MDP0000268417, MDP0000268417 (mRNA) Malus spp. (apple)

Transcript Overview


Name	MDP0000268417
Unique Name	MDP0000268417
Type	mRNA
Organism	Malus x domestica (Apple)
Sequence length	2140

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
chr11	chromosome	chr11:29289579..29291718 -	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a
MDC001733.221	contig	MDC001733.221:3696..5835 -	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation	2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA	2012-07-23

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000268417_exon_1	MDP0000268417_exon_1	Malus x domestica	CDS
MDP0000268417_exon_2	MDP0000268417_exon_2	Malus x domestica	CDS
MDP0000268417_exon_3	MDP0000268417_exon_3	Malus x domestica	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000268417	MDP0000268417	Malus x domestica	polypeptide

InterPro

Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain, cyclin-like	PFAM	PF00646	F-box	coord: 12..50 score: 1.2
IPR001810	F-box domain, cyclin-like	SMART	SM00256	A Receptor for Ubiquitination Targets	coord: 16..55 score: 0
IPR001810	F-box domain, cyclin-like	PROFILE	PS50181	FBOX	coord: 10..60 score: 10
IPR001810	F-box domain, cyclin-like	SUPERFAMILY	81383	F-box domain	coord: 11..49 score: 8.3
IPR006566	FBD	PFAM	PF08387	FBD	coord: 392..439 score: 1.1
None	No IPR available	COIL	coil	coiled-coil	coord: 353..374 score
None	No IPR available	GENE3D	3.80.10.10	no description	coord: 129..369 score: 1.2
None	No IPR available	SEG	seg	seg	coord: 369..384 score: NAcoord: 442..451 score
None	No IPR available	SUPERFAMILY	52047	RNI-like	coord: 153..370 score: 1.1
None	No IPR available	SEG	seg	seg	coord: 13..24 score

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr11:29289579..29291718-
mRNA from alignment at MDC001733.221:3696..5835-
coding sequence from alignment at MDC001733.221:3696..5835-

mRNA sequence

>MDP0000268417 ID=MDP0000268417; Name=MDP0000268417; organism=Malus x domestica; type=mRNA; length=2140bp
ATGGGTTCAAAGGTTCAAGCCATGGTTACAGATAGGATTAGTGAATTGCC
AAAGGAACTTCTTCATGACATACTCTCCCTTCTTCCAGCAAAATACGTTG
TGAGGACCAGCGTTTTGTCTACAAAATGGGAGAACATATGGGCTTCTGTC
CCCAATCTAGACTGCGAATTCGAAACTTTACCTATAGTATGGAGAGAATC
TGTGTCCCTCCCTGATGGTATCACATGGGAAGACGAACATGTGTCTGACC
ATGTCGATTTTATGACATTTGTTGATCGTGTACTTTACTTTCGCTGCGAT
TCAGTTATTAAAAAATTCCGTCTTCATTGCTACTGTCGTGTTGAGGATGC
CCCTCGTATTGATGGTTGGATTCGCGCTGCCATTAGGCGTAATGTCGTTG
AGCTTGATCTTTGTGTTCAAGCACATCGTGATGATTATCAAGAGGACCCG
CCTTTGGAGTTTCCTCGACGTGTATTCATGTGCAAAACACTGGAGGTTTT
GAAGGTGAAGTCAGATTTTATTACCTATGCTCCTCCTACATCAGGCTGTT
TCCCAAGCCTCAAGGTCCTTGATATCAGAGTTGATAATCCTGAAGCCGAC
TCAATGGAAAAGTTTTTTTCGTGCTGCCCTGTACTTGAAGATTTATCTCT
ATTTGCATGTGTCACAGATGGTAGGCTTTGGAATTTTAAGGTCTCTGCTC
CCAAACTGAAGAGATTAAAAATGACCTTCTTAACTGATCTCTATGATGAT
AATAATCCAAAGTACTATATTTCTATTAATGCTCCAGAGCTTGAACAGCT
TGACATTAAGCAGGACTTTTTGTCAAATTATTCATTTGTGAATCTAAAAT
CCCCAGTCAAAGGCAGTGTCGATTTCTATTGCCATCTTGGGAAACTCCAG
CGTCACTTCTTTGAACGAGCAACTGCGCTTCTGAAGACATTTGCCAACGT
TAAATATCTGTCTATTTCAGCTCATTTTGTGGCGGTTAGTATATTCCTCA
ACTCGTTTATTTTACACTTTTTTTTTATTGATAGGAAAACAGGAAGGAGG
GCGGGGGGTTCTTTAAGAGAAGAAGGGATGATATGTTTTCCCTTCATTTA
TAAAGAGGAAGACKGGAGCAGTCAGGCATGCATATAAACCCTTCTTTTAT
ATCCTTTCAAAGTTGGACAGATTGAAGAAATCAAATAGTATTTTGGTTTT
GGGTTAAGAAGGAAATAATAAAGAAACAGCAATGTAGTTGGATATTAAAA
TTCTCATCTTGTTTCTACGTTTTATATTATTTTCTTTTTCAGAATTAGAT
CTTAATTACCTTTTATGTACGAAACAAATGCGGAAAAGTTTGTGTGCACA
CATTTTCTTTCTCTCCTTAATTACATGAGGCAAATACACATCCCTGGCAT
GCCGCATTTTCATTCTTTCTTTGTACCACAAGCTAGTGTTTGTAACTGAA
ACCTGTATTACGTTTTGACAACTTATGCTTTGAAACAGCATATGCATTAG
TAAATGCTTCATTTATGCATGGTTTATGTTTGATCAATATATTATGTTTC
AAAAGATTTATTGTCTGCCTGTATTTTGATAGTCCGAGCGAATTGATGGA
GTGATTTATCTGCATGATGAGGATGTGTTTGATCAATTTTTTGATATTTC
GTGAAACAGGGTTGTCTGCCTGCTTTCAATCATTTGACCGAATTGAAGTT
GCTTGTTTTTGATTGCTATCATTGGGATTTGCTAACACAGTTGCTCAAGA
AATCAAATAATTTGGAATCTCTTGTCATCGAATATGAAGAAGTAAGATGT
ATTTTCGCTCATGCTAAGTCATAACAACTTGATGCTCTCTAGTATTCTCA
TCATTCGTACTTTTCAGGATGAGGAATGCGTTGAGGATCATGAGGAACTT
GAAAGGTACTCAAAAGAGGATCTATGGAGTACACCAGAGTCTGTGCCTAT
TTGTGTGACTGGACACCTCAAGACTATCACTATAAGGGGACTCGAGGGAT
ACCCGCATGTGAAGAAAGTGGCAAAGTGTTTGTTAAACAGCGGTAAAGTT
TTGACTAAGATGACTGTTGACAATGAAGAGTTGTACAAAGAACTAMTGCT
TGAAGGGGGCTCTAGGACTTGTCTGGTTGAAGTTGTCTGA

protein sequence of MDP0000268417

>MDP0000268417 ID=MDP0000268417; Name=MDP0000268417; organism=Malus x domestica; type=polypeptide; length=462bp
MGSKVQAMVTDRISELPKELLHDILSLLPAKYVVRTSVLSTKWENIWASV
PNLDCEFETLPIVWRESVSLPDGITWEDEHVSDHVDFMTFVDRVLYFRCD
SVIKKFRLHCYCRVEDAPRIDGWIRAAIRRNVVELDLCVQAHRDDYQEDP
PLEFPRRVFMCKTLEVLKVKSDFITYAPPTSGCFPSLKVLDIRVDNPEAD
SMEKFFSCCPVLEDLSLFACVTDGRLWNFKVSAPKLKRLKMTFLTDLYDD
NNPKYYISINAPELEQLDIKQDFLSNYSFVNLKSPVKGSVDFYCHLGKLQ
RHFFERATALLKTFANVKYLSISAHFVAGCLPAFNHLTELKLLVFDCYHW
DLLTQLLKKSNNLESLVIEYEEDEECVEDHEELERYSKEDLWSTPESVPI
CVTGHLKTITIRGLEGYPHVKKVAKCLLNSGKVLTKMTVDNEELYKELXL
EGGSRTCLVEVV

mRNA from alignment at chr11:29289579..29291718-

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000268417 ID=MDP0000268417; Name=MDP0000268417; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr11:29289579..29291718- (Malus x domestica

mRNA from alignment at MDC001733.221:3696..5835-

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000268417 ID=MDP0000268417; Name=MDP0000268417; organism=Malus x domestica; type=mRNA; length=2140bp; location=Sequence derived from: MDC001733.221:3696..5835- (Malus x domestica
ATGGGTTCAAAGGTTCAAGCCATGGTTACAGATAGGATTAGTGAATTGCC
AAAGGAACTTCTTCATGACATACTCTCCCTTCTTCCAGCAAAATACGTTG
TGAGGACCAGCGTTTTGTCTACAAAATGGGAGAACATATGGGCTTCTGTC
CCCAATCTAGACTGCGAATTCGAAACTTTACCTATAGTATGGAGAGAATC
TGTGTCCCTCCCTGATGGTATCACATGGGAAGACGAACATGTGTCTGACC
ATGTCGATTTTATGACATTTGTTGATCGTGTACTTTACTTTCGCTGCGAT
TCAGTTATTAAAAAATTCCGTCTTCATTGCTACTGTCGTGTTGAGGATGC
CCCTCGTATTGATGGTTGGATTCGCGCTGCCATTAGGCGTAATGTCGTTG
AGCTTGATCTTTGTGTTCAAGCACATCGTGATGATTATCAAGAGGACCCG
CCTTTGGAGTTTCCTCGACGTGTATTCATGTGCAAAACACTGGAGGTTTT
GAAGGTGAAGTCAGATTTTATTACCTATGCTCCTCCTACATCAGGCTGTT
TCCCAAGCCTCAAGGTCCTTGATATCAGAGTTGATAATCCTGAAGCCGAC
TCAATGGAAAAGTTTTTTTCGTGCTGCCCTGTACTTGAAGATTTATCTCT
ATTTGCATGTGTCACAGATGGTAGGCTTTGGAATTTTAAGGTCTCTGCTC
CCAAACTGAAGAGATTAAAAATGACCTTCTTAACTGATCTCTATGATGAT
AATAATCCAAAGTACTATATTTCTATTAATGCTCCAGAGCTTGAACAGCT
TGACATTAAGCAGGACTTTTTGTCAAATTATTCATTTGTGAATCTAAAAT
CCCCAGTCAAAGGCAGTGTCGATTTCTATTGCCATCTTGGGAAACTCCAG
CGTCACTTCTTTGAACGAGCAACTGCGCTTCTGAAGACATTTGCCAACGT
TAAATATCTGTCTATTTCAGCTCATTTTGTGGCGGTTAGTATATTCCTCA
ACTCGTTTATTTTACACTTTTTTTTTATTGATAGGAAAACAGGAAGGAGG
GCGGGGGGTTCTTTAAGAGAAGAAGGGATGATATGTTTTCCCTTCATTTA
TAAAGAGGAAGACKGGAGCAGTCAGGCATGCATATAAACCCTTCTTTTAT
ATCCTTTCAAAGTTGGACAGATTGAAGAAATCAAATAGTATTTTGGTTTT
GGGTTAAGAAGGAAATAATAAAGAAACAGCAATGTAGTTGGATATTAAAA
TTCTCATCTTGTTTCTACGTTTTATATTATTTTCTTTTTCAGAATTAGAT
CTTAATTACCTTTTATGTACGAAACAAATGCGGAAAAGTTTGTGTGCACA
CATTTTCTTTCTCTCCTTAATTACATGAGGCAAATACACATCCCTGGCAT
GCCGCATTTTCATTCTTTCTTTGTACCACAAGCTAGTGTTTGTAACTGAA
ACCTGTATTACGTTTTGACAACTTATGCTTTGAAACAGCATATGCATTAG
TAAATGCTTCATTTATGCATGGTTTATGTTTGATCAATATATTATGTTTC
AAAAGATTTATTGTCTGCCTGTATTTTGATAGTCCGAGCGAATTGATGGA
GTGATTTATCTGCATGATGAGGATGTGTTTGATCAATTTTTTGATATTTC
GTGAAACAGGGTTGTCTGCCTGCTTTCAATCATTTGACCGAATTGAAGTT
GCTTGTTTTTGATTGCTATCATTGGGATTTGCTAACACAGTTGCTCAAGA
AATCAAATAATTTGGAATCTCTTGTCATCGAATATGAAGAAGTAAGATGT
ATTTTCGCTCATGCTAAGTCATAACAACTTGATGCTCTCTAGTATTCTCA
TCATTCGTACTTTTCAGGATGAGGAATGCGTTGAGGATCATGAGGAACTT
GAAAGGTACTCAAAAGAGGATCTATGGAGTACACCAGAGTCTGTGCCTAT
TTGTGTGACTGGACACCTCAAGACTATCACTATAAGGGGACTCGAGGGAT
ACCCGCATGTGAAGAAAGTGGCAAAGTGTTTGTTAAACAGCGGTAAAGTT
TTGACTAAGATGACTGTTGACAATGAAGAGTTGTACAAAGAACTAMTGCT
TGAAGGGGGCTCTAGGACTTGTCTGGTTGAAGTTGTCTGA

Coding sequence (CDS) from alignment at MDC001733.221:3696..5835-

>MDP0000268417 ID=MDP0000268417; Name=MDP0000268417; organism=Malus x domestica; type=CDS; length=1389bp; location=Sequence derived from: MDC001733.221:3696..5835- (Malus x domestica
ATGGGTTCAAAGGTTCAAGCCATGGTTACAGATAGGATTAGTGAATTGCC
AAAGGAACTTCTTCATGACATACTCTCCCTTCTTCCAGCAAAATACGTTG
TGAGGACCAGCGTTTTGTCTACAAAATGGGAGAACATATGGGCTTCTGTC
CCCAATCTAGACTGCGAATTCGAAACTTTACCTATAGTATGGAGAGAATC
TGTGTCCCTCCCTGATGGTATCACATGGGAAGACGAACATGTGTCTGACC
ATGTCGATTTTATGACATTTGTTGATCGTGTACTTTACTTTCGCTGCGAT
TCAGTTATTAAAAAATTCCGTCTTCATTGCTACTGTCGTGTTGAGGATGC
CCCTCGTATTGATGGTTGGATTCGCGCTGCCATTAGGCGTAATGTCGTTG
AGCTTGATCTTTGTGTTCAAGCACATCGTGATGATTATCAAGAGGACCCG
CCTTTGGAGTTTCCTCGACGTGTATTCATGTGCAAAACACTGGAGGTTTT
GAAGGTGAAGTCAGATTTTATTACCTATGCTCCTCCTACATCAGGCTGTT
TCCCAAGCCTCAAGGTCCTTGATATCAGAGTTGATAATCCTGAAGCCGAC
TCAATGGAAAAGTTTTTTTCGTGCTGCCCTGTACTTGAAGATTTATCTCT
ATTTGCATGTGTCACAGATGGTAGGCTTTGGAATTTTAAGGTCTCTGCTC
CCAAACTGAAGAGATTAAAAATGACCTTCTTAACTGATCTCTATGATGAT
AATAATCCAAAGTACTATATTTCTATTAATGCTCCAGAGCTTGAACAGCT
TGACATTAAGCAGGACTTTTTGTCAAATTATTCATTTGTGAATCTAAAAT
CCCCAGTCAAAGGCAGTGTCGATTTCTATTGCCATCTTGGGAAACTCCAG
CGTCACTTCTTTGAACGAGCAACTGCGCTTCTGAAGACATTTGCCAACGT
TAAATATCTGTCTATTTCAGCTCATTTTGTGGCGGGTTGTCTGCCTGCTT
TCAATCATTTGACCGAATTGAAGTTGCTTGTTTTTGATTGCTATCATTGG
GATTTGCTAACACAGTTGCTCAAGAAATCAAATAATTTGGAATCTCTTGT
CATCGAATATGAAGAAGATGAGGAATGCGTTGAGGATCATGAGGAACTTG
AAAGGTACTCAAAAGAGGATCTATGGAGTACACCAGAGTCTGTGCCTATT
TGTGTGACTGGACACCTCAAGACTATCACTATAAGGGGACTCGAGGGATA
CCCGCATGTGAAGAAAGTGGCAAAGTGTTTGTTAAACAGCGGTAAAGTTT
TGACTAAGATGACTGTTGACAATGAAGAGTTGTACAAAGAACTAMTGCTT
GAAGGGGGCTCTAGGACTTGTCTGGTTGAAGTTGTCTGA

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001810	F-box_dom
IPR006566	FBD

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding