SNP_IGA_16897, SNP_IGA_16897 (genetic_marker) Prunus persica

Marker Overview
NameSNP_IGA_16897
dbSNP IDN/A
SNP Array ID
IRSC 16K SNP array for peach:SNP_IGA_16897
IRSC 9K SNP array for peach:SNP_IGA_16897
TypeSNP
SNP Alleles[T/C]
SpeciesPrunus persica
Primer 1SNP_IGA_16897_LEFT_primer_0: ATTACCTAAAAGCCAGTGGCAA
Primer 2SNP_IGA_16897_RIGHT_primer_0: CTCCAGAAAGAGAAGGGACTGA
Product Length262
ContactKsenija Gasic
Contact
NameDetails
Ksenija Gasic
Description:fruit quality, abiotic and biotic tolerance /resistance
First name:Ksenija
Last name:Gasic
Title:Assistant professor
Institution:Clemson University
Address:112 BRC/ 51 New Cherry Rd, Clemson Sc 29634
Country:USA
Email:kgasic@clemson.edu
Phone:864.656.3664.
Fax:864-656-4960
Keywords:Traditional and molecular plant breeding
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Alignment of IRSC SNP array 9K to Peach Genome v2.0.a12016-11-21
Relationships

This genetic_marker is adjacent to the following primer feature(s):

Feature NameUnique NameSpeciesType
SNP_IGA_16897_LEFT_primer_0SNP_IGA_16897_LEFT_primer_0Prunus persicaprimer
SNP_IGA_16897_RIGHT_primer_0SNP_IGA_16897_RIGHT_primer_0Prunus persicaprimer


The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
SNP_IGA_16897SNP_IGA_16897-10.7Prunus persicamarker_locus
SNP_IGA_16897SNP_IGA_16897-8.322Prunus persicamarker_locus
SNP_IGA_16897SNP_IGA_16897Prunus persicamarker_locus
SA16897SA16897Prunus persicamarker_locus


Sequence
>SNP_IGA_16897 ID=SNP_IGA_16897|Name=SNP_IGA_16897|organism=Prunus persica|type=genetic_marker|length=121bp
AGATCTTGTTACTCTCTCGTTATTACCTAAAAGCCAGTGGCAAAGCTTAA
TCAATTTAGAYATCATAAAGGTATTTTCTACTGCTGGTTATTGATTGGTT
TCAGACTGTTTGACCTCATTT
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Peach_Consensus_map_20181N/A10.7SNP_IGA_16897-10.7View
2Peach-ZC-F2-20181N/A8.32SNP_IGA_16897-8.322View
3peach-ZC-F21_1N/A6.12SNP_IGA_16897View
4Peach-WB-F2-2015LG1N/A12.12SNP_IGA_16897View
5Peach-PF-BC1-2017LG1N/A14.5SNP_IGA_16897View
6Peach-PF-Recurrent-2017LG1N/A5.8SNP_IGA_16897View
7Prunus-TE-F2-20151N/A4.2SA16897View
Alignments
Feature NameTypeLocationAnalysis
scaffold_1 supercontig scaffold_1:5349462..5349462. Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp01 chromosome Pp01:4524835..4524835. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)