RESULTS SUMMARY

View contig list

Total sequences analysed = 68848

Sequences sorted into 8818 contigs and 0 singletons

Total SNPs detected = 5284

Total consensus size = 8118336 bp

SNP frequency = 0.07/100 bp

Smallest contig = 2 sequences

Total transitions = 2345

Total transversions = 1353

Total indels = 1586

3332 contigs containing 2 sequences

(0.00)% of these contigs contain snps

1497 contigs containing 3 sequences

(0.00)% of these contigs contain snps

869 contigs containing 4 sequences

133(15.30)% of these contigs contain snps

with a total of 584 snps

600 contigs containing 5 sequences

(0.00)% of these contigs contain snps

431 contigs containing 6 sequences

25(5.80)% of these contigs contain snps

with a total of 69 snps

321 contigs containing 7 sequences

37(11.53)% of these contigs contain snps

with a total of 148 snps

198 contigs containing 8 sequences

41(20.71)% of these contigs contain snps

with a total of 230 snps

170 contigs containing 9 sequences

4(2.35)% of these contigs contain snps

with a total of 11 snps

175 contigs containing 10 sequences

29(16.57)% of these contigs contain snps

with a total of 90 snps

125 contigs containing 11 sequences

22(17.60)% of these contigs contain snps

with a total of 124 snps

94 contigs containing 12 sequences

27(28.72)% of these contigs contain snps

with a total of 93 snps

102 contigs containing 13 sequences

17(16.67)% of these contigs contain snps

with a total of 64 snps

74 contigs containing 14 sequences

11(14.86)% of these contigs contain snps

with a total of 60 snps

69 contigs containing 15 sequences

9(13.04)% of these contigs contain snps

with a total of 49 snps

69 contigs containing 16 sequences

12(17.39)% of these contigs contain snps

with a total of 68 snps

56 contigs containing 17 sequences

8(14.29)% of these contigs contain snps

with a total of 33 snps

40 contigs containing 18 sequences

14(35.00)% of these contigs contain snps

with a total of 66 snps

40 contigs containing 19 sequences

13(32.50)% of these contigs contain snps

with a total of 74 snps

33 contigs containing 20 sequences

10(30.30)% of these contigs contain snps

with a total of 43 snps

30 contigs containing 21 sequences

5(16.67)% of these contigs contain snps

with a total of 37 snps

31 contigs containing 22 sequences

7(22.58)% of these contigs contain snps

with a total of 46 snps

19 contigs containing 23 sequences

7(36.84)% of these contigs contain snps

with a total of 21 snps

27 contigs containing 24 sequences

9(33.33)% of these contigs contain snps

with a total of 53 snps

22 contigs containing 25 sequences

5(22.73)% of these contigs contain snps

with a total of 16 snps

21 contigs containing 26 sequences

4(19.05)% of these contigs contain snps

with a total of 24 snps

14 contigs containing 27 sequences

2(14.29)% of these contigs contain snps

with a total of 9 snps

14 contigs containing 28 sequences

8(57.14)% of these contigs contain snps

with a total of 28 snps

16 contigs containing 29 sequences

6(37.50)% of these contigs contain snps

with a total of 41 snps

14 contigs containing 30 sequences

8(57.14)% of these contigs contain snps

with a total of 36 snps

19 contigs containing 31 sequences

11(57.89)% of these contigs contain snps

with a total of 97 snps

8 contigs containing 32 sequences

4(50.00)% of these contigs contain snps

with a total of 21 snps

6 contigs containing 33 sequences

4(66.67)% of these contigs contain snps

with a total of 10 snps

15 contigs containing 34 sequences

12(80.00)% of these contigs contain snps

with a total of 70 snps

14 contigs containing 35 sequences

7(50.00)% of these contigs contain snps

with a total of 46 snps

12 contigs containing 36 sequences

8(66.67)% of these contigs contain snps

with a total of 75 snps

9 contigs containing 37 sequences

7(77.78)% of these contigs contain snps

with a total of 38 snps

7 contigs containing 38 sequences

4(57.14)% of these contigs contain snps

with a total of 40 snps

9 contigs containing 39 sequences

7(77.78)% of these contigs contain snps

with a total of 69 snps

7 contigs containing 40 sequences

5(71.43)% of these contigs contain snps

with a total of 48 snps

11 contigs containing 41 sequences

8(72.73)% of these contigs contain snps

with a total of 64 snps

7 contigs containing 42 sequences

4(57.14)% of these contigs contain snps

with a total of 39 snps

7 contigs containing 43 sequences

5(71.43)% of these contigs contain snps

with a total of 56 snps

8 contigs containing 44 sequences

6(75.00)% of these contigs contain snps

with a total of 44 snps

8 contigs containing 45 sequences

6(75.00)% of these contigs contain snps

with a total of 64 snps

4 contigs containing 46 sequences

1(25.00)% of these contigs contain snps

with a total of 3 snps

6 contigs containing 47 sequences

6(100.00)% of these contigs contain snps

with a total of 41 snps

6 contigs containing 48 sequences

4(66.67)% of these contigs contain snps

with a total of 26 snps

3 contigs containing 49 sequences

2(66.67)% of these contigs contain snps

with a total of 13 snps

4 contigs containing 50 sequences

3(75.00)% of these contigs contain snps

with a total of 11 snps

6 contigs containing 51 sequences

4(66.67)% of these contigs contain snps

with a total of 28 snps

1 contigs containing 52 sequences

1(100.00)% of these contigs contain snps

with a total of 2 snps

3 contigs containing 53 sequences

2(66.67)% of these contigs contain snps

with a total of 21 snps

2 contigs containing 54 sequences

2(100.00)% of these contigs contain snps

with a total of 16 snps

8 contigs containing 55 sequences

6(75.00)% of these contigs contain snps

with a total of 59 snps

6 contigs containing 57 sequences

5(83.33)% of these contigs contain snps

with a total of 28 snps

4 contigs containing 58 sequences

2(50.00)% of these contigs contain snps

with a total of 22 snps

3 contigs containing 59 sequences

2(66.67)% of these contigs contain snps

with a total of 5 snps

4 contigs containing 60 sequences

4(100.00)% of these contigs contain snps

with a total of 27 snps

4 contigs containing 61 sequences

3(75.00)% of these contigs contain snps

with a total of 37 snps

2 contigs containing 62 sequences

2(100.00)% of these contigs contain snps

with a total of 24 snps

5 contigs containing 63 sequences

5(100.00)% of these contigs contain snps

with a total of 60 snps

4 contigs containing 64 sequences

2(50.00)% of these contigs contain snps

with a total of 24 snps

1 contigs containing 65 sequences

1(100.00)% of these contigs contain snps

with a total of 6 snps

2 contigs containing 66 sequences

2(100.00)% of these contigs contain snps

with a total of 13 snps

4 contigs containing 67 sequences

2(50.00)% of these contigs contain snps

with a total of 28 snps

1 contigs containing 69 sequences

1(100.00)% of these contigs contain snps

with a total of 8 snps

2 contigs containing 72 sequences

2(100.00)% of these contigs contain snps

with a total of 19 snps

3 contigs containing 73 sequences

3(100.00)% of these contigs contain snps

with a total of 56 snps

2 contigs containing 74 sequences

2(100.00)% of these contigs contain snps

with a total of 22 snps

1 contigs containing 77 sequences

1(100.00)% of these contigs contain snps

with a total of 14 snps

2 contigs containing 79 sequences

2(100.00)% of these contigs contain snps

with a total of 23 snps

1 contigs containing 80 sequences

1(100.00)% of these contigs contain snps

with a total of 4 snps

1 contigs containing 81 sequences

1(100.00)% of these contigs contain snps

with a total of 7 snps

2 contigs containing 82 sequences

2(100.00)% of these contigs contain snps

with a total of 32 snps

1 contigs containing 83 sequences

(0.00)% of these contigs contain snps

1 contigs containing 85 sequences

1(100.00)% of these contigs contain snps

with a total of 16 snps

1 contigs containing 87 sequences

1(100.00)% of these contigs contain snps

with a total of 1 snps

1 contigs containing 88 sequences

1(100.00)% of these contigs contain snps

with a total of 21 snps

1 contigs containing 92 sequences

1(100.00)% of these contigs contain snps

with a total of 4 snps

3 contigs containing 93 sequences

3(100.00)% of these contigs contain snps

with a total of 32 snps

2 contigs containing 94 sequences

1(50.00)% of these contigs contain snps

with a total of 2 snps

1 contigs containing 96 sequences

1(100.00)% of these contigs contain snps

with a total of 2 snps

1 contigs containing 97 sequences

1(100.00)% of these contigs contain snps

with a total of 18 snps

1 contigs containing 100 sequences

1(100.00)% of these contigs contain snps

with a total of 17 snps

1 contigs containing 102 sequences

1(100.00)% of these contigs contain snps

with a total of 3 snps

3 contigs containing 103 sequences

3(100.00)% of these contigs contain snps

with a total of 15 snps

3 contigs containing 104 sequences

3(100.00)% of these contigs contain snps

with a total of 42 snps

2 contigs containing 105 sequences

2(100.00)% of these contigs contain snps

with a total of 41 snps

1 contigs containing 106 sequences

1(100.00)% of these contigs contain snps

with a total of 17 snps

1 contigs containing 107 sequences

1(100.00)% of these contigs contain snps

with a total of 28 snps

1 contigs containing 108 sequences

1(100.00)% of these contigs contain snps

with a total of 25 snps

1 contigs containing 109 sequences

1(100.00)% of these contigs contain snps

with a total of 18 snps

2 contigs containing 111 sequences

2(100.00)% of these contigs contain snps

with a total of 23 snps

2 contigs containing 112 sequences

2(100.00)% of these contigs contain snps

with a total of 9 snps

1 contigs containing 114 sequences

1(100.00)% of these contigs contain snps

with a total of 24 snps

1 contigs containing 116 sequences

1(100.00)% of these contigs contain snps

with a total of 21 snps

1 contigs containing 117 sequences

1(100.00)% of these contigs contain snps

with a total of 2 snps

1 contigs containing 118 sequences

1(100.00)% of these contigs contain snps

with a total of 7 snps

1 contigs containing 120 sequences

1(100.00)% of these contigs contain snps

with a total of 19 snps

1 contigs containing 123 sequences

1(100.00)% of these contigs contain snps

with a total of 14 snps

1 contigs containing 131 sequences

1(100.00)% of these contigs contain snps

with a total of 26 snps

1 contigs containing 136 sequences

1(100.00)% of these contigs contain snps

with a total of 19 snps

2 contigs containing 137 sequences

2(100.00)% of these contigs contain snps

with a total of 56 snps

1 contigs containing 147 sequences

1(100.00)% of these contigs contain snps

with a total of 20 snps

1 contigs containing 150 sequences

1(100.00)% of these contigs contain snps

with a total of 2 snps

1 contigs containing 153 sequences

1(100.00)% of these contigs contain snps

with a total of 18 snps

1 contigs containing 156 sequences

1(100.00)% of these contigs contain snps

with a total of 16 snps

1 contigs containing 161 sequences

1(100.00)% of these contigs contain snps

with a total of 18 snps

1 contigs containing 164 sequences

1(100.00)% of these contigs contain snps

with a total of 16 snps

1 contigs containing 165 sequences

1(100.00)% of these contigs contain snps

with a total of 29 snps

1 contigs containing 181 sequences

1(100.00)% of these contigs contain snps

with a total of 33 snps

1 contigs containing 182 sequences

1(100.00)% of these contigs contain snps

with a total of 30 snps

1 contigs containing 185 sequences

1(100.00)% of these contigs contain snps

with a total of 22 snps

1 contigs containing 194 sequences

1(100.00)% of these contigs contain snps

with a total of 14 snps

1 contigs containing 196 sequences

1(100.00)% of these contigs contain snps

with a total of 34 snps

1 contigs containing 205 sequences

1(100.00)% of these contigs contain snps

with a total of 30 snps

3 contigs containing 211 sequences

3(100.00)% of these contigs contain snps

with a total of 72 snps

1 contigs containing 234 sequences

1(100.00)% of these contigs contain snps

with a total of 49 snps

1 contigs containing 250 sequences

1(100.00)% of these contigs contain snps

with a total of 12 snps

1 contigs containing 254 sequences

1(100.00)% of these contigs contain snps

with a total of 23 snps

1 contigs containing 259 sequences

1(100.00)% of these contigs contain snps

with a total of 20 snps

1 contigs containing 268 sequences

1(100.00)% of these contigs contain snps

with a total of 16 snps

1 contigs containing 316 sequences

1(100.00)% of these contigs contain snps

with a total of 36 snps

1 contigs containing 329 sequences

1(100.00)% of these contigs contain snps

with a total of 39 snps

1 contigs containing 339 sequences

1(100.00)% of these contigs contain snps

with a total of 7 snps

1 contigs containing 380 sequences

1(100.00)% of these contigs contain snps

with a total of 68 snps