RESULTS SUMMARY

View contig list

Total sequences analysed = 74038

Sequences sorted into 9179 contigs and 0 singletons

Total SNPs detected = 5852

Total consensus size = 8454286 bp

SNP frequency = 0.07/100 bp

Smallest contig = 2 sequences

Total transitions = 2637

Total transversions = 1525

Total indels = 1690

3424 contigs containing 2 sequences

(0.00)% of these contigs contain snps

1512 contigs containing 3 sequences

(0.00)% of these contigs contain snps

907 contigs containing 4 sequences

140(15.44)% of these contigs contain snps

with a total of 599 snps

655 contigs containing 5 sequences

(0.00)% of these contigs contain snps

443 contigs containing 6 sequences

25(5.64)% of these contigs contain snps

with a total of 75 snps

350 contigs containing 7 sequences

47(13.43)% of these contigs contain snps

with a total of 155 snps

214 contigs containing 8 sequences

45(21.03)% of these contigs contain snps

with a total of 229 snps

182 contigs containing 9 sequences

13(7.14)% of these contigs contain snps

with a total of 63 snps

170 contigs containing 10 sequences

20(11.76)% of these contigs contain snps

with a total of 50 snps

119 contigs containing 11 sequences

24(20.17)% of these contigs contain snps

with a total of 151 snps

126 contigs containing 12 sequences

32(25.40)% of these contigs contain snps

with a total of 177 snps

92 contigs containing 13 sequences

11(11.96)% of these contigs contain snps

with a total of 43 snps

80 contigs containing 14 sequences

12(15.00)% of these contigs contain snps

with a total of 67 snps

65 contigs containing 15 sequences

10(15.38)% of these contigs contain snps

with a total of 27 snps

59 contigs containing 16 sequences

11(18.64)% of these contigs contain snps

with a total of 71 snps

67 contigs containing 17 sequences

12(17.91)% of these contigs contain snps

with a total of 60 snps

51 contigs containing 18 sequences

13(25.49)% of these contigs contain snps

with a total of 51 snps

55 contigs containing 19 sequences

16(29.09)% of these contigs contain snps

with a total of 96 snps

41 contigs containing 20 sequences

17(41.46)% of these contigs contain snps

with a total of 80 snps

31 contigs containing 21 sequences

7(22.58)% of these contigs contain snps

with a total of 27 snps

34 contigs containing 22 sequences

10(29.41)% of these contigs contain snps

with a total of 61 snps

28 contigs containing 23 sequences

9(32.14)% of these contigs contain snps

with a total of 42 snps

22 contigs containing 24 sequences

5(22.73)% of these contigs contain snps

with a total of 28 snps

18 contigs containing 25 sequences

3(16.67)% of these contigs contain snps

with a total of 14 snps

21 contigs containing 26 sequences

10(47.62)% of these contigs contain snps

with a total of 64 snps

23 contigs containing 27 sequences

11(47.83)% of these contigs contain snps

with a total of 65 snps

19 contigs containing 28 sequences

4(21.05)% of these contigs contain snps

with a total of 11 snps

10 contigs containing 29 sequences

4(40.00)% of these contigs contain snps

with a total of 23 snps

19 contigs containing 30 sequences

11(57.89)% of these contigs contain snps

with a total of 37 snps

17 contigs containing 31 sequences

11(64.71)% of these contigs contain snps

with a total of 103 snps

16 contigs containing 32 sequences

9(56.25)% of these contigs contain snps

with a total of 66 snps

8 contigs containing 33 sequences

4(50.00)% of these contigs contain snps

with a total of 33 snps

14 contigs containing 34 sequences

6(42.86)% of these contigs contain snps

with a total of 46 snps

10 contigs containing 35 sequences

7(70.00)% of these contigs contain snps

with a total of 37 snps

11 contigs containing 36 sequences

7(63.64)% of these contigs contain snps

with a total of 52 snps

10 contigs containing 37 sequences

8(80.00)% of these contigs contain snps

with a total of 43 snps

10 contigs containing 38 sequences

7(70.00)% of these contigs contain snps

with a total of 38 snps

8 contigs containing 39 sequences

5(62.50)% of these contigs contain snps

with a total of 25 snps

9 contigs containing 40 sequences

8(88.89)% of these contigs contain snps

with a total of 53 snps

11 contigs containing 41 sequences

8(72.73)% of these contigs contain snps

with a total of 82 snps

10 contigs containing 42 sequences

5(50.00)% of these contigs contain snps

with a total of 46 snps

9 contigs containing 43 sequences

8(88.89)% of these contigs contain snps

with a total of 44 snps

8 contigs containing 44 sequences

7(87.50)% of these contigs contain snps

with a total of 58 snps

4 contigs containing 45 sequences

3(75.00)% of these contigs contain snps

with a total of 15 snps

7 contigs containing 46 sequences

3(42.86)% of these contigs contain snps

with a total of 45 snps

3 contigs containing 47 sequences

3(100.00)% of these contigs contain snps

with a total of 38 snps

8 contigs containing 48 sequences

8(100.00)% of these contigs contain snps

with a total of 65 snps

2 contigs containing 50 sequences

2(100.00)% of these contigs contain snps

with a total of 13 snps

6 contigs containing 51 sequences

4(66.67)% of these contigs contain snps

with a total of 52 snps

7 contigs containing 52 sequences

3(42.86)% of these contigs contain snps

with a total of 21 snps

4 contigs containing 53 sequences

4(100.00)% of these contigs contain snps

with a total of 25 snps

1 contigs containing 54 sequences

1(100.00)% of these contigs contain snps

with a total of 12 snps

3 contigs containing 55 sequences

3(100.00)% of these contigs contain snps

with a total of 11 snps

3 contigs containing 56 sequences

2(66.67)% of these contigs contain snps

with a total of 23 snps

7 contigs containing 57 sequences

5(71.43)% of these contigs contain snps

with a total of 19 snps

4 contigs containing 58 sequences

2(50.00)% of these contigs contain snps

with a total of 9 snps

3 contigs containing 59 sequences

2(66.67)% of these contigs contain snps

with a total of 21 snps

4 contigs containing 60 sequences

4(100.00)% of these contigs contain snps

with a total of 48 snps

5 contigs containing 61 sequences

4(80.00)% of these contigs contain snps

with a total of 21 snps

6 contigs containing 62 sequences

5(83.33)% of these contigs contain snps

with a total of 26 snps

4 contigs containing 63 sequences

2(50.00)% of these contigs contain snps

with a total of 19 snps

3 contigs containing 64 sequences

3(100.00)% of these contigs contain snps

with a total of 32 snps

3 contigs containing 65 sequences

3(100.00)% of these contigs contain snps

with a total of 39 snps

3 contigs containing 66 sequences

3(100.00)% of these contigs contain snps

with a total of 40 snps

3 contigs containing 67 sequences

3(100.00)% of these contigs contain snps

with a total of 26 snps

2 contigs containing 68 sequences

2(100.00)% of these contigs contain snps

with a total of 45 snps

2 contigs containing 69 sequences

1(50.00)% of these contigs contain snps

with a total of 19 snps

2 contigs containing 70 sequences

2(100.00)% of these contigs contain snps

with a total of 28 snps

1 contigs containing 71 sequences

1(100.00)% of these contigs contain snps

with a total of 10 snps

2 contigs containing 72 sequences

2(100.00)% of these contigs contain snps

with a total of 7 snps

5 contigs containing 73 sequences

4(80.00)% of these contigs contain snps

with a total of 66 snps

2 contigs containing 74 sequences

2(100.00)% of these contigs contain snps

with a total of 3 snps

1 contigs containing 75 sequences

1(100.00)% of these contigs contain snps

with a total of 7 snps

1 contigs containing 76 sequences

1(100.00)% of these contigs contain snps

with a total of 1 snps

1 contigs containing 78 sequences

1(100.00)% of these contigs contain snps

with a total of 14 snps

2 contigs containing 79 sequences

2(100.00)% of these contigs contain snps

with a total of 19 snps

1 contigs containing 82 sequences

1(100.00)% of these contigs contain snps

with a total of 7 snps

1 contigs containing 83 sequences

(0.00)% of these contigs contain snps

2 contigs containing 84 sequences

2(100.00)% of these contigs contain snps

with a total of 43 snps

1 contigs containing 85 sequences

1(100.00)% of these contigs contain snps

with a total of 16 snps

1 contigs containing 86 sequences

1(100.00)% of these contigs contain snps

with a total of 10 snps

2 contigs containing 87 sequences

2(100.00)% of these contigs contain snps

with a total of 20 snps

1 contigs containing 88 sequences

1(100.00)% of these contigs contain snps

with a total of 1 snps

1 contigs containing 89 sequences

1(100.00)% of these contigs contain snps

with a total of 4 snps

1 contigs containing 91 sequences

1(100.00)% of these contigs contain snps

with a total of 19 snps

1 contigs containing 93 sequences

1(100.00)% of these contigs contain snps

with a total of 4 snps

1 contigs containing 94 sequences

(0.00)% of these contigs contain snps

1 contigs containing 95 sequences

1(100.00)% of these contigs contain snps

with a total of 2 snps

1 contigs containing 96 sequences

1(100.00)% of these contigs contain snps

with a total of 19 snps

2 contigs containing 97 sequences

2(100.00)% of these contigs contain snps

with a total of 38 snps

1 contigs containing 98 sequences

1(100.00)% of these contigs contain snps

with a total of 3 snps

2 contigs containing 101 sequences

2(100.00)% of these contigs contain snps

with a total of 8 snps

1 contigs containing 103 sequences

1(100.00)% of these contigs contain snps

with a total of 12 snps

1 contigs containing 106 sequences

1(100.00)% of these contigs contain snps

with a total of 24 snps

1 contigs containing 107 sequences

1(100.00)% of these contigs contain snps

with a total of 6 snps

1 contigs containing 108 sequences

1(100.00)% of these contigs contain snps

with a total of 10 snps

2 contigs containing 110 sequences

2(100.00)% of these contigs contain snps

with a total of 46 snps

2 contigs containing 111 sequences

2(100.00)% of these contigs contain snps

with a total of 12 snps

3 contigs containing 112 sequences

3(100.00)% of these contigs contain snps

with a total of 43 snps

1 contigs containing 113 sequences

1(100.00)% of these contigs contain snps

with a total of 5 snps

1 contigs containing 114 sequences

1(100.00)% of these contigs contain snps

with a total of 2 snps

2 contigs containing 120 sequences

2(100.00)% of these contigs contain snps

with a total of 24 snps

1 contigs containing 123 sequences

1(100.00)% of these contigs contain snps

with a total of 16 snps

1 contigs containing 124 sequences

1(100.00)% of these contigs contain snps

with a total of 7 snps

1 contigs containing 126 sequences

1(100.00)% of these contigs contain snps

with a total of 24 snps

1 contigs containing 131 sequences

1(100.00)% of these contigs contain snps

with a total of 39 snps

1 contigs containing 132 sequences

1(100.00)% of these contigs contain snps

with a total of 26 snps

1 contigs containing 136 sequences

1(100.00)% of these contigs contain snps

with a total of 17 snps

1 contigs containing 137 sequences

1(100.00)% of these contigs contain snps

with a total of 21 snps

2 contigs containing 143 sequences

2(100.00)% of these contigs contain snps

with a total of 44 snps

2 contigs containing 144 sequences

2(100.00)% of these contigs contain snps

with a total of 60 snps

1 contigs containing 148 sequences

1(100.00)% of these contigs contain snps

with a total of 23 snps

1 contigs containing 149 sequences

1(100.00)% of these contigs contain snps

with a total of 29 snps

1 contigs containing 154 sequences

1(100.00)% of these contigs contain snps

with a total of 46 snps

1 contigs containing 156 sequences

1(100.00)% of these contigs contain snps

with a total of 1 snps

2 contigs containing 161 sequences

2(100.00)% of these contigs contain snps

with a total of 45 snps

1 contigs containing 170 sequences

1(100.00)% of these contigs contain snps

with a total of 18 snps

1 contigs containing 171 sequences

1(100.00)% of these contigs contain snps

with a total of 16 snps

1 contigs containing 179 sequences

1(100.00)% of these contigs contain snps

with a total of 16 snps

1 contigs containing 182 sequences

1(100.00)% of these contigs contain snps

with a total of 12 snps

1 contigs containing 190 sequences

1(100.00)% of these contigs contain snps

with a total of 22 snps

2 contigs containing 192 sequences

2(100.00)% of these contigs contain snps

with a total of 71 snps

1 contigs containing 198 sequences

1(100.00)% of these contigs contain snps

with a total of 24 snps

1 contigs containing 209 sequences

1(100.00)% of these contigs contain snps

with a total of 12 snps

1 contigs containing 211 sequences

1(100.00)% of these contigs contain snps

with a total of 31 snps

1 contigs containing 237 sequences

1(100.00)% of these contigs contain snps

with a total of 49 snps