of 40 snps

  19 contigs containing 16 sequences

    6(31.58)% of these contigs contain snps

    with a total of 31 snps

  20 contigs containing 17 sequences

    9(45.00)% of these contigs contain snps

    with a total of 26 snps

  19 contigs containing 18 sequences

    8(42.11)% of these contigs contain snps

    with a total of 51 snps

  30 contigs containing 19 sequences

    17(56.67)% of these contigs contain snps

    with a total of 132 snps

  20 contigs containing 20 sequences

    9(45.00)% of these contigs contain snps

    with a total of 67 snps

  16 contigs containing 21 sequences

    7(43.75)% of these contigs contain snps

    with a total of 27 snps

  14 contigs containing 22 sequences

    10(71.43)% of these contigs contain snps

    with a total of 93 snps

  10 contigs containing 23 sequences

    7(70.00)% of these contigs contain snps

    with a total of 60 snps

  16 contigs containing 24 sequences

    10(62.50)% of these contigs contain snps

    with a total of 56 snps

  4 contigs containing 25 sequences

    1(25.00)% of these contigs contain snps

    with a total of 2 snps

  5 contigs containing 26 sequences

    4(80.00)% of these contigs contain snps

    with a total of 34 snps

  8 contigs containing 27 sequences

    3(37.50)% of these contigs contain snps

    with a total of 23 snps

  3 contigs containing 28 sequences

    2(66.67)% of these contigs contain snps

    with a total of 7 snps

  7 contigs containing 29 sequences

    3(42.86)% of these contigs contain snps

    with a total of 21 snps

  5 contigs containing 30 sequences

    5(100.00)% of these contigs contain snps

    with a total of 26 snps

  5 contigs containing 31 sequences

    4(80.00)% of these contigs contain snps

    with a total of 38 snps

  5 contigs containing 32 sequences

    4(80.00)% of these contigs contain snps

    with a total of 42 snps

  6 contigs containing 33 sequences

    3(50.00)% of these contigs contain snps

    with a total of 35 snps

  10 contigs containing 34 sequences

    7(70.00)% of these contigs contain snps

    with a total of 83 snps

  1 contigs containing 35 sequences

    1(100.00)% of these contigs contain snps

    with a total of 11 snps

  3 contigs containing 36 sequences

    2(66.67)% of these contigs contain snps

    with a total of 34 snps

  2 contigs containing 37 sequences

    1(50.00)% of these contigs contain snps

    with a total of 1 snps

  4 contigs containing 38 sequences

    3(75.00)% of these contigs contain snps

    with a total of 35 snps

  6 contigs containing 40 sequences

    6(100.00)% of these contigs contain snps

    with a total of 74 snps

  6 contigs containing 41 sequences

    1(16.67)% of these contigs contain snps

    with a total of 7 snps

  2 contigs containing 42 sequences

    2(100.00)% of these contigs contain snps

    with a total of 23 snps

  6 contigs containing 43 sequences

    6(100.00)% of these contigs contain snps

    with a total of 74 snps

  2 contigs containing 44 sequences

    2(100.00)% of these contigs contain snps

    with a total of 6 snps

  2 contigs containing 47 sequences

    1(50.00)% of these contigs contain snps

    with a total of 6 snps

  3 contigs containing 48 sequences

    3(100.00)% of these contigs contain snps

    with a total of 27 snps

  2 contigs containing 49 sequences

    2(100.00)% of these contigs contain snps

    with a total of 26 snps

  3 contigs containing 50 sequences

    2(66.67)% of these contigs contain snps

    with a total of 24 snps

  1 contigs containing 51 sequences

    1(100.00)% of these contigs contain snps

    with a total of 11 snps

  3 contigs containing 54 sequences

    3(100.00)% of these contigs contain snps

    with a total of 24 snps

  1 contigs containing 56 sequences

    1(100.00)% of these contigs contain snps

    with a total of 4 snps

  1 contigs containing 57 sequences

    1(100.00)% of these contigs contain snps

    with a total of 13 snps

  1 contigs containing 59 sequences

    1(100.00)% of these contigs contain snps

    with a total of 4 snps

  1 contigs containing 62 sequences

    (0.00)% of these contigs contain snps

  1 contigs containing 63 sequences

    1(100.00)% of these contigs contain snps

    with a total of 12 snps

  2 contigs containing 66 sequences

    2(100.00)% of these contigs contain snps

    with a total of 11 snps

  3 contigs containing 67 sequences

    2(66.67)% of these contigs contain snps

    with a total of 26 snps

  2 contigs containing 68 sequences

    2(100.00)% of these contigs contain snps

    with a total of 20 snps

  2 contigs containing 70 sequences

    2(100.00)% of these contigs contain snps

    with a total of 20 snps

  1 contigs containing 73 sequences

    1(100.00)% of these contigs contain snps

    with a total of 29 snps

  1 contigs containing 76 sequences

    1(100.00)% of these contigs contain snps

    with a total of 17 snps

  1 contigs containing 82 sequences

    1(100.00)% of these contigs contain snps

    with a total of 29 snps

  1 contigs containing 83 sequences

    1(100.00)% of these contigs contain snps

    with a total of 11 snps

  1 contigs containing 85 sequences

    1(100.00)% of these contigs contain snps

    with a total of 1 snps

  2 contigs containing 86 sequences

    2(100.00)% of these contigs contain snps

    with a total of 47 snps

  1 contigs containing 87 sequences

    1(100.00)% of these contigs contain snps

    with a total of 19 snps

  1 contigs containing 88 sequences

    1(100.00)% of these contigs contain snps

    with a total of 8 snps

  1 contigs containing 89 sequences

    1(100.00)% of these contigs contain snps

    with a total of 16 snps

  1 contigs containing 92 sequences

    1(100.00)% of these contigs contain snps

    with a total of 16 snps

  2 contigs containing 94 sequences

    2(100.00)% of these contigs contain snps

    with a total of 16 snps

  1 contigs containing 95 sequences

    1(100.00)% of these contigs contain snps

    with a total of 9 snps

  1 contigs containing 99 sequences

    1(100.00)% of these contigs contain snps

    with a total of 44 snps

  1 contigs containing 104 sequences

    1(100.00)% of these contigs contain snps

    with a total of 15 snps

  1 contigs containing 107 sequences

    1(100.00)% of these contigs contain snps

    with a total of 13 snps

  2 contigs containing 108 sequences

    2(100.00)% of these contigs contain snps

    with a total of 49 snps

  1 contigs containing 112 sequences

    1(100.00)% of these contigs contain snps

    with a total of 20 snps

  1 contigs containing 113 sequences

    1(100.00)% of these contigs contain snps

    with a total of 4 snps

  2 contigs containing 114 sequences

    2(100.00)% of these contigs contain snps

    with a total of 47 snps

  1 contigs containing 115 sequences

    1(100.00)% of these contigs contain snps

    with a total of 17 snps

  1 contigs containing 123 sequences

    1(100.00)% of these contigs contain snps

    with a total of 14 snps

  2 contigs containing 175 sequences

    2(100.00)% of these contigs contain snps

    with a total of 69 snps

  1 contigs containing 183 sequences

    1(100.00)% of these contigs contain snps

    with a total of 27 snps

  1 contigs containing 190 sequences

    1(100.00)% of these contigs contain snps

    with a total of 24 snps

  1 contigs containing 229 sequences

    1(100.00)% of these contigs contain snps

    with a total of 13 snps

  1 contigs containing 245 sequences

    1(100.00)% of these contigs contain snps

    with a total of 27 snps

  2 contigs containing 249 sequences

    2(100.00)% of these contigs contain snps

    with a total of 56 snps

  1 contigs containing 283 sequences

    1(100.00)% of these contigs contain snps

    with a total of 27 snps

  1 contigs containing 400 sequences

    1(100.00)% of these contigs contain snps

    with a total of 43 snps

  1 contigs containing 621 sequences

    1(100.00)% of these contigs contain snps

    with a total of 103 snps

  1 contigs containing 1341 sequences

    1(100.00)% of these contigs contain snps

    with a total of 157 snps


        Credits & Disclaimer        
               
               
(C) Plant Biotechnology Centre Australia, DPI
Comments/suggestions to Dave Edwards
Dave.Edwards.vic.gov.au
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