PBC Bioinformatics

       
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RESULTS SUMMARY
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  Total sequences analysed = 5471

  Sequences sorted into 1228 contigs and 0 singletons

  Total SNPs detected = 626

  Total consensus size = 814879 bp

  SNP frequency = 0.08/100 bp

  Smallest contig = 2 sequences

  Total transitions = 319

  Total transversions = 186

  Total indels = 121

  630 contigs containing 2 sequences

    (0.00)% of these contigs contain snps

  223 contigs containing 3 sequences

    (0.00)% of these contigs contain snps

  120 contigs containing 4 sequences

    40(33.33)% of these contigs contain snps

    with a total of 116 snps

  62 contigs containing 5 sequences

    (0.00)% of these contigs contain snps

  44 contigs containing 6 sequences

    12(27.27)% of these contigs contain snps

    with a total of 22 snps

  27 contigs containing 7 sequences

    16(59.26)% of these contigs contain snps

    with a total of 32 snps

  26 contigs containing 8 sequences

    12(46.15)% of these contigs contain snps

    with a total of 41 snps

  16 contigs containing 9 sequences

    8(50.00)% of these contigs contain snps

    with a total of 21 snps

  13 contigs containing 10 sequences

    6(46.15)% of these contigs contain snps

    with a total of 16 snps

  16 contigs containing 11 sequences

    3(18.75)% of these contigs contain snps

    with a total of 8 snps

  8 contigs containing 12 sequences

    4(50.00)% of these contigs contain snps

    with a total of 19 snps

  5 contigs containing 13 sequences

    2(40.00)% of these contigs contain snps

    with a total of 7 snps

  4 contigs containing 14 sequences

    4(100.00)% of these contigs contain snps

    with a total of 15 snps

  6 contigs containing 15 sequences

    (0.00)% of these contigs contain snps

  2 contigs containing 16 sequences

    2(100.00)% of these contigs contain snps

    with a total of 2 snps

  3 contigs containing 17 sequences

    2(66.67)% of these contigs contain snps

    with a total of 12 snps

  1 contigs containing 18 sequences

    1(100.00)% of these contigs contain snps

    with a total of 6 snps

  2 contigs containing 19 sequences

    2(100.00)% of these contigs contain snps

    with a total of 14 snps

  1 contigs containing 20 sequences

    1(100.00)% of these contigs contain snps

    with a total of 5 snps

  1 contigs containing 21 sequences

    (0.00)% of these contigs contain snps

  1 contigs containing 23 sequences

    1(100.00)% of these contigs contain snps

    with a total of 1 snps

  1 contigs containing 25 sequences

    1(100.00)% of these contigs contain snps

    with a total of 2 snps

  3 contigs containing 27 sequences

    3(100.00)% of these contigs contain snps

    with a total of 21 snps

  3 contigs containing 30 sequences

    3(100.00)% of these contigs contain snps

    with a total of 7 snps

  1 contigs containing 33 sequences

    1(100.00)% of these contigs contain snps

    with a total of 9 snps

  1 contigs containing 48 sequences

    1(100.00)% of these contigs contain snps

    with a total of 37 snps

  1 contigs containing 52 sequences

    1(100.00)% of these contigs contain snps

    with a total of 2 snps

  2 contigs containing 54 sequences

    2(100.00)% of these contigs contain snps

    with a total of 30 snps

  1 contigs containing 56 sequences

    1(100.00)% of these contigs contain snps

    with a total of 31 snps

  1 contigs containing 104 sequences

    1(100.00)% of these contigs contain snps

    with a total of 35 snps

  1 contigs containing 118 sequences

    1(100.00)% of these contigs contain snps

    with a total of 38 snps

  1 contigs containing 138 sequences

    1(100.00)% of these contigs contain snps

    with a total of 38 snps

  1 contigs containing 278 sequences

    1(100.00)% of these contigs contain snps

    with a total of 39 snps


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(C) Plant Biotechnology Centre Australia, DPI
Comments/suggestions to Dave Edwards
Dave.Edwards.vic.gov.au
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