PBC Bioinformatics

       
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RESULTS SUMMARY
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  Total sequences analysed = 3031

  Sequences sorted into 705 contigs and 0 singletons

  Total SNPs detected = 316

  Total consensus size = 462989 bp

  SNP frequency = 0.07/100 bp

  Smallest contig = 2 sequences

  Total transitions = 143

  Total transversions = 85

  Total indels = 88

  397 contigs containing 2 sequences

    (0.00)% of these contigs contain snps

  134 contigs containing 3 sequences

    (0.00)% of these contigs contain snps

  56 contigs containing 4 sequences

    26(46.43)% of these contigs contain snps

    with a total of 67 snps

  38 contigs containing 5 sequences

    (0.00)% of these contigs contain snps

  15 contigs containing 6 sequences

    2(13.33)% of these contigs contain snps

    with a total of 4 snps

  10 contigs containing 7 sequences

    3(30.00)% of these contigs contain snps

    with a total of 12 snps

  5 contigs containing 8 sequences

    2(40.00)% of these contigs contain snps

    with a total of 2 snps

  4 contigs containing 9 sequences

    2(50.00)% of these contigs contain snps

    with a total of 11 snps

  11 contigs containing 10 sequences

    5(45.45)% of these contigs contain snps

    with a total of 14 snps

  10 contigs containing 11 sequences

    1(10.00)% of these contigs contain snps

    with a total of 10 snps

  4 contigs containing 12 sequences

    2(50.00)% of these contigs contain snps

    with a total of 9 snps

  3 contigs containing 13 sequences

    (0.00)% of these contigs contain snps

  1 contigs containing 14 sequences

    1(100.00)% of these contigs contain snps

    with a total of 11 snps

  2 contigs containing 15 sequences

    (0.00)% of these contigs contain snps

  1 contigs containing 17 sequences

    1(100.00)% of these contigs contain snps

    with a total of 8 snps

  1 contigs containing 20 sequences

    1(100.00)% of these contigs contain snps

    with a total of 2 snps

  1 contigs containing 21 sequences

    1(100.00)% of these contigs contain snps

    with a total of 3 snps

  1 contigs containing 24 sequences

    1(100.00)% of these contigs contain snps

    with a total of 1 snps

  1 contigs containing 26 sequences

    1(100.00)% of these contigs contain snps

    with a total of 8 snps

  3 contigs containing 27 sequences

    3(100.00)% of these contigs contain snps

    with a total of 15 snps

  1 contigs containing 30 sequences

    1(100.00)% of these contigs contain snps

    with a total of 4 snps

  1 contigs containing 44 sequences

    1(100.00)% of these contigs contain snps

    with a total of 2 snps

  2 contigs containing 54 sequences

    2(100.00)% of these contigs contain snps

    with a total of 37 snps

  1 contigs containing 104 sequences

    1(100.00)% of these contigs contain snps

    with a total of 35 snps

  1 contigs containing 121 sequences

    1(100.00)% of these contigs contain snps

    with a total of 25 snps

  1 contigs containing 238 sequences

    1(100.00)% of these contigs contain snps

    with a total of 36 snps


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(C) Plant Biotechnology Centre Australia, DPI
Comments/suggestions to Dave Edwards
Dave.Edwards.vic.gov.au
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