PBC Bioinformatics

       
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RESULTS SUMMARY
View contig list


  Total sequences analysed = 68848

  Sequences sorted into 8818 contigs and 0 singletons

  Total SNPs detected = 5284

  Total consensus size = 8118336 bp

  SNP frequency = 0.07/100 bp

  Smallest contig = 2 sequences

  Total transitions = 2345

  Total transversions = 1353

  Total indels = 1586

  3332 contigs containing 2 sequences

    (0.00)% of these contigs contain snps

  1497 contigs containing 3 sequences

    (0.00)% of these contigs contain snps

  869 contigs containing 4 sequences

    133(15.30)% of these contigs contain snps

    with a total of 584 snps

  600 contigs containing 5 sequences

    (0.00)% of these contigs contain snps

  431 contigs containing 6 sequences

    25(5.80)% of these contigs contain snps

    with a total of 69 snps

  321 contigs containing 7 sequences

    37(11.53)% of these contigs contain snps

    with a total of 148 snps

  198 contigs containing 8 sequences

    41(20.71)% of these contigs contain snps

    with a total of 230 snps

  170 contigs containing 9 sequences

    4(2.35)% of these contigs contain snps

    with a total of 11 snps

  175 contigs containing 10 sequences

    29(16.57)% of these contigs contain snps

    with a total of 90 snps

  125 contigs containing 11 sequences

    22(17.60)% of these contigs contain snps

    with a total of 124 snps

  94 contigs containing 12 sequences

    27(28.72)% of these contigs contain snps

    with a total of 93 snps

  102 contigs containing 13 sequences

    17(16.67)% of these contigs contain snps

    with a total of 64 snps

  74 contigs containing 14 sequences

    11(14.86)% of these contigs contain snps

    with a total of 60 snps

  69 contigs containing 15 sequences

    9(13.04)% of these contigs contain snps

    with a total of 49 snps

  69 contigs containing 16 sequences

    12(17.39)% of these contigs contain snps

    with a total of 68 snps

  56 contigs containing 17 sequences

    8(14.29)% of these contigs contain snps

    with a total of 33 snps

  40 contigs containing 18 sequences

    14(35.00)% of these contigs contain snps

    with a total of 66 snps

  40 contigs containing 19 sequences

    13(32.50)% of these contigs contain snps

    with a total of 74 snps

  33 contigs containing 20 sequences

    10(30.30)% of these contigs contain snps

    with a total of 43 snps

  30 contigs containing 21 sequences

    5(16.67)% of these contigs contain snps

    with a total of 37 snps

  31 contigs containing 22 sequences

    7(22.58)% of these contigs contain snps

    with a total of 46 snps

  19 contigs containing 23 sequences

    7(36.84)% of these contigs contain snps

    with a total of 21 snps

  27 contigs containing 24 sequences

    9(33.33)% of these contigs contain snps

    with a total of 53 snps

  22 contigs containing 25 sequences

    5(22.73)% of these contigs contain snps

    with a total of 16 snps

  21 contigs containing 26 sequences

    4(19.05)% of these contigs contain snps

    with a total of 24 snps

  14 contigs containing 27 sequences

    2(14.29)% of these contigs contain snps

    with a total of 9 snps

  14 contigs containing 28 sequences

    8(57.14)% of these contigs contain snps

    with a total of 28 snps

  16 contigs containing 29 sequences

    6(37.50)% of these contigs contain snps

    with a total of 41 snps

  14 contigs containing 30 sequences

    8(57.14)% of these contigs contain snps

    with a total of 36 snps

  19 contigs containing 31 sequences

    11(57.89)% of these contigs contain snps

    with a total of 97 snps

  8 contigs containing 32 sequences

    4(50.00)% of these contigs contain snps

    with a total of 21 snps

  6 contigs containing 33 sequences

    4(66.67)% of these contigs contain snps

    with a total of 10 snps

  15 contigs containing 34 sequences

    12(80.00)% of these contigs contain snps

    with a total of 70 snps

  14 contigs containing 35 sequences

    7(50.00)% of these contigs contain snps

    with a total of 46 snps

  12 contigs containing 36 sequences

    8(66.67)% of these contigs contain snps

    with a total of 75 snps

  9 contigs containing 37 sequences

    7(77.78)% of these contigs contain snps

    with a total of 38 snps

  7 contigs containing 38 sequences

    4(57.14)% of these contigs contain snps

    with a total of 40 snps

  9 contigs containing 39 sequences

    7(77.78)% of these contigs contain snps

    with a total of 69 snps

  7 contigs containing 40 sequences

    5(71.43)% of these contigs contain snps

    with a total of 48 snps

  11 contigs containing 41 sequences

    8(72.73)% of these contigs contain snps

    with a total of 64 snps

  7 contigs containing 42 sequences

    4(57.14)% of these contigs contain snps

    with a total of 39 snps

  7 contigs containing 43 sequences

    5(71.43)% of these contigs contain snps

    with a total of 56 snps

  8 contigs containing 44 sequences

    6(75.00)% of these contigs contain snps

    with a total of 44 snps

  8 contigs containing 45 sequences

    6(75.00)% of these contigs contain snps

    with a total of 64 snps

  4 contigs containing 46 sequences

    1(25.00)% of these contigs contain snps

    with a total of 3 snps

  6 contigs containing 47 sequences

    6(100.00)% of these contigs contain snps

    with a total of 41 snps

  6 contigs containing 48 sequences

    4(66.67)% of these contigs contain snps

    with a total of 26 snps

  3 contigs containing 49 sequences

    2(66.67)% of these contigs contain snps

    with a total of 13 snps

  4 contigs containing 50 sequences

    3(75.00)% of these contigs contain snps

    with a total of 11 snps

  6 contigs containing 51 sequences

    4(66.67)% of these contigs contain snps

    with a total of 28 snps

  1 contigs containing 52 sequences

    1(100.00)% of these contigs contain snps

    with a total of 2 snps

  3 contigs containing 53 sequences

    2(66.67)% of these contigs contain snps

    with a total of 21 snps

  2 contigs containing 54 sequences

    2(100.00)% of these contigs contain snps

    with a total of 16 snps

  8 contigs containing 55 sequences

    6(75.00)% of these contigs contain snps

    with a total of 59 snps

  6 contigs containing 57 sequences

    5(83.33)% of these contigs contain snps

    with a total of 28 snps

  4 contigs containing 58 sequences

    2(50.00)% of these contigs contain snps

    with a total of 22 snps

  3 contigs containing 59 sequences

    2(66.67)% of these contigs contain snps

    with a total of 5 snps

  4 contigs containing 60 sequences

    4(100.00)% of these contigs contain snps

    with a total of 27 snps

  4 contigs containing 61 sequences

    3(75.00)% of these contigs contain snps

    with a total of 37 snps

  2 contigs containing 62 sequences

    2(100.00)% of these contigs contain snps

    with a total of 24 snps

  5 contigs containing 63 sequences

    5(100.00)% of these contigs contain snps

    with a total of 60 snps

  4 contigs containing 64 sequences

    2(50.00)% of these contigs contain snps

    with a total of 24 snps

  1 contigs containing 65 sequences

    1(100.00)% of these contigs contain snps

    with a total of 6 snps

  2 contigs containing 66 sequences

    2(100.00)% of these contigs contain snps

    with a total of 13 snps

  4 contigs containing 67 sequences

    2(50.00)% of these contigs contain snps

    with a total of 28 snps

  1 contigs containing 69 sequences

    1(100.00)% of these contigs contain snps

    with a total of 8 snps

  2 contigs containing 72 sequences

    2(100.00)% of these contigs contain snps

    with a total of 19 snps

  3 contigs containing 73 sequences

    3(100.00)% of these contigs contain snps

    with a total of 56 snps

  2 contigs containing 74 sequences

    2(100.00)% of these contigs contain snps

    with a total of 22 snps

  1 contigs containing 77 sequences

    1(100.00)% of these contigs contain snps

    with a total of 14 snps

  2 contigs containing 79 sequences

    2(100.00)% of these contigs contain snps

    with a total of 23 snps

  1 contigs containing 80 sequences

    1(100.00)% of these contigs contain snps

    with a total of 4 snps

  1 contigs containing 81 sequences

    1(100.00)% of these contigs contain snps

    with a total of 7 snps

  2 contigs containing 82 sequences

    2(100.00)% of these contigs contain snps

    with a total of 32 snps

  1 contigs containing 83 sequences

    (0.00)% of these contigs contain snps

  1 contigs containing 85 sequences

    1(100.00)% of these contigs contain snps

    with a total of 16 snps

  1 contigs containing 87 sequences

    1(100.00)% of these contigs contain snps

    with a total of 1 snps

  1 contigs containing 88 sequences

    1(100.00)% of these contigs contain snps

    with a total of 21 snps

  1 contigs containing 92 sequences

    1(100.00)% of these contigs contain snps

    with a total of 4 snps

  3 contigs containing 93 sequences

    3(100.00)% of these contigs contain snps

    with a total of 32 snps

  2 contigs containing 94 sequences

    1(50.00)% of these contigs contain snps

    with a total of 2 snps

  1 contigs containing 96 sequences

    1(100.00)% of these contigs contain snps

    with a total of 2 snps

  1 contigs containing 97 sequences

    1(100.00)% of these contigs contain snps

    with a total of 18 snps

  1 contigs containing 100 sequences

    1(100.00)% of these contigs contain snps

    with a total of 17 snps

  1 contigs containing 102 sequences

    1(100.00)% of these contigs contain snps

    with a total of 3 snps

  3 contigs containing 103 sequences

    3(100.00)% of these contigs contain snps

    with a total of 15 snps

  3 contigs containing 104 sequences

    3(100.00)% of these contigs contain snps

    with a total of 42 snps

  2 contigs containing 105 sequences

    2(100.00)% of these contigs contain snps

    with a total of 41 snps

  1 contigs containing 106 sequences

    1(100.00)% of these contigs contain snps

    with a total of 17 snps

  1 contigs containing 107 sequences

    1(100.00)% of these contigs contain snps

    with a total of 28 snps

  1 contigs containing 108 sequences

    1(100.00)% of these contigs contain snps

    with a total of 25 snps

  1 contigs containing 109 sequences

    1(100.00)% of these contigs contain snps

    with a total of 18 snps

  2 contigs containing 111 sequences

    2(100.00)% of these contigs contain snps

    with a total of 23 snps

  2 contigs containing 112 sequences

    2(100.00)% of these contigs contain snps

    with a total of 9 snps

  1 contigs containing 114 sequences

    1(100.00)% of these contigs contain snps

    with a total of 24 snps

  1 contigs containing 116 sequences

    1(100.00)% of these contigs contain snps

    with a total of 21 snps

  1 contigs containing 117 sequences

    1(100.00)% of these contigs contain snps

    with a total of 2 snps

  1 contigs containing 118 sequences

    1(100.00)% of these contigs contain snps

    with a total of 7 snps

  1 contigs containing 120 sequences

    1(100.00)% of these contigs contain snps

    with a total of 19 snps

  1 contigs containing 123 sequences

    1(100.00)% of these contigs contain snps

    with a total of 14 snps

  1 contigs containing 131 sequences

    1(100.00)% of these contigs contain snps

    with a total of 26 snps

  1 contigs containing 136 sequences

    1(100.00)% of these contigs contain snps

    with a total of 19 snps

  2 contigs containing 137 sequences

    2(100.00)% of these contigs contain snps

    with a total of 56 snps

  1 contigs containing 147 sequences

    1(100.00)% of these contigs contain snps

    with a total of 20 snps

  1 contigs containing 150 sequences

    1(100.00)% of these contigs contain snps

    with a total of 2 snps

  1 contigs containing 153 sequences

    1(100.00)% of these contigs contain snps

    with a total of 18 snps

  1 contigs containing 156 sequences

    1(100.00)% of these contigs contain snps

    with a total of 16 snps

  1 contigs containing 161 sequences

    1(100.00)% of these contigs contain snps

    with a total of 18 snps

  1 contigs containing 164 sequences

    1(100.00)% of these contigs contain snps

    with a total of 16 snps

  1 contigs containing 165 sequences

    1(100.00)% of these contigs contain snps

    with a total of 29 snps

  1 contigs containing 181 sequences

    1(100.00)% of these contigs contain snps

    with a total of 33 snps

  1 contigs containing 182 sequences

    1(100.00)% of these contigs contain snps

    with a total of 30 snps

  1 contigs containing 185 sequences

    1(100.00)% of these contigs contain snps

    with a total of 22 snps

  1 contigs containing 194 sequences

    1(100.00)% of these contigs contain snps

    with a total of 14 snps

  1 contigs containing 196 sequences

    1(100.00)% of these contigs contain snps

    with a total of 34 snps

  1 contigs containing 205 sequences

    1(100.00)% of these contigs contain snps

    with a total of 30 snps

  3 contigs containing 211 sequences

    3(100.00)% of these contigs contain snps

    with a total of 72 snps

  1 contigs containing 234 sequences

    1(100.00)% of these contigs contain snps

    with a total of 49 snps

  1 contigs containing 250 sequences

    1(100.00)% of these contigs contain snps

    with a total of 12 snps

  1 contigs containing 254 sequences

    1(100.00)% of these contigs contain snps

    with a total of 23 snps

  1 contigs containing 259 sequences

    1(100.00)% of these contigs contain snps

    with a total of 20 snps

  1 contigs containing 268 sequences

    1(100.00)% of these contigs contain snps

    with a total of 16 snps

  1 contigs containing 316 sequences

    1(100.00)% of these contigs contain snps

    with a total of 36 snps

  1 contigs containing 329 sequences

    1(100.00)% of these contigs contain snps

    with a total of 39 snps

  1 contigs containing 339 sequences

    1(100.00)% of these contigs contain snps

    with a total of 7 snps

  1 contigs containing 380 sequences

    1(100.00)% of these contigs contain snps

    with a total of 68 snps

  1 contigs containing 398 sequences

    1(100.00)% of these contigs contain snps

    with a total of 45 snps

  1 contigs containing 515 sequences

    1(100.00)% of these contigs contain snps

    with a total of 43 snps

  1 contigs containing 641 sequences

    1(100.00)% of these contigs contain snps

    with a total of 65 snps

  1 contigs containing 843 sequences

    1(100.00)% of these contigs contain snps

    with a total of 68 snps

  1 contigs containing 1339 sequences

    1(100.00)% of these contigs contain snps

    with a total of 157 snps

  1 contigs containing 1623 sequences

    1(100.00)% of these contigs contain snps

    with a total of 183 snps


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(C) Plant Biotechnology Centre Australia, DPI
Comments/suggestions to Dave Edwards
Dave.Edwards.vic.gov.au
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