MDP0000293302, MDP0000293302 (mRNA) Malus spp. (apple)

Transcript Overview
NameMDP0000293302
Unique NameMDP0000293302
TypemRNA
OrganismMalus x domestica (Apple)
Sequence length1294
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA2012-07-23
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
MDP0000293302_exon_1MDP0000293302_exon_1Malus x domesticaCDS
MDP0000293302_exon_2MDP0000293302_exon_2Malus x domesticaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
MDP0000293302MDP0000293302Malus x domesticapolypeptide


InterPro
Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 74..119
score: 1.9e-11coord: 141..209
score: 2.2
IPR000504RNA recognition motif domainSMARTSM00360RNA recognition motifcoord: 73..139
score: 1.6e-06coord: 140..212
score: 1.4
IPR000504RNA recognition motif domainPROFILEPS50102RRMcoord: 72..119
score: 12.475coord: 139..219
score: 12
IPR012677Nucleotide-binding, alpha-beta plaitGENE3D3.30.70.330no descriptioncoord: 69..119
score: 3.1e-15coord: 135..231
score: 3.8
NoneNo IPR availablePANTHERPTHR24011FAMILY NOT NAMEDcoord: 6..404
score: 2.1
NoneNo IPR availablePANTHERPTHR24011:SF217SUBFAMILY NOT NAMEDcoord: 6..404
score: 2.1
NoneNo IPR availableSEGsegsegcoord: 126..137
score: NAcoord: 216..235
score: NAcoord: 246..286
score: NAcoord: 294..344
score: NAcoord: 346..362
score
NoneNo IPR availableSUPERFAMILY54928RNA-binding domain, RBDcoord: 132..241
score: 4.6e-18coord: 62..119
score: 7.2
NoneNo IPR availableSEGsegsegcoord: 20..28
score: NAcoord: 34..97
score
NoneNo IPR availableSEGsegsegcoord: 13..32
score
NoneNo IPR availableSEGsegsegcoord: 1..27
score
NoneNo IPR availableSEGsegsegcoord: 39..70
score: NAcoord: 73..105
score: NAcoord: 124..130
score
NoneNo IPR availableSEGsegsegcoord: 8..35
score
NoneNo IPR availableSEGsegsegcoord: 10..26
score: NAcoord: 70..75
score
NoneNo IPR availableSEGsegsegcoord: 73..88
score: NAcoord: 90..99
score: NAcoord: 100..121
score: NAcoord: 142..150
score
NoneNo IPR availableSEGsegsegcoord: 68..88
score: NAcoord: 95..110
score: NAcoord: 210..216
score
NoneNo IPR availableSEGsegsegcoord: 24..50
score

Sequences
The following sequences are available for this feature:

mRNA sequence

>MDP0000293302 ID=MDP0000293302; Name=MDP0000293302; organism=Malus x domestica; type=mRNA; length=1294bp
ATGGACTCAACCAAGAAGCGAAAGCTGGACGAGAACGGCGTCGTTCTGGA
CACGGATCCCTCCTCCGCCCCCAAGCTCTCCCCCGAAGACGCTCGCAGGC
TCATCGAGCGATTCACCCCCGATCAACTCCTCGACATTCTCCAAGACGCC
CTCTCCCGCCACGTCGACGTTCTCGACGCCGTCCGYTCCATCGCCGATCC
CGACGCCTCCCAGCGCAAGCTCTTCATCCGCGGCCTCGGCTGGGACACCA
CCACCGAGGGCCTCCGATCCCTCTTCTCCGCCTACGGCGAGCTGGAGGAG
GCTATCGTTATCCTCGACAAAACCACCGGAAAATCCAAGGGTTACGGGTT
CGTCACGTTCCGCCACGTTGACAGTGCTCTCATGGCCCTGAAAGAACCGA
GCAAGAAGATCGACGGCCGCATGACCGTCACGCAGCTCGCCTCCGCGGGG
AATTCGAACTCCAACRCSGMCCCAACAACGTCCTACGACGTTGCGGAAGA
TTTATGTGGCCAATGTTCCCTATGACATGCCATCGGATAAGCTCTTGGCG
CATTTTGCTCTGTACGGGGAGATAGAGGAGGGCCCGCTAGGGTTTGATAA
GCRGACTGGGAAGTGCAAAGGGTATGCGCTGTTTGTGTATAAGACTCCGG
AGGGGGCTCAGGCGGCGCTTGTTGATCCGGCGAAGAACATCGAGGGGAGG
CAGTTGCTTTGTAAATTGGCGATTGATGGGAAAAAGAGCAAGTCGGACGG
GCCGGGGCAGGGTCAAGGACCCGGGAGTGGTTCCAATGCGCATGGAGATG
GGATGGGGATGGCACCGCCGTCTTCGATTCCTGGGCAGTACGGCATCCCA
GGTGGAATTGGTTCTTATGGTGGGTATAACAGTGGGCTTCAGGGCCAGCC
TCCATTGGGTCACCATCCATTGGGTGGGCCTGGGTTGTCTGGTATTGGAA
ACCAGGTGAATTCGGGTTTGGGTGGTGGTGGTGGATATGGAGGGTTGGGT
GGGCCTTATGGTAACTATGGCGGGCCTGGGGGTTATGGTTTAGGTGGTGC
CGGTGGGTTGGGTGGTGGACTTGGTGGTGCTGGGTCGGGTGGTCCAGTTG
GTGGTGTGGGTACTGGGTCGTCTTTATATGGATTGCCTCCGAGTTCAGGT
GGGTTACCATCTGGTAGGTATCCGGAGGGTGGGCACTACGGCCTGTCGGC
CTATCAGAATCAGCACCACCAGCAAGCTGGAACGTCACCCCTTCCAAGGG
TTCCTCAAGGTGGCATGTACCCAAATGTGCCACCTTATTTCTGA
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protein sequence of MDP0000293302

>MDP0000293302 ID=MDP0000293302; Name=MDP0000293302; organism=Malus x domestica; type=polypeptide; length=404bp
MDSTKKRKLDENGVVLDTDPSSAPKLSPEDARRLIERFTPDQLLDILQDA
LSRHVDVLDAVRSIADPDASQRKLFIRGLGWDTTTEGLRSLFSAYGELEE
AIVILDKTTGKSKGYGFVTSPPRGIRTPTXXQQRPTTLRKIYVANVPYDM
PSDKLLAHFALYGEIEEGPLGFDKXTGKCKGYALFVYKTPEGAQAALVDP
AKNIEGRQLLCKLAIDGKKSKSDGPGQGQGPGSGSNAHGDGMGMAPPSSI
PGQYGIPGGIGSYGGYNSGLQGQPPLGHHPLGGPGLSGIGNQVNSGLGGG
GGYGGLGGPYGNYGGPGGYGLGGAGGLGGGLGGAGSGGPVGGVGTGSSLY
GLPPSSGGLPSGRYPEGGHYGLSAYQNQHHQQAGTSPLPRVPQGGMYPNV
PPYF
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mRNA from alignment at chr11:29810381..29811674-

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MDP0000293302 ID=MDP0000293302; Name=MDP0000293302; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr11:29810381..29811674- (Malus x domestica
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mRNA from alignment at MDC013707.240:4707..6000-

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MDP0000293302 ID=MDP0000293302; Name=MDP0000293302; organism=Malus x domestica; type=mRNA; length=1294bp; location=Sequence derived from: MDC013707.240:4707..6000- (Malus x domestica
ATGGACTCAACCAAGAAGCGAAAGCTGGACGAGAACGGCGTCGTTCTGGA
CACGGATCCCTCCTCCGCCCCCAAGCTCTCCCCCGAAGACGCTCGCAGGC
TCATCGAGCGATTCACCCCCGATCAACTCCTCGACATTCTCCAAGACGCC
CTCTCCCGCCACGTCGACGTTCTCGACGCCGTCCGYTCCATCGCCGATCC
CGACGCCTCCCAGCGCAAGCTCTTCATCCGCGGCCTCGGCTGGGACACCA
CCACCGAGGGCCTCCGATCCCTCTTCTCCGCCTACGGCGAGCTGGAGGAG
GCTATCGTTATCCTCGACAAAACCACCGGAAAATCCAAGGGTTACGGGTT
CGTCACGTTCCGCCACGTTGACAGTGCTCTCATGGCCCTGAAAGAACCGA
GCAAGAAGATCGACGGCCGCATGACCGTCACGCAGCTCGCCTCCGCGGGG
AATTCGAACTCCAACRCSGMCCCAACAACGTCCTACGACGTTGCGGAAGA
TTTATGTGGCCAATGTTCCCTATGACATGCCATCGGATAAGCTCTTGGCG
CATTTTGCTCTGTACGGGGAGATAGAGGAGGGCCCGCTAGGGTTTGATAA
GCRGACTGGGAAGTGCAAAGGGTATGCGCTGTTTGTGTATAAGACTCCGG
AGGGGGCTCAGGCGGCGCTTGTTGATCCGGCGAAGAACATCGAGGGGAGG
CAGTTGCTTTGTAAATTGGCGATTGATGGGAAAAAGAGCAAGTCGGACGG
GCCGGGGCAGGGTCAAGGACCCGGGAGTGGTTCCAATGCGCATGGAGATG
GGATGGGGATGGCACCGCCGTCTTCGATTCCTGGGCAGTACGGCATCCCA
GGTGGAATTGGTTCTTATGGTGGGTATAACAGTGGGCTTCAGGGCCAGCC
TCCATTGGGTCACCATCCATTGGGTGGGCCTGGGTTGTCTGGTATTGGAA
ACCAGGTGAATTCGGGTTTGGGTGGTGGTGGTGGATATGGAGGGTTGGGT
GGGCCTTATGGTAACTATGGCGGGCCTGGGGGTTATGGTTTAGGTGGTGC
CGGTGGGTTGGGTGGTGGACTTGGTGGTGCTGGGTCGGGTGGTCCAGTTG
GTGGTGTGGGTACTGGGTCGTCTTTATATGGATTGCCTCCGAGTTCAGGT
GGGTTACCATCTGGTAGGTATCCGGAGGGTGGGCACTACGGCCTGTCGGC
CTATCAGAATCAGCACCACCAGCAAGCTGGAACGTCACCCCTTCCAAGGG
TTCCTCAAGGTGGCATGTACCCAAATGTGCCACCTTATTTCTGA
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Coding sequence (CDS) from alignment at MDC013707.240:4707..6000-

>MDP0000293302 ID=MDP0000293302; Name=MDP0000293302; organism=Malus x domestica; type=CDS; length=1215bp; location=Sequence derived from: MDC013707.240:4707..6000- (Malus x domestica
ATGGACTCAACCAAGAAGCGAAAGCTGGACGAGAACGGCGTCGTTCTGGA
CACGGATCCCTCCTCCGCCCCCAAGCTCTCCCCCGAAGACGCTCGCAGGC
TCATCGAGCGATTCACCCCCGATCAACTCCTCGACATTCTCCAAGACGCC
CTCTCCCGCCACGTCGACGTTCTCGACGCCGTCCGYTCCATCGCCGATCC
CGACGCCTCCCAGCGCAAGCTCTTCATCCGCGGCCTCGGCTGGGACACCA
CCACCGAGGGCCTCCGATCCCTCTTCTCCGCCTACGGCGAGCTGGAGGAG
GCTATCGTTATCCTCGACAAAACCACCGGAAAATCCAAGGGTTACGGGTT
CGTCACCTCGCCTCCGCGGGGAATTCGAACTCCAACRCSGMCCCAACAAC
GTCCTACGACGTTGCGGAAGATTTATGTGGCCAATGTTCCCTATGACATG
CCATCGGATAAGCTCTTGGCGCATTTTGCTCTGTACGGGGAGATAGAGGA
GGGCCCGCTAGGGTTTGATAAGCRGACTGGGAAGTGCAAAGGGTATGCGC
TGTTTGTGTATAAGACTCCGGAGGGGGCTCAGGCGGCGCTTGTTGATCCG
GCGAAGAACATCGAGGGGAGGCAGTTGCTTTGTAAATTGGCGATTGATGG
GAAAAAGAGCAAGTCGGACGGGCCGGGGCAGGGTCAAGGACCCGGGAGTG
GTTCCAATGCGCATGGAGATGGGATGGGGATGGCACCGCCGTCTTCGATT
CCTGGGCAGTACGGCATCCCAGGTGGAATTGGTTCTTATGGTGGGTATAA
CAGTGGGCTTCAGGGCCAGCCTCCATTGGGTCACCATCCATTGGGTGGGC
CTGGGTTGTCTGGTATTGGAAACCAGGTGAATTCGGGTTTGGGTGGTGGT
GGTGGATATGGAGGGTTGGGTGGGCCTTATGGTAACTATGGCGGGCCTGG
GGGTTATGGTTTAGGTGGTGCCGGTGGGTTGGGTGGTGGACTTGGTGGTG
CTGGGTCGGGTGGTCCAGTTGGTGGTGTGGGTACTGGGTCGTCTTTATAT
GGATTGCCTCCGAGTTCAGGTGGGTTACCATCTGGTAGGTATCCGGAGGG
TGGGCACTACGGCCTGTCGGCCTATCAGAATCAGCACCACCAGCAAGCTG
GAACGTCACCCCTTCCAAGGGTTCCTCAAGGTGGCATGTACCCAAATGTG
CCACCTTATTTCTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0000166nucleotide binding