MDP0000381936, MDP0000381936 (mRNA) Malus spp. (apple)

Transcript Overview
NameMDP0000381936
Unique NameMDP0000381936
TypemRNA
OrganismMalus x domestica (Apple)
Sequence length1494
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA2012-07-23
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
MDP0000381936_exon_1MDP0000381936_exon_1Malus x domesticaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
MDP0000381936MDP0000381936Malus x domesticapolypeptide


InterPro
Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 152..218
score: 3.5
IPR000504RNA recognition motif domainSMARTSM00360RNA recognition motifcoord: 151..223
score: 2.1e-19coord: 257..329
score: 3.5
IPR000504RNA recognition motif domainPROFILEPS50102RRMcoord: 150..247
score: 14.044coord: 256..332
score: 12
IPR012677Nucleotide-binding, alpha-beta plaitGENE3D3.30.70.330no descriptioncoord: 140..224
score: 2.3e-18coord: 244..336
score: 1.1
NoneNo IPR availableCOILcoilcoiled-coilcoord: 30..76
score
NoneNo IPR availablePANTHERPTHR24011FAMILY NOT NAMEDcoord: 14..494
score: 2.7e
NoneNo IPR availablePANTHERPTHR24011:SF5SUBFAMILY NOT NAMEDcoord: 14..494
score: 2.7e
NoneNo IPR availablePFAMPF14259RRM_6coord: 258..324
score: 4.6
NoneNo IPR availableSEGsegsegcoord: 35..83
score: NAcoord: 93..107
score: NAcoord: 225..249
score: NAcoord: 339..356
score: NAcoord: 401..423
score: NAcoord: 473..491
score
NoneNo IPR availableSUPERFAMILY54928RNA-binding domain, RBDcoord: 149..340
score: 1.1
NoneNo IPR availableSEGsegsegcoord: 1..41
score
NoneNo IPR availableSEGsegsegcoord: 44..59
score
NoneNo IPR availableSEGsegsegcoord: 61..72
score
NoneNo IPR availableSEGsegsegcoord: 1..13
score
NoneNo IPR availableSEGsegsegcoord: 35..56
score
NoneNo IPR availableSEGsegsegcoord: 10..59
score: NAcoord: 62..84
score
NoneNo IPR availableSEGsegsegcoord: 10..24
score: NAcoord: 38..82
score: NAcoord: 96..108
score
NoneNo IPR availableSEGsegsegcoord: 43..61
score
NoneNo IPR availableSEGsegsegcoord: 1..21
score
NoneNo IPR availableSEGsegsegcoord: 5..50
score

Sequences
The following sequences are available for this feature:

mRNA sequence

>MDP0000381936 ID=MDP0000381936; Name=MDP0000381936; organism=Malus x domestica; type=mRNA; length=1494bp
ATGGCGAAAAAGAGAAAGCTCAGCTCCACCGAGCCCTCCGAACCCTCCAA
GAAGCAACAACAGGTCGTTGAGGAACCCAAACCCCAAATTGAACCAGCAC
AGGAAGTAGTCGAAGAGGAAGAAGAAGAAGTCGAAGAAGAGGAGGTGGAG
GAGGAAGAGCCGGAAGAAGAGAAGGAAGATGAAGGAGCCGATGAAGAGGA
AGAGGAAGAAGAGGAGGACGAAGAGGAGCCGGGCGCTGAGTATAAGGAAA
CCTATAACGTAACCACGACCTCCATCTCAGCGGCTTCGGATCAGGCCGGT
GCCGGTRACGACGAGGACGAGCCGATCCAGAATCTTCTAGAACCATTCAC
CAAGGAACAGCTTATGGCCCTGCTCCGCGAAGCTGCCKATAATCATGGCG
ACGTGGCGGATCGGATCCGGAAGGTTGCGGATGAGGACCCAATCCACCGC
AAGATCTTCGTCCACGGTCTCGGATGGGATACCAACGCCGAAACCCTAAC
TGGCGTATTTAGGGAATACGGTGAGATTGAGGATTGCAAGGCTGTTTGCG
ATAAGGTCTCTGGTAAGTCCAAGGGTTACGGTTTCATTCTCTTCAAGACT
CGTTCTGGGGCCCGAAAAGCCCTACAGCAGCCCCAGAAGAGGATCGGTAA
TCGGATGACTGCATGCCAGCTGGCGGCAATTGGCCCTGGCCCGGCTCCTA
ATGCCGCTGCTGGACCTGTGGTGGCCCAGGTGGCTCAGTCCCAGCCAATG
TCTGAGTACACTCAGAGGAAGATCTATGTGAGCAATGTTGGGGCGGACTT
GGATATCCAGAAGCTGCTTATGTTCTTTTCTAGGTTTGGWGAAGTTGAGG
ACGGGCCACTAGGGCTCGATAAGCTAACGGGGAGGCCTAAGGGGTTTTGC
TTGTTTGTGTACAAGTCGGCAGAGAGTGCGAAGAGGGCTCTGGAAGAGCC
ACACAAGAATTTTGAGGGCCATATTTTGCATTGCCAGAAGGCTATTGACG
GTCCAAAGCCGGGCAAGTCTCAGCACCAGCACCAGAACCAGCACCACCAC
AAGTCACATAATTCCAAGTTTCAGAGGAATGAGAATCCAGGTTATGCAGG
TGGAGCTGCATCAGGAATGGGGCATTTGATGGCGCCTGCGAGTGGAGGGA
TTGGATTTAATCAGGGGGCTCCTGCAGCCCAGGCATTTAACCCGGCAATT
GGGCAGGCACTGACTGCTTTGCTTGCAACACAGGGAGCTGGCTTGGGGTT
GACAAACCTTTTGGGGACGTTTGGATCTGCTCCAAATGTGAACCCAGGTG
TTCCTGGTGCAGGACATGTGATACAGGGTGGATATGGGAATCAGGCAAGT
ATTAGTCCTGGGATGATGGGAAGCTATGGAAATCAAGGTGCAATGCAAGG
TGGCTACCCTAACCCGCAGTTAGGGCAAGGTGGTTCAGGAAGAGGGCAGC
ATGGCGTTGGGCAATCTGGTGGCGCTCCGTACATGGGGCATTAG
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protein sequence of MDP0000381936

>MDP0000381936 ID=MDP0000381936; Name=MDP0000381936; organism=Malus x domestica; type=polypeptide; length=498bp
MAKKRKLSSTEPSEPSKKQQQVVEEPKPQIEPAQEVVEEEEEEVEEEEVE
EEEPEEEKEDEGADEEEEEEEEDEEEPGAEYKETYNVTTTSISAASDQAG
AGXDEDEPIQNLLEPFTKEQLMALLREAAXNHGDVADRIRKVADEDPIHR
KIFVHGLGWDTNAETLTGVFREYGEIEDCKAVCDKVSGKSKGYGFILFKT
RSGARKALQQPQKRIGNRMTACQLAAIGPGPAPNAAAGPVVAQVAQSQPM
SEYTQRKIYVSNVGADLDIQKLLMFFSRFGEVEDGPLGLDKLTGRPKGFC
LFVYKSAESAKRALEEPHKNFEGHILHCQKAIDGPKPGKSQHQHQNQHHH
KSHNSKFQRNENPGYAGGAASGMGHLMAPASGGIGFNQGAPAAQAFNPAI
GQALTALLATQGAGLGLTNLLGTFGSAPNVNPGVPGAGHVIQGGYGNQAS
ISPGMMGSYGNQGAMQGGYPNPQLGQGGSGRGQHGVGQSGGAPYMGH*
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mRNA from alignment at chr7:17371481..17372974+

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MDP0000381936 ID=MDP0000381936; Name=MDP0000381936; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr7:17371481..17372974+ (Malus x domestica
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mRNA from alignment at MDC002608.618:1662..3155+

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MDP0000381936 ID=MDP0000381936; Name=MDP0000381936; organism=Malus x domestica; type=mRNA; length=1494bp; location=Sequence derived from: MDC002608.618:1662..3155+ (Malus x domestica
ATGGCGAAAAAGAGAAAGCTCAGCTCCACCGAGCCCTCCGAACCCTCCAA
GAAGCAACAACAGGTCGTTGAGGAACCCAAACCCCAAATTGAACCAGCAC
AGGAAGTAGTCGAAGAGGAAGAAGAAGAAGTCGAAGAAGAGGAGGTGGAG
GAGGAAGAGCCGGAAGAAGAGAAGGAAGATGAAGGAGCCGATGAAGAGGA
AGAGGAAGAAGAGGAGGACGAAGAGGAGCCGGGCGCTGAGTATAAGGAAA
CCTATAACGTAACCACGACCTCCATCTCAGCGGCTTCGGATCAGGCCGGT
GCCGGTRACGACGAGGACGAGCCGATCCAGAATCTTCTAGAACCATTCAC
CAAGGAACAGCTTATGGCCCTGCTCCGCGAAGCTGCCKATAATCATGGCG
ACGTGGCGGATCGGATCCGGAAGGTTGCGGATGAGGACCCAATCCACCGC
AAGATCTTCGTCCACGGTCTCGGATGGGATACCAACGCCGAAACCCTAAC
TGGCGTATTTAGGGAATACGGTGAGATTGAGGATTGCAAGGCTGTTTGCG
ATAAGGTCTCTGGTAAGTCCAAGGGTTACGGTTTCATTCTCTTCAAGACT
CGTTCTGGGGCCCGAAAAGCCCTACAGCAGCCCCAGAAGAGGATCGGTAA
TCGGATGACTGCATGCCAGCTGGCGGCAATTGGCCCTGGCCCGGCTCCTA
ATGCCGCTGCTGGACCTGTGGTGGCCCAGGTGGCTCAGTCCCAGCCAATG
TCTGAGTACACTCAGAGGAAGATCTATGTGAGCAATGTTGGGGCGGACTT
GGATATCCAGAAGCTGCTTATGTTCTTTTCTAGGTTTGGWGAAGTTGAGG
ACGGGCCACTAGGGCTCGATAAGCTAACGGGGAGGCCTAAGGGGTTTTGC
TTGTTTGTGTACAAGTCGGCAGAGAGTGCGAAGAGGGCTCTGGAAGAGCC
ACACAAGAATTTTGAGGGCCATATTTTGCATTGCCAGAAGGCTATTGACG
GTCCAAAGCCGGGCAAGTCTCAGCACCAGCACCAGAACCAGCACCACCAC
AAGTCACATAATTCCAAGTTTCAGAGGAATGAGAATCCAGGTTATGCAGG
TGGAGCTGCATCAGGAATGGGGCATTTGATGGCGCCTGCGAGTGGAGGGA
TTGGATTTAATCAGGGGGCTCCTGCAGCCCAGGCATTTAACCCGGCAATT
GGGCAGGCACTGACTGCTTTGCTTGCAACACAGGGAGCTGGCTTGGGGTT
GACAAACCTTTTGGGGACGTTTGGATCTGCTCCAAATGTGAACCCAGGTG
TTCCTGGTGCAGGACATGTGATACAGGGTGGATATGGGAATCAGGCAAGT
ATTAGTCCTGGGATGATGGGAAGCTATGGAAATCAAGGTGCAATGCAAGG
TGGCTACCCTAACCCGCAGTTAGGGCAAGGTGGTTCAGGAAGAGGGCAGC
ATGGCGTTGGGCAATCTGGTGGCGCTCCGTACATGGGGCATTAG
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Coding sequence (CDS) from alignment at MDC002608.618:1662..3155+

>MDP0000381936 ID=MDP0000381936; Name=MDP0000381936; organism=Malus x domestica; type=CDS; length=1494bp; location=Sequence derived from: MDC002608.618:1662..3155+ (Malus x domestica
ATGGCGAAAAAGAGAAAGCTCAGCTCCACCGAGCCCTCCGAACCCTCCAA
GAAGCAACAACAGGTCGTTGAGGAACCCAAACCCCAAATTGAACCAGCAC
AGGAAGTAGTCGAAGAGGAAGAAGAAGAAGTCGAAGAAGAGGAGGTGGAG
GAGGAAGAGCCGGAAGAAGAGAAGGAAGATGAAGGAGCCGATGAAGAGGA
AGAGGAAGAAGAGGAGGACGAAGAGGAGCCGGGCGCTGAGTATAAGGAAA
CCTATAACGTAACCACGACCTCCATCTCAGCGGCTTCGGATCAGGCCGGT
GCCGGTRACGACGAGGACGAGCCGATCCAGAATCTTCTAGAACCATTCAC
CAAGGAACAGCTTATGGCCCTGCTCCGCGAAGCTGCCKATAATCATGGCG
ACGTGGCGGATCGGATCCGGAAGGTTGCGGATGAGGACCCAATCCACCGC
AAGATCTTCGTCCACGGTCTCGGATGGGATACCAACGCCGAAACCCTAAC
TGGCGTATTTAGGGAATACGGTGAGATTGAGGATTGCAAGGCTGTTTGCG
ATAAGGTCTCTGGTAAGTCCAAGGGTTACGGTTTCATTCTCTTCAAGACT
CGTTCTGGGGCCCGAAAAGCCCTACAGCAGCCCCAGAAGAGGATCGGTAA
TCGGATGACTGCATGCCAGCTGGCGGCAATTGGCCCTGGCCCGGCTCCTA
ATGCCGCTGCTGGACCTGTGGTGGCCCAGGTGGCTCAGTCCCAGCCAATG
TCTGAGTACACTCAGAGGAAGATCTATGTGAGCAATGTTGGGGCGGACTT
GGATATCCAGAAGCTGCTTATGTTCTTTTCTAGGTTTGGWGAAGTTGAGG
ACGGGCCACTAGGGCTCGATAAGCTAACGGGGAGGCCTAAGGGGTTTTGC
TTGTTTGTGTACAAGTCGGCAGAGAGTGCGAAGAGGGCTCTGGAAGAGCC
ACACAAGAATTTTGAGGGCCATATTTTGCATTGCCAGAAGGCTATTGACG
GTCCAAAGCCGGGCAAGTCTCAGCACCAGCACCAGAACCAGCACCACCAC
AAGTCACATAATTCCAAGTTTCAGAGGAATGAGAATCCAGGTTATGCAGG
TGGAGCTGCATCAGGAATGGGGCATTTGATGGCGCCTGCGAGTGGAGGGA
TTGGATTTAATCAGGGGGCTCCTGCAGCCCAGGCATTTAACCCGGCAATT
GGGCAGGCACTGACTGCTTTGCTTGCAACACAGGGAGCTGGCTTGGGGTT
GACAAACCTTTTGGGGACGTTTGGATCTGCTCCAAATGTGAACCCAGGTG
TTCCTGGTGCAGGACATGTGATACAGGGTGGATATGGGAATCAGGCAAGT
ATTAGTCCTGGGATGATGGGAAGCTATGGAAATCAAGGTGCAATGCAAGG
TGGCTACCCTAACCCGCAGTTAGGGCAAGGTGGTTCAGGAAGAGGGCAGC
ATGGCGTTGGGCAATCTGGTGGCGCTCCGTACATGGGGCATTAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0000166nucleotide binding