PBC Bioinformatics

       
  SNPSever Home    BLAST    Submit File      Database Information    Help 
       
               
               

RESULTS SUMMARY
View contig list


  Total sequences analysed = 74038

  Sequences sorted into 9179 contigs and 0 singletons

  Total SNPs detected = 5852

  Total consensus size = 8454286 bp

  SNP frequency = 0.07/100 bp

  Smallest contig = 2 sequences

  Total transitions = 2637

  Total transversions = 1525

  Total indels = 1690

  3424 contigs containing 2 sequences

    (0.00)% of these contigs contain snps

  1512 contigs containing 3 sequences

    (0.00)% of these contigs contain snps

  907 contigs containing 4 sequences

    140(15.44)% of these contigs contain snps

    with a total of 599 snps

  655 contigs containing 5 sequences

    (0.00)% of these contigs contain snps

  443 contigs containing 6 sequences

    25(5.64)% of these contigs contain snps

    with a total of 75 snps

  350 contigs containing 7 sequences

    47(13.43)% of these contigs contain snps

    with a total of 155 snps

  214 contigs containing 8 sequences

    45(21.03)% of these contigs contain snps

    with a total of 229 snps

  182 contigs containing 9 sequences

    13(7.14)% of these contigs contain snps

    with a total of 63 snps

  170 contigs containing 10 sequences

    20(11.76)% of these contigs contain snps

    with a total of 50 snps

  119 contigs containing 11 sequences

    24(20.17)% of these contigs contain snps

    with a total of 151 snps

  126 contigs containing 12 sequences

    32(25.40)% of these contigs contain snps

    with a total of 177 snps

  92 contigs containing 13 sequences

    11(11.96)% of these contigs contain snps

    with a total of 43 snps

  80 contigs containing 14 sequences

    12(15.00)% of these contigs contain snps

    with a total of 67 snps

  65 contigs containing 15 sequences

    10(15.38)% of these contigs contain snps

    with a total of 27 snps

  59 contigs containing 16 sequences

    11(18.64)% of these contigs contain snps

    with a total of 71 snps

  67 contigs containing 17 sequences

    12(17.91)% of these contigs contain snps

    with a total of 60 snps

  51 contigs containing 18 sequences

    13(25.49)% of these contigs contain snps

    with a total of 51 snps

  55 contigs containing 19 sequences

    16(29.09)% of these contigs contain snps

    with a total of 96 snps

  41 contigs containing 20 sequences

    17(41.46)% of these contigs contain snps

    with a total of 80 snps

  31 contigs containing 21 sequences

    7(22.58)% of these contigs contain snps

    with a total of 27 snps

  34 contigs containing 22 sequences

    10(29.41)% of these contigs contain snps

    with a total of 61 snps

  28 contigs containing 23 sequences

    9(32.14)% of these contigs contain snps

    with a total of 42 snps

  22 contigs containing 24 sequences

    5(22.73)% of these contigs contain snps

    with a total of 28 snps

  18 contigs containing 25 sequences

    3(16.67)% of these contigs contain snps

    with a total of 14 snps

  21 contigs containing 26 sequences

    10(47.62)% of these contigs contain snps

    with a total of 64 snps

  23 contigs containing 27 sequences

    11(47.83)% of these contigs contain snps

    with a total of 65 snps

  19 contigs containing 28 sequences

    4(21.05)% of these contigs contain snps

    with a total of 11 snps

  10 contigs containing 29 sequences

    4(40.00)% of these contigs contain snps

    with a total of 23 snps

  19 contigs containing 30 sequences

    11(57.89)% of these contigs contain snps

    with a total of 37 snps

  17 contigs containing 31 sequences

    11(64.71)% of these contigs contain snps

    with a total of 103 snps

  16 contigs containing 32 sequences

    9(56.25)% of these contigs contain snps

    with a total of 66 snps

  8 contigs containing 33 sequences

    4(50.00)% of these contigs contain snps

    with a total of 33 snps

  14 contigs containing 34 sequences

    6(42.86)% of these contigs contain snps

    with a total of 46 snps

  10 contigs containing 35 sequences

    7(70.00)% of these contigs contain snps

    with a total of 37 snps

  11 contigs containing 36 sequences

    7(63.64)% of these contigs contain snps

    with a total of 52 snps

  10 contigs containing 37 sequences

    8(80.00)% of these contigs contain snps

    with a total of 43 snps

  10 contigs containing 38 sequences

    7(70.00)% of these contigs contain snps

    with a total of 38 snps

  8 contigs containing 39 sequences

    5(62.50)% of these contigs contain snps

    with a total of 25 snps

  9 contigs containing 40 sequences

    8(88.89)% of these contigs contain snps

    with a total of 53 snps

  11 contigs containing 41 sequences

    8(72.73)% of these contigs contain snps

    with a total of 82 snps

  10 contigs containing 42 sequences

    5(50.00)% of these contigs contain snps

    with a total of 46 snps

  9 contigs containing 43 sequences

    8(88.89)% of these contigs contain snps

    with a total of 44 snps

  8 contigs containing 44 sequences

    7(87.50)% of these contigs contain snps

    with a total of 58 snps

  4 contigs containing 45 sequences

    3(75.00)% of these contigs contain snps

    with a total of 15 snps

  7 contigs containing 46 sequences

    3(42.86)% of these contigs contain snps

    with a total of 45 snps

  3 contigs containing 47 sequences

    3(100.00)% of these contigs contain snps

    with a total of 38 snps

  8 contigs containing 48 sequences

    8(100.00)% of these contigs contain snps

    with a total of 65 snps

  2 contigs containing 50 sequences

    2(100.00)% of these contigs contain snps

    with a total of 13 snps

  6 contigs containing 51 sequences

    4(66.67)% of these contigs contain snps

    with a total of 52 snps

  7 contigs containing 52 sequences

    3(42.86)% of these contigs contain snps

    with a total of 21 snps

  4 contigs containing 53 sequences

    4(100.00)% of these contigs contain snps

    with a total of 25 snps

  1 contigs containing 54 sequences

    1(100.00)% of these contigs contain snps

    with a total of 12 snps

  3 contigs containing 55 sequences

    3(100.00)% of these contigs contain snps

    with a total of 11 snps

  3 contigs containing 56 sequences

    2(66.67)% of these contigs contain snps

    with a total of 23 snps

  7 contigs containing 57 sequences

    5(71.43)% of these contigs contain snps

    with a total of 19 snps

  4 contigs containing 58 sequences

    2(50.00)% of these contigs contain snps

    with a total of 9 snps

  3 contigs containing 59 sequences

    2(66.67)% of these contigs contain snps

    with a total of 21 snps

  4 contigs containing 60 sequences

    4(100.00)% of these contigs contain snps

    with a total of 48 snps

  5 contigs containing 61 sequences

    4(80.00)% of these contigs contain snps

    with a total of 21 snps

  6 contigs containing 62 sequences

    5(83.33)% of these contigs contain snps

    with a total of 26 snps

  4 contigs containing 63 sequences

    2(50.00)% of these contigs contain snps

    with a total of 19 snps

  3 contigs containing 64 sequences

    3(100.00)% of these contigs contain snps

    with a total of 32 snps

  3 contigs containing 65 sequences

    3(100.00)% of these contigs contain snps

    with a total of 39 snps

  3 contigs containing 66 sequences

    3(100.00)% of these contigs contain snps

    with a total of 40 snps

  3 contigs containing 67 sequences

    3(100.00)% of these contigs contain snps

    with a total of 26 snps

  2 contigs containing 68 sequences

    2(100.00)% of these contigs contain snps

    with a total of 45 snps

  2 contigs containing 69 sequences

    1(50.00)% of these contigs contain snps

    with a total of 19 snps

  2 contigs containing 70 sequences

    2(100.00)% of these contigs contain snps

    with a total of 28 snps

  1 contigs containing 71 sequences

    1(100.00)% of these contigs contain snps

    with a total of 10 snps

  2 contigs containing 72 sequences

    2(100.00)% of these contigs contain snps

    with a total of 7 snps

  5 contigs containing 73 sequences

    4(80.00)% of these contigs contain snps

    with a total of 66 snps

  2 contigs containing 74 sequences

    2(100.00)% of these contigs contain snps

    with a total of 3 snps

  1 contigs containing 75 sequences

    1(100.00)% of these contigs contain snps

    with a total of 7 snps

  1 contigs containing 76 sequences

    1(100.00)% of these contigs contain snps

    with a total of 1 snps

  1 contigs containing 78 sequences

    1(100.00)% of these contigs contain snps

    with a total of 14 snps

  2 contigs containing 79 sequences

    2(100.00)% of these contigs contain snps

    with a total of 19 snps

  1 contigs containing 82 sequences

    1(100.00)% of these contigs contain snps

    with a total of 7 snps

  1 contigs containing 83 sequences

    (0.00)% of these contigs contain snps

  2 contigs containing 84 sequences

    2(100.00)% of these contigs contain snps

    with a total of 43 snps

  1 contigs containing 85 sequences

    1(100.00)% of these contigs contain snps

    with a total of 16 snps

  1 contigs containing 86 sequences

    1(100.00)% of these contigs contain snps

    with a total of 10 snps

  2 contigs containing 87 sequences

    2(100.00)% of these contigs contain snps

    with a total of 20 snps

  1 contigs containing 88 sequences

    1(100.00)% of these contigs contain snps

    with a total of 1 snps

  1 contigs containing 89 sequences

    1(100.00)% of these contigs contain snps

    with a total of 4 snps

  1 contigs containing 91 sequences

    1(100.00)% of these contigs contain snps

    with a total of 19 snps

  1 contigs containing 93 sequences

    1(100.00)% of these contigs contain snps

    with a total of 4 snps

  1 contigs containing 94 sequences

    (0.00)% of these contigs contain snps

  1 contigs containing 95 sequences

    1(100.00)% of these contigs contain snps

    with a total of 2 snps

  1 contigs containing 96 sequences

    1(100.00)% of these contigs contain snps

    with a total of 19 snps

  2 contigs containing 97 sequences

    2(100.00)% of these contigs contain snps

    with a total of 38 snps

  1 contigs containing 98 sequences

    1(100.00)% of these contigs contain snps

    with a total of 3 snps

  2 contigs containing 101 sequences

    2(100.00)% of these contigs contain snps

    with a total of 8 snps

  1 contigs containing 103 sequences

    1(100.00)% of these contigs contain snps

    with a total of 12 snps

  1 contigs containing 106 sequences

    1(100.00)% of these contigs contain snps

    with a total of 24 snps

  1 contigs containing 107 sequences

    1(100.00)% of these contigs contain snps

    with a total of 6 snps

  1 contigs containing 108 sequences

    1(100.00)% of these contigs contain snps

    with a total of 10 snps

  2 contigs containing 110 sequences

    2(100.00)% of these contigs contain snps

    with a total of 46 snps

  2 contigs containing 111 sequences

    2(100.00)% of these contigs contain snps

    with a total of 12 snps

  3 contigs containing 112 sequences

    3(100.00)% of these contigs contain snps

    with a total of 43 snps

  1 contigs containing 113 sequences

    1(100.00)% of these contigs contain snps

    with a total of 5 snps

  1 contigs containing 114 sequences

    1(100.00)% of these contigs contain snps

    with a total of 2 snps

  2 contigs containing 120 sequences

    2(100.00)% of these contigs contain snps

    with a total of 24 snps

  1 contigs containing 123 sequences

    1(100.00)% of these contigs contain snps

    with a total of 16 snps

  1 contigs containing 124 sequences

    1(100.00)% of these contigs contain snps

    with a total of 7 snps

  1 contigs containing 126 sequences

    1(100.00)% of these contigs contain snps

    with a total of 24 snps

  1 contigs containing 131 sequences

    1(100.00)% of these contigs contain snps

    with a total of 39 snps

  1 contigs containing 132 sequences

    1(100.00)% of these contigs contain snps

    with a total of 26 snps

  1 contigs containing 136 sequences

    1(100.00)% of these contigs contain snps

    with a total of 17 snps

  1 contigs containing 137 sequences

    1(100.00)% of these contigs contain snps

    with a total of 21 snps

  2 contigs containing 143 sequences

    2(100.00)% of these contigs contain snps

    with a total of 44 snps

  2 contigs containing 144 sequences

    2(100.00)% of these contigs contain snps

    with a total of 60 snps

  1 contigs containing 148 sequences

    1(100.00)% of these contigs contain snps

    with a total of 23 snps

  1 contigs containing 149 sequences

    1(100.00)% of these contigs contain snps

    with a total of 29 snps

  1 contigs containing 154 sequences

    1(100.00)% of these contigs contain snps

    with a total of 46 snps

  1 contigs containing 156 sequences

    1(100.00)% of these contigs contain snps

    with a total of 1 snps

  2 contigs containing 161 sequences

    2(100.00)% of these contigs contain snps

    with a total of 45 snps

  1 contigs containing 170 sequences

    1(100.00)% of these contigs contain snps

    with a total of 18 snps

  1 contigs containing 171 sequences

    1(100.00)% of these contigs contain snps

    with a total of 16 snps

  1 contigs containing 179 sequences

    1(100.00)% of these contigs contain snps

    with a total of 16 snps

  1 contigs containing 182 sequences

    1(100.00)% of these contigs contain snps

    with a total of 12 snps

  1 contigs containing 190 sequences

    1(100.00)% of these contigs contain snps

    with a total of 22 snps

  2 contigs containing 192 sequences

    2(100.00)% of these contigs contain snps

    with a total of 71 snps

  1 contigs containing 198 sequences

    1(100.00)% of these contigs contain snps

    with a total of 24 snps

  1 contigs containing 209 sequences

    1(100.00)% of these contigs contain snps

    with a total of 12 snps

  1 contigs containing 211 sequences

    1(100.00)% of these contigs contain snps

    with a total of 31 snps

  1 contigs containing 237 sequences

    1(100.00)% of these contigs contain snps

    with a total of 49 snps

  1 contigs containing 257 sequences

    1(100.00)% of these contigs contain snps

    with a total of 20 snps

  2 contigs containing 277 sequences

    2(100.00)% of these contigs contain snps

    with a total of 39 snps

  1 contigs containing 324 sequences

    1(100.00)% of these contigs contain snps

    with a total of 34 snps

  1 contigs containing 354 sequences

    1(100.00)% of these contigs contain snps

    with a total of 36 snps

  1 contigs containing 358 sequences

    1(100.00)% of these contigs contain snps

    with a total of 7 snps

  1 contigs containing 387 sequences

    1(100.00)% of these contigs contain snps

    with a total of 70 snps

  1 contigs containing 404 sequences

    1(100.00)% of these contigs contain snps

    with a total of 41 snps

  1 contigs containing 417 sequences

    1(100.00)% of these contigs contain snps

    with a total of 38 snps

  1 contigs containing 589 sequences

    1(100.00)% of these contigs contain snps

    with a total of 63 snps

  1 contigs containing 678 sequences

    1(100.00)% of these contigs contain snps

    with a total of 70 snps

  1 contigs containing 997 sequences

    1(100.00)% of these contigs contain snps

    with a total of 75 snps

  1 contigs containing 1344 sequences

    1(100.00)% of these contigs contain snps

    with a total of 153 snps

  1 contigs containing 2097 sequences

    1(100.00)% of these contigs contain snps

    with a total of 228 snps


        Credits & Disclaimer        
               
               
(C) Plant Biotechnology Centre Australia, DPI
Comments/suggestions to Dave Edwards
Dave.Edwards.vic.gov.au
Best viewed at 800x600+