SNP_IGA_17419, SNP_IGA_17419 (genetic_marker) Prunus persica

Marker Overview
NameSNP_IGA_17419
AliasSA17419
dbSNP IDN/A
SNP Array ID
IRSC 16K SNP array for peach:SNP_IGA_17419
IRSC 9K SNP array for peach:SNP_IGA_17419
TypeSNP
SNP Alleles[T/C]
SpeciesPrunus persica
Primer 1SNP_IGA_17419_LEFT_primer_0: CGACAGTGTAGGAGTGCTTGAG
Primer 2SNP_IGA_17419_RIGHT_primer_0: CTACCTTGTCGCATGACTTCTG
Product Length267
Publication[view all]
ContactPere Arus
Ksenija Gasic
Contact
NameDetails
Pere Arus
First name:Pere
Last name:Arus
Title:Researcher
Institution:IRTA
Address:IRTA, Centre de Recerca en Agrigeno`mica CSIC-IRTA-UAB-UB; Campus UAB, Bellaterra (Cerdanyola del Valle`s), 08193 Barcelona, Spain
Country:Spain
Email:pere.arus@irta.cat
Ksenija Gasic
Description:fruit quality, abiotic and biotic tolerance /resistance
First name:Ksenija
Last name:Gasic
Title:Assistant professor
Institution:Clemson University
Address:112 BRC/ 51 New Cherry Rd, Clemson Sc 29634
Country:USA
Email:kgasic@clemson.edu
Phone:864.656.3664.
Fax:864-656-4960
Keywords:Traditional and molecular plant breeding
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
RosBREED SNP development2011-01-01
Alignment of IRSC SNP array 9K to Peach Genome v2.0.a12016-11-21
Relationships

This genetic_marker is adjacent to the following primer feature(s):

Feature NameUnique NameSpeciesType
SNP_IGA_17419_LEFT_primer_0SNP_IGA_17419_LEFT_primer_0Prunus persicaprimer
SNP_IGA_17419_RIGHT_primer_0SNP_IGA_17419_RIGHT_primer_0Prunus persicaprimer


The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
SNP_IGA_17419SNP_IGA_17419-14.16Prunus persicamarker_locus
SNP_IGA_17419SNP_IGA_17419Prunus spp.marker_locus
SA17419SA17419Prunus spp.marker_locus


Sequence
>SNP_IGA_17419 ID=SNP_IGA_17419|Name=SNP_IGA_17419|organism=Prunus persica|type=genetic_marker|length=121bp
TTTTTAAACGCCTCTATTCCTTCTCCTAATCTAGTACCTCGTGCAATGCC
CAACAGGTGTYGATAGTATGTTTCTTTTCACCACAATGATCACACTTTAG
TTTGCTTTTTTACAGAAGTCA
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Peach_Consensus_map_20181N/A14.16SNP_IGA_17419-14.16View
2Peach-PF-Recurrent-2017LG1N/A8.3SNP_IGA_17419View
3Prunus-TE-F2-20151N/A7.1SA17419View
4Prunus-TE-BC1-T1EG1_T1EN/A4.8SA17419View
Alignments
Feature NameTypeLocationAnalysis
scaffold_1 supercontig scaffold_1:5550921..5550921. Prunus persica Whole Genome v1.0 Assembly & Annotation
Pp01 chromosome Pp01:6000280..6000280. Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)