SNP_IGA_12519, SNP_IGA_12519 (genetic_marker) Prunus persica

Marker Overview
NameSNP_IGA_12519
dbSNP IDN/A
SNP Array ID
IRSC 16K SNP array for peach:SNP_IGA_12519
IRSC 9K SNP array for peach:SNP_IGA_12519
TypeSNP
SNP Alleles[T/C]
SpeciesPrunus persica
Primer 1SNP_IGA_12519_LEFT_primer_0: TGAACACCCTGTTGCTGTTATC
Primer 2SNP_IGA_12519_RIGHT_primer_0: TAGAGTCAGCAAAGTCACTGGC
Product Length146
ContactKsenija Gasic
Contact
NameDetails
Ksenija Gasic
Description:fruit quality, abiotic and biotic tolerance /resistance
First name:Ksenija
Last name:Gasic
Title:Assistant professor
Institution:Clemson University
Address:112 BRC/ 51 New Cherry Rd, Clemson Sc 29634
Country:USA
Email:kgasic@clemson.edu
Phone:864.656.3664.
Fax:864-656-4960
Keywords:Traditional and molecular plant breeding
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Alignment of IRSC SNP array 9K to Peach Genome v2.0.a12016-11-21
Relationships

This genetic_marker is adjacent to the following primer feature(s):

Feature NameUnique NameSpeciesType
SNP_IGA_12519_LEFT_primer_0SNP_IGA_12519_LEFT_primer_0Prunus persicaprimer
SNP_IGA_12519_RIGHT_primer_0SNP_IGA_12519_RIGHT_primer_0Prunus persicaprimer


The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
SNP_IGA_12519SNP_IGA_12519-10.59Prunus persicamarker_locus
SNP_IGA_12519SNP_IGA_12519-8.322Prunus persicamarker_locus
SNP_IGA_12519SNP_IGA_12519Prunus persicamarker_locus
SA12519SA12519Prunus persicamarker_locus


Sequence
>SNP_IGA_12519 ID=SNP_IGA_12519|Name=SNP_IGA_12519|organism=Prunus persica|type=genetic_marker|length=121bp
CTGAACACCCTGTTGCTGTTATCTTTGTCATCATGGCAACCCCATTGTGA
GCACCAACAAYTCTCTTCCCATCTGTAACAATATCAACAGCTCCAGAAAC
TGCCACTATGGCACCACTGGC
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Peach_Consensus_map_20181N/A10.59SNP_IGA_12519-10.59View
2Peach-ZC-F2-20181N/A8.32SNP_IGA_12519-8.322View
3Peach-WB-F2-2015LG1N/A11.26SNP_IGA_12519View
4peach-ZC-F21_1N/A6.12SNP_IGA_12519View
5Peach-PF-Recurrent-2017LG1N/A5.4SNP_IGA_12519View
6Prunus-TE-F2-20151N/A4.2SA12519View
Alignments
Feature NameTypeLocationAnalysis
scaffold_1 supercontig scaffold_1:4062468..4062468. Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp01 chromosome Pp01:4062238..4062238. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)